mRNA_F-serratus_M_contig702.18223.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig702.18223.1
Unique NamemRNA_F-serratus_M_contig702.18223.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig702.18223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig702contigF-serratus_M_contig702:87315..90168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1046
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig702.18223.1prot_F-serratus_M_contig702.18223.1Fucus serratus malepolypeptideF-serratus_M_contig702 87400..90020 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932159.6386707-UTR-F-serratus_M_contig702:87314..873991622932159.6386707-UTR-F-serratus_M_contig702:87314..87399Fucus serratus maleUTRF-serratus_M_contig702 87315..87399 +
1690964176.154474-UTR-F-serratus_M_contig702:87314..873991690964176.154474-UTR-F-serratus_M_contig702:87314..87399Fucus serratus maleUTRF-serratus_M_contig702 87315..87399 +
1622932159.7671866-UTR-F-serratus_M_contig702:90020..901681622932159.7671866-UTR-F-serratus_M_contig702:90020..90168Fucus serratus maleUTRF-serratus_M_contig702 90021..90168 +
1690964176.239643-UTR-F-serratus_M_contig702:90020..901681690964176.239643-UTR-F-serratus_M_contig702:90020..90168Fucus serratus maleUTRF-serratus_M_contig702 90021..90168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932159.6533384-CDS-F-serratus_M_contig702:87399..876481622932159.6533384-CDS-F-serratus_M_contig702:87399..87648Fucus serratus maleCDSF-serratus_M_contig702 87400..87648 +
1690964176.1773653-CDS-F-serratus_M_contig702:87399..876481690964176.1773653-CDS-F-serratus_M_contig702:87399..87648Fucus serratus maleCDSF-serratus_M_contig702 87400..87648 +
1622932159.673649-CDS-F-serratus_M_contig702:88377..884821622932159.673649-CDS-F-serratus_M_contig702:88377..88482Fucus serratus maleCDSF-serratus_M_contig702 88378..88482 +
1690964176.1901138-CDS-F-serratus_M_contig702:88377..884821690964176.1901138-CDS-F-serratus_M_contig702:88377..88482Fucus serratus maleCDSF-serratus_M_contig702 88378..88482 +
1622932159.6919005-CDS-F-serratus_M_contig702:88749..888951622932159.6919005-CDS-F-serratus_M_contig702:88749..88895Fucus serratus maleCDSF-serratus_M_contig702 88750..88895 +
1690964176.200376-CDS-F-serratus_M_contig702:88749..888951690964176.200376-CDS-F-serratus_M_contig702:88749..88895Fucus serratus maleCDSF-serratus_M_contig702 88750..88895 +
1622932159.730625-CDS-F-serratus_M_contig702:89083..892631622932159.730625-CDS-F-serratus_M_contig702:89083..89263Fucus serratus maleCDSF-serratus_M_contig702 89084..89263 +
1690964176.2116914-CDS-F-serratus_M_contig702:89083..892631690964176.2116914-CDS-F-serratus_M_contig702:89083..89263Fucus serratus maleCDSF-serratus_M_contig702 89084..89263 +
1622932159.7503796-CDS-F-serratus_M_contig702:89887..900201622932159.7503796-CDS-F-serratus_M_contig702:89887..90020Fucus serratus maleCDSF-serratus_M_contig702 89888..90020 +
1690964176.2264733-CDS-F-serratus_M_contig702:89887..900201690964176.2264733-CDS-F-serratus_M_contig702:89887..90020Fucus serratus maleCDSF-serratus_M_contig702 89888..90020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig702.18223.1

>prot_F-serratus_M_contig702.18223.1 ID=prot_F-serratus_M_contig702.18223.1|Name=mRNA_F-serratus_M_contig702.18223.1|organism=Fucus serratus male|type=polypeptide|length=271bp
MRFAVQEEVREDETYTETLSGSKDAIGNDGEAVNDNTGYQSADSTQDQAS
RYVPVFEPIDASEARARANAEQWRTFTVLLEPQPGSVEAASACKELTQLV
AGRGKDNVCGTRFTIITKDLLMEASKQRGFSGKSAPAQAFVSIMADDRLE
GLVMKKRALRGKNEECRDDESDWNEGSAPSQHVSTWQRDHAVLEENSGSQ
KVSEDCGNKKPEGSNYGGTDPVTARQREREKLELRAARLLTTPDDDLATL
DRRASQIQFVWSTSYGMEHI*
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mRNA from alignment at F-serratus_M_contig702:87315..90168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig702.18223.1 ID=mRNA_F-serratus_M_contig702.18223.1|Name=mRNA_F-serratus_M_contig702.18223.1|organism=Fucus serratus male|type=mRNA|length=2854bp|location=Sequence derived from alignment at F-serratus_M_contig702:87315..90168+ (Fucus serratus male)
GGGTAAAAGATATGGAGTAGAATAATATTTCGCCGGCGACATACTGCCCA
GCAGGCTCGCTTCGACAACGCACATAGGGTTGCTGATGCGTTTTGCGGTT
CAAGAAGAGGTGCGCGAAGACGAAACTTATACCGAAACCCTCAGCGGCAG
TAAGGATGCTATTGGTAATGATGGTGAGGCTGTCAATGACAATACCGGTT
ACCAAAGCGCTGATTCCACGCAGGATCAAGCGTCTCGATACGTCCCAGTG
TTCGAACCCATCGATGCCAGTGAAGCAAGAGCAAGAGCTAATGCTGAACA
GTGGCGTACCTTCACGGTGCTCTTGGAACCGCAGGTGAAATTGCGCACGC
GCCCGAGCCCAGACGCCGGAGATATTTATCTCCAACATCCATTTGCGTTA
GACCAAAACGCATGAGTGTTGTATCCTCATACTTAGCTGGGTCACTATTT
TTTTGTTGTTGTGTGTATTGTGCGAAATTTTGGAACCTTGCTGATTGGCT
TCAGAGTTCGAGTGTAACGAGTAAAAAAAACCGTCGCCCCGGTAGCTCAG
AGGTACCTCGTAACCCTCTGACACGTTGGAACGTGAGTTCGATCCCGGCA
AACGGGATTTTTCTCACTAAAAATAAAATAAAATAAAATAAAAAATGCCC
AACGGGTGGAGAACGATTAATTCGTCAGTACACAAAATTTGACTTCACGG
TCGACGAGGGAAAGGAAAGGTTGAATCCTTCTCGCGAGATAAATTAAGGC
ACGCACCGCAGAAGGAAGGTGGATGGAAAATCCTGTGTGACCTTCCTCCT
GTGTGACCCCGGCTGGTACGTCCATTGATGTCCAGAATGGATGGGAAGAA
AACACAAAACATGTATTTCAAAACCCCTTCCGCGGCAAGCTATGAACCCA
CAAAAATCAGCCTCGATGTTGCTAGAGGGTACTCGAGGTCAGCCTATCTG
CATTTTGTCCCTCGTTGTAGCACGCCATTGCACACAACTGTGTCTACCGT
TGACAGCACGCAACCGTGGCGACTCTGTGCCCGTTCTACGATGGCAATAC
TTGCTGATGACAGCCGGGATCGGTTGAGGCAGCAAGCGCATGTAAAGAAC
TTACGCAGCTAGTCGCAGGACGGGGCAAAGACAACGTCTGTGGGACACGC
TTTACCATCATAACGAAGGTGCGAAAATAAATAGAAGACTGAACGCATCA
TGTCCCCCAGGGGTCCATCTAACGATGCCGCGTGGTTCGTGGCGGTGTAC
TGTGTATATTTGGACTCTCTTTCAGCTCAAGAGCTCAAACAGTTTTAGCG
GGTCAGGGAGATAAATGTGCCAAATGAGTTTTTGTCATGTTGAGTCCCCG
AGAAGGGAGCGTTGCTCAAGTCGCGTCAGGGAGGGATACATCACATCACC
TTTGGCTGGGCGGATGCGTGCCCTGTCACCGCTAGGATCTCCTGATGGAA
GCGTCGAAGCAACGCGGTTTTTCAGGCAAGAGCGCACCGGCTCAAGCATT
TGTTTCGATTATGGCAGATGATAGGCTAGAGGGCCTGGTTATGAAGAAGA
GGGCCTTGAGGGGCAAGAACGAAGAATGCAGGTACGGGCTTGTGTCCTCT
ACTGACTATATATATAATATATACTGGTATCACGCGGTGCTCGTATTATT
CGCCATTGTGGCAGGAATATATACTGTGCTCGCCTATGCGACATCGAGCT
ATTAATAGCAGGTATCGCACGCGACGCTTTCTCAATCCGCGGGAATACGG
TATCTATATGGGACATAAGGGACGACGAATCCGATTGGAACGAGGGAAGT
GCCCCTTCCCAACATGTTAGCACATGGCAACGCGATCACGCGGTTTTGGA
AGAAAACTCTGGTTCCCAGAAAGTGAGCGAAGATTGCGGAAACAAGAAGC
CGGAAGGCAGTAACTATGGAGGCACGGATCCTGTGACGGCAAGGCAAAGG
TCTGATACTGACATCTTACTTTTTTTAATAGAAACACAGTGGGAGAGTCG
ACGACGAGTGCGTGGTTCCGGTGGACAATCATATCAACTAAATATATATG
TCATACTGTAGGTCCTGGGGTTTGTACCTATGAGCCCACTGCAGCTTCAT
ATGTACCGATGGACCTTTCCTCTCCCCCCCCCTTGTAGTATGCTAACGAT
GTTTGAACATGCCGTATACAGCCAGCCGTCATCACGAGATCTCACCCAGC
GAGTGAACCACGATGATACCTTTCTTACTTGACACGCTAGTTCTTCATCT
TATGAGGACCGCCCTGTTACACTTGTCACATTGTCACATGTGCTGCCACA
CTCACCGTCATACTTCCTGTTACACTTGCTGCCACACTTGCTGTCGCAGT
TGCTGTCACACATGCTGTCACACTTTCTGTCACACTTGCTGTCACACTTG
CTGTCACACTGCCCATTATACTTAATATCACACTTACTGTCACATTGTCA
CATGTGCTGCCACGCTCGCTGTCATACTTACTGTCATATTTGTTGTCACA
CATGCTGTCACGATTTCTGGCGCACTCACTGCCATACTTGCAATCAAAAT
TGTTGCTACACATGCTGTCTCAGAGAGAGGGAAAAGCTGGAGCTGAGAGC
TGCGCGGTTACTCACGACACCAGATGACGATTTAGCAACTCTAGACAGGC
GCGCTTCACAGATTCAATTTGTCTGGTCAACAAGTTATGGTATGGAACAT
ATTTAATAGCTCCAAGCTTGTAATTCAATCGATAGCTCCTTTCAAATGGC
ACCAGATCACAGGTTTTGAAACGTCATGATACAACACAGATCACAGTTCG
AGTGTTGGTTGTCACTTCATGACGCGGACAAGACCCATCCCCTCTCTGAT
CCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig702:87315..90168+

>mRNA_F-serratus_M_contig702.18223.1 ID=mRNA_F-serratus_M_contig702.18223.1|Name=mRNA_F-serratus_M_contig702.18223.1|organism=Fucus serratus male|type=CDS|length=1626bp|location=Sequence derived from alignment at F-serratus_M_contig702:87315..90168+ (Fucus serratus male)
ATGCGTTTTGCGGTTCAAGAAGAGGTGCGCGAAGACGAAACTTATACCGA
AACCCTCAGCGGCAGTAAGGATGCTATTGGTAATGATGGTGAGGCTGTCA
ATGACAATACCGGTTACCAAAGCGCTGATTCCACGCAGGATCAAGCGTCT
CGATACGTCCCAGTGTTCGAACCCATCGATGCCAGTGAAGCAAGAGCAAG
AGCTAATGCTGAACAGTGGCGTACCTTCACGGTGCTCTTGGAACCGCAGA
TGCGTTTTGCGGTTCAAGAAGAGGTGCGCGAAGACGAAACTTATACCGAA
ACCCTCAGCGGCAGTAAGGATGCTATTGGTAATGATGGTGAGGCTGTCAA
TGACAATACCGGTTACCAAAGCGCTGATTCCACGCAGGATCAAGCGTCTC
GATACGTCCCAGTGTTCGAACCCATCGATGCCAGTGAAGCAAGAGCAAGA
GCTAATGCTGAACAGTGGCGTACCTTCACGGTGCTCTTGGAACCGCAGCC
GGGATCGGTTGAGGCAGCAAGCGCATGTAAAGAACTTACGCAGCTAGTCG
CAGGACGGGGCAAAGACAACGTCTGTGGGACACGCTTTACCATCATAACG
AAGCCGGGATCGGTTGAGGCAGCAAGCGCATGTAAAGAACTTACGCAGCT
AGTCGCAGGACGGGGCAAAGACAACGTCTGTGGGACACGCTTTACCATCA
TAACGAAGGATCTCCTGATGGAAGCGTCGAAGCAACGCGGTTTTTCAGGC
AAGAGCGCACCGGCTCAAGCATTTGTTTCGATTATGGCAGATGATAGGCT
AGAGGGCCTGGTTATGAAGAAGAGGGCCTTGAGGGGCAAGAACGAAGAAT
GCAGGATCTCCTGATGGAAGCGTCGAAGCAACGCGGTTTTTCAGGCAAGA
GCGCACCGGCTCAAGCATTTGTTTCGATTATGGCAGATGATAGGCTAGAG
GGCCTGGTTATGAAGAAGAGGGCCTTGAGGGGCAAGAACGAAGAATGCAG
GGACGACGAATCCGATTGGAACGAGGGAAGTGCCCCTTCCCAACATGTTA
GCACATGGCAACGCGATCACGCGGTTTTGGAAGAAAACTCTGGTTCCCAG
AAAGTGAGCGAAGATTGCGGAAACAAGAAGCCGGAAGGCAGTAACTATGG
AGGCACGGATCCTGTGACGGCAAGGCAAAGGGACGACGAATCCGATTGGA
ACGAGGGAAGTGCCCCTTCCCAACATGTTAGCACATGGCAACGCGATCAC
GCGGTTTTGGAAGAAAACTCTGGTTCCCAGAAAGTGAGCGAAGATTGCGG
AAACAAGAAGCCGGAAGGCAGTAACTATGGAGGCACGGATCCTGTGACGG
CAAGGCAAAGAGAGAGGGAAAAGCTGGAGCTGAGAGCTGCGCGGTTACTC
ACGACACCAGATGACGATTTAGCAACTCTAGACAGGCGCGCTTCACAGAT
TCAATTTGTCTGGTCAACAAGTTATGGTATGGAACATATTTAAAGAGAGG
GAAAAGCTGGAGCTGAGAGCTGCGCGGTTACTCACGACACCAGATGACGA
TTTAGCAACTCTAGACAGGCGCGCTTCACAGATTCAATTTGTCTGGTCAA
CAAGTTATGGTATGGAACATATTTAA
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