mRNA_F-serratus_M_contig702.18219.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig702.18219.1
Unique NamemRNA_F-serratus_M_contig702.18219.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig702.18219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig702contigF-serratus_M_contig702:30883..31953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932158.5310295-CDS-F-serratus_M_contig702:30882..309641622932158.5310295-CDS-F-serratus_M_contig702:30882..30964Fucus serratus maleCDSF-serratus_M_contig702 30883..30964 -
1690964175.5554147-CDS-F-serratus_M_contig702:30882..309641690964175.5554147-CDS-F-serratus_M_contig702:30882..30964Fucus serratus maleCDSF-serratus_M_contig702 30883..30964 -
1622932158.5459297-CDS-F-serratus_M_contig702:31795..319531622932158.5459297-CDS-F-serratus_M_contig702:31795..31953Fucus serratus maleCDSF-serratus_M_contig702 31796..31953 -
1690964175.5656471-CDS-F-serratus_M_contig702:31795..319531690964175.5656471-CDS-F-serratus_M_contig702:31795..31953Fucus serratus maleCDSF-serratus_M_contig702 31796..31953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig702.18219.1prot_F-serratus_M_contig702.18219.1Fucus serratus malepolypeptideF-serratus_M_contig702 30883..31953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig702.18219.1

>prot_F-serratus_M_contig702.18219.1 ID=prot_F-serratus_M_contig702.18219.1|Name=mRNA_F-serratus_M_contig702.18219.1|organism=Fucus serratus male|type=polypeptide|length=80bp
RQHGPTQAGEKLRTPHQSLYPTPRTTLTLTGATTRRTFLATEPQEHQQEP
FRRQHGPTQAGEQLRTPHQSLYPTPRTTLT
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mRNA from alignment at F-serratus_M_contig702:30883..31953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig702.18219.1 ID=mRNA_F-serratus_M_contig702.18219.1|Name=mRNA_F-serratus_M_contig702.18219.1|organism=Fucus serratus male|type=mRNA|length=1071bp|location=Sequence derived from alignment at F-serratus_M_contig702:30883..31953- (Fucus serratus male)
AGACAACACGGGCCGACGCAGGCAGGGGAGAAGCTGCGAACACCCCACCA
GTCTCTCTATCCAACGCCAAGAACAACACTAACATTGACGGGGGCTACAA
CCAGGCGTACTTTCCTCGCGACGGAACCACAGGAACATCAACAAGAGCCA
TTCAGAAGGTCAAGCTACCCGGCACGAGGCGGGGGGGGGCAAAACTCAGG
CGGCGCAAGACACAGATATATGAAGACATCGAACGCATACCAACTATAAA
TAGACTACCCGTAAGCCGCCATGGAAGGAGCCACAGCTGATAAATATCGT
GTGCATTACCGGCGGTAGTTACAAACGATGGTAAATGTGTACTAAGCGTC
GCAAATATTGGAACCACAACTCCGACAAAGTACGCACGTATTAATATAGG
TATAGTACATAATTGAAGAGGATGAACGCATAACGCAATCAACACTCCAC
TCCACAATAGACTTGACCACACTTTCCACATGAATTGGGCAAACGACTTC
TGGTCTTAGTCCTCGTAATGGCGGTGGATGGAAACCGCGGGTGAAATCTT
GAGTCAACAAAGCCGCTCCCCACCTCTACGGGAGTGGTTCCGGGACGGCC
ACCCCTAGCTCACCAAAACCAACGATCCGGGCGTGACTGTAGAGGTTCAG
GAAACCACCACGGGCGTGATAAGTACTCGTACACGTACACGAACAAAACT
TCACCACATACGCAGCGTCGTGGTAAAACATCCATCGATCATCGATCACC
GACTACTGCGCTATGCTGCAGATAATGTTTCTCTCACGGGCAGTTTAGAG
GCTCAGTACAAACACCACGCTAACCCTCTTCTGCACTCGCCCTGGTACGG
CGGCCAATCGACCGGACATGTATAAGGGGTAGTCATTACACGACGCGAGC
AATGCAAAACACCCTTTTACACACTATTTCTATTTCTATCTCACACGGCG
CGTTTCCTCCACGACTTCCCCGTGCAATGTCTCACACAGACAACACGGGC
CGACGCAGGCAGGGGAGCAGCTGCGAACACCCCACCAGTCTCTCTATCCA
ACGCCAAGAACAACACTAACA
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Coding sequence (CDS) from alignment at F-serratus_M_contig702:30883..31953-

>mRNA_F-serratus_M_contig702.18219.1 ID=mRNA_F-serratus_M_contig702.18219.1|Name=mRNA_F-serratus_M_contig702.18219.1|organism=Fucus serratus male|type=CDS|length=480bp|location=Sequence derived from alignment at F-serratus_M_contig702:30883..31953- (Fucus serratus male)
AGACAACACGGGCCGACGCAGGCAGGGGAGAAGCTGCGAACACCCCACCA
GTCTCTCTATCCAACGCCAAGAACAACACTAACATTGACGGGGGCTACAA
CCAGGCGTACTTTCCTCGCGACGGAACCACAGGAACATCAACAAGAGCCA
TTCAGAAGAGACAACACGGGCCGACGCAGGCAGGGGAGAAGCTGCGAACA
CCCCACCAGTCTCTCTATCCAACGCCAAGAACAACACTAACATTGACGGG
GGCTACAACCAGGCGTACTTTCCTCGCGACGGAACCACAGGAACATCAAC
AAGAGCCATTCAGAAGACAACACGGGCCGACGCAGGCAGGGGAGCAGCTG
CGAACACCCCACCAGTCTCTCTATCCAACGCCAAGAACAACACTAACAAC
AACACGGGCCGACGCAGGCAGGGGAGCAGCTGCGAACACCCCACCAGTCT
CTCTATCCAACGCCAAGAACAACACTAACA
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