mRNA_F-serratus_M_contig70.18206.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig70.18206.1
Unique NamemRNA_F-serratus_M_contig70.18206.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig70contigF-serratus_M_contig70:939271..942044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1475
Cds size900
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig70.18206.1prot_F-serratus_M_contig70.18206.1Fucus serratus malepolypeptideF-serratus_M_contig70 941058..941957 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932150.3987563-UTR-F-serratus_M_contig70:939270..9393521622932150.3987563-UTR-F-serratus_M_contig70:939270..939352Fucus serratus maleUTRF-serratus_M_contig70 939271..939352 -
1690964172.0375512-UTR-F-serratus_M_contig70:939270..9393521690964172.0375512-UTR-F-serratus_M_contig70:939270..939352Fucus serratus maleUTRF-serratus_M_contig70 939271..939352 -
1622932150.412839-UTR-F-serratus_M_contig70:940651..9410571622932150.412839-UTR-F-serratus_M_contig70:940651..941057Fucus serratus maleUTRF-serratus_M_contig70 940652..941057 -
1690964172.0490587-UTR-F-serratus_M_contig70:940651..9410571690964172.0490587-UTR-F-serratus_M_contig70:940651..941057Fucus serratus maleUTRF-serratus_M_contig70 940652..941057 -
1622932150.44223-UTR-F-serratus_M_contig70:941957..9420441622932150.44223-UTR-F-serratus_M_contig70:941957..942044Fucus serratus maleUTRF-serratus_M_contig70 941958..942044 -
1690964172.0760148-UTR-F-serratus_M_contig70:941957..9420441690964172.0760148-UTR-F-serratus_M_contig70:941957..942044Fucus serratus maleUTRF-serratus_M_contig70 941958..942044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932150.4285986-CDS-F-serratus_M_contig70:941057..9419571622932150.4285986-CDS-F-serratus_M_contig70:941057..941957Fucus serratus maleCDSF-serratus_M_contig70 941058..941957 -
1690964172.0618093-CDS-F-serratus_M_contig70:941057..9419571690964172.0618093-CDS-F-serratus_M_contig70:941057..941957Fucus serratus maleCDSF-serratus_M_contig70 941058..941957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig70.18206.1

>prot_F-serratus_M_contig70.18206.1 ID=prot_F-serratus_M_contig70.18206.1|Name=mRNA_F-serratus_M_contig70.18206.1|organism=Fucus serratus male|type=polypeptide|length=300bp
MSSAASSSGSSKTEAKIASDGLQSSMGTASSRPTARSGRASAPSSPVTST
TLRAAAGSGNGRFRGLRPDAPVSPRVPLGGSPPAHLACFREAWEELAPSL
QARFSAVSIPDLRASLAAAEAAQATQDPASITADLHAVALAEEEHATRMR
PLQAEATLLEDQQRLNAAAMLSANREHQAYLRSIRGDSRPSRPAHTTEHP
AAPATLAALNAPAALQWRHVAAVGPPGTTGHHHRRRGTPGLHPHSPRRRH
TLWPHQTPAFISPRPTPGPLSLPADSPACPPTDSPTCPPTATRNSVSPA*
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mRNA from alignment at F-serratus_M_contig70:939271..942044-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig70.18206.1 ID=mRNA_F-serratus_M_contig70.18206.1|Name=mRNA_F-serratus_M_contig70.18206.1|organism=Fucus serratus male|type=mRNA|length=2774bp|location=Sequence derived from alignment at F-serratus_M_contig70:939271..942044- (Fucus serratus male)
GAACATCGCTCCTTCTCCGCCGATACCCGCCGCCCCCCTACTGCCCTCCC
CCTTTCTCCCCTTGGCCCTTCGCGAGCTTCTGACAGCATGTCTTCCGCCG
CCTCATCGTCCGGTTCTTCCAAGACGGAAGCAAAGATCGCCAGCGACGGC
CTTCAGTCCTCCATGGGGACTGCTTCTTCTCGCCCCACCGCCCGCTCCGG
TCGGGCGTCTGCGCCTTCTTCTCCGGTGACCTCGACCACCCTGCGTGCGG
CTGCTGGCTCCGGCAACGGCCGGTTCCGCGGGCTACGCCCCGATGCCCCC
GTTTCACCAAGGGTCCCTCTGGGTGGATCACCCCCCGCCCACCTTGCCTG
CTTCCGTGAAGCCTGGGAGGAACTGGCGCCCTCACTTCAAGCCCGGTTCA
GCGCCGTCTCGATCCCGGACTTGAGAGCCAGCTTGGCCGCCGCCGAGGCG
GCTCAAGCCACCCAAGACCCGGCCTCCATCACGGCGGACCTCCATGCCGT
TGCTCTCGCCGAGGAGGAGCACGCTACCCGAATGCGCCCCTTGCAGGCGG
AGGCGACCCTTTTAGAAGACCAGCAGCGGCTCAACGCCGCGGCCATGCTC
TCGGCCAACCGAGAGCACCAAGCATATCTCCGGAGCATCCGGGGCGACTC
GCGCCCGTCACGGCCAGCTCATACCACGGAGCATCCAGCGGCTCCGGCCA
CACTCGCTGCCCTCAATGCCCCTGCAGCACTCCAGTGGCGCCATGTCGCG
GCCGTCGGCCCCCCAGGAACGACCGGGCACCATCACCGACGGCGAGGAAC
CCCCGGGCTCCATCCCCACTCCCCCAGGCGGCGACACACCCTATGGCCCC
ACCAGACGCCCGCGTTCATTTCGCCACGGCCGACCCCTGGTCCATTGTCG
CTCCCCGCCGACAGCCCGGCCTGCCCTCCAACCGACAGCCCGACCTGCCC
TCCAACCGCTACGAGGAACTCCGTGTCTCCCGCCTGAGGCATGTAAACAA
TTTTTTTCCTGCGAGCATCCGTCATGACATCAAGGACGTCGCCATCCGCG
TCGACGTAGCCTTCCGCGAATTGGGGAGCACCAAGTGTTACGTCGCCCAC
GCCATCAGGTTGGCTACTCAGGCGAACACCAATCTGCGCGACCCTCTGAT
CACCAACATCCTGCGCCTACGCGACCTCCTGGACAGGGCATATGCCTCCC
CACCTGGCGCCGAATGGATCCGGGATGTCTCCCGCCAGATCGCTTCTTCG
GGGAGTGACATCTCCTCTTCTATGGGACCCCGACGCCGCGAGGAGCCATC
CAGTGGACGTGGGAACTCTAAAAAGGTGTCACTAACCTCGGATAGCGAGG
ATCACCAGCCGGAGTCCCGGGGACGCCACTTTCGGGACTATAGGCAAGTA
CCTCGATTCTATCACTCGAGTGACGACAGCGATGCCCCCTGTTTTTCCCC
GCGTATTTTTCGGTACCGCACGTACTCACGGCGACAGCGCACATGCGTAC
CCCTCGCGCTGCCGCCTCCGCTGCCAGCACCGCCCCATCGGTACAGAATA
TAGTACAAGCAGCTACCACGGCAGCAATTGCCGCCGTAGACCACCACCTG
GCCAAATTAGGATTGCTCCCGCGACCGGACACCGAACCTTTGCACGACAC
AGTACCCCACCATCCCTCTCGCGCACAGCCACCGGTATCGCCGCCCCCAC
TGACGGTACCGGTGCCCCCGTCCACCGACCCCCTGCGCCCTTAACGCATC
ATTTTTGTCCCCCTGTAGGCTCCGACACTATAGAGTTCCCCCAACAGATA
GTCGATCCCCCGGACAGATGGGTGCCGTGAACCCCCTCACCCACTCCTTT
CCCCGCGTACAGTACCCCGTAGCGAACACCGCCCATGTACCGTGCCCCCA
AAATGTTTGTCCCACTGTAGGCCCTGACACTATAGAATTCCCCCAACAGA
TTGTCGATCCCCCCGGACAGATGGGTGCCGTGAACCCCCTCACCCACCCC
TCTCCCCGCGTACAGTACCCCGTAGTGAACACCGCCCATGTACCGTGCCC
CCAATTTTTTTGTCCCCCTGTAGGCCCTGACACTATAGAATTCCCCCAAC
AGATTGTCGATCCCCCCGGACAGATGGGTGCCGTGAACCCCCTCACCCAC
CCCTCACCCACCCCTCTCCCCGCGTACAGTACCCCGTAGTGAACACCGCC
CATGTACCGTGCCCCCAATGTTTTTGTCCCCCCGTAGCCCCCGACACTAG
AAAAATACCCCAACAGATTGCCGCTCCCCCCGGTCAGATGGGTGCCGTGA
ACCCCCCCCCCCCCCCCGCGTACAGTACCCCATAGTGAACACCGCTGGTG
TACAGTACCCCGTGACAAATACAGCACATGTACTGTACCCCACCACGGCC
CCCGCGCCCCCTACCACGGTCCCCGCTAGTGTACCGTATTCCCTTTCCAA
CGCCCCCCCGAGGGCGGCTCCGACAGACGAGCGCCCCCTGTATGACGATA
GTTCATGCAACAGCTCACAACCATCCAATTCTTCGGGCCCCCACCCGGAA
TTTATCGCCCACGTCCAGGCTGCATTTCGCACCCTAGATACGCGTAGAAT
TCCCCGCATCCAACCATTGCAGTTCCCCTCTTCCGCGGACAAAACTGCCG
CTACTCAACTCCTAACTCGCTCTATCCGTGATGCCCTCTCAGGGATCTTT
GACGTCGCTGATCCCACCGGGACGATGACCATGGACTCCCCTGTTTGGAT
TCCTGGGTGGCACGCACCACTCCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig70:939271..942044-

>mRNA_F-serratus_M_contig70.18206.1 ID=mRNA_F-serratus_M_contig70.18206.1|Name=mRNA_F-serratus_M_contig70.18206.1|organism=Fucus serratus male|type=CDS|length=1800bp|location=Sequence derived from alignment at F-serratus_M_contig70:939271..942044- (Fucus serratus male)
ATGTCTTCCGCCGCCTCATCGTCCGGTTCTTCCAAGACGGAAGCAAAGAT
CGCCAGCGACGGCCTTCAGTCCTCCATGGGGACTGCTTCTTCTCGCCCCA
CCGCCCGCTCCGGTCGGGCGTCTGCGCCTTCTTCTCCGGTGACCTCGACC
ACCCTGCGTGCGGCTGCTGGCTCCGGCAACGGCCGGTTCCGCGGGCTACG
CCCCGATGCCCCCGTTTCACCAAGGGTCCCTCTGGGTGGATCACCCCCCG
CCCACCTTGCCTGCTTCCGTGAAGCCTGGGAGGAACTGGCGCCCTCACTT
CAAGCCCGGTTCAGCGCCGTCTCGATCCCGGACTTGAGAGCCAGCTTGGC
CGCCGCCGAGGCGGCTCAAGCCACCCAAGACCCGGCCTCCATCACGGCGG
ACCTCCATGCCGTTGCTCTCGCCGAGGAGGAGCACGCTACCCGAATGCGC
CCCTTGCAGGCGGAGGCGACCCTTTTAGAAGACCAGCAGCGGCTCAACGC
CGCGGCCATGCTCTCGGCCAACCGAGAGCACCAAGCATATCTCCGGAGCA
TCCGGGGCGACTCGCGCCCGTCACGGCCAGCTCATACCACGGAGCATCCA
GCGGCTCCGGCCACACTCGCTGCCCTCAATGCCCCTGCAGCACTCCAGTG
GCGCCATGTCGCGGCCGTCGGCCCCCCAGGAACGACCGGGCACCATCACC
GACGGCGAGGAACCCCCGGGCTCCATCCCCACTCCCCCAGGCGGCGACAC
ACCCTATGGCCCCACCAGACGCCCGCGTTCATTTCGCCACGGCCGACCCC
TGGTCCATTGTCGCTCCCCGCCGACAGCCCGGCCTGCCCTCCAACCGACA
GCCCGACCTGCCCTCCAACCGCTACGAGGAACTCCGTGTCTCCCGCCTGA
ATGTCTTCCGCCGCCTCATCGTCCGGTTCTTCCAAGACGGAAGCAAAGAT
CGCCAGCGACGGCCTTCAGTCCTCCATGGGGACTGCTTCTTCTCGCCCCA
CCGCCCGCTCCGGTCGGGCGTCTGCGCCTTCTTCTCCGGTGACCTCGACC
ACCCTGCGTGCGGCTGCTGGCTCCGGCAACGGCCGGTTCCGCGGGCTACG
CCCCGATGCCCCCGTTTCACCAAGGGTCCCTCTGGGTGGATCACCCCCCG
CCCACCTTGCCTGCTTCCGTGAAGCCTGGGAGGAACTGGCGCCCTCACTT
CAAGCCCGGTTCAGCGCCGTCTCGATCCCGGACTTGAGAGCCAGCTTGGC
CGCCGCCGAGGCGGCTCAAGCCACCCAAGACCCGGCCTCCATCACGGCGG
ACCTCCATGCCGTTGCTCTCGCCGAGGAGGAGCACGCTACCCGAATGCGC
CCCTTGCAGGCGGAGGCGACCCTTTTAGAAGACCAGCAGCGGCTCAACGC
CGCGGCCATGCTCTCGGCCAACCGAGAGCACCAAGCATATCTCCGGAGCA
TCCGGGGCGACTCGCGCCCGTCACGGCCAGCTCATACCACGGAGCATCCA
GCGGCTCCGGCCACACTCGCTGCCCTCAATGCCCCTGCAGCACTCCAGTG
GCGCCATGTCGCGGCCGTCGGCCCCCCAGGAACGACCGGGCACCATCACC
GACGGCGAGGAACCCCCGGGCTCCATCCCCACTCCCCCAGGCGGCGACAC
ACCCTATGGCCCCACCAGACGCCCGCGTTCATTTCGCCACGGCCGACCCC
TGGTCCATTGTCGCTCCCCGCCGACAGCCCGGCCTGCCCTCCAACCGACA
GCCCGACCTGCCCTCCAACCGCTACGAGGAACTCCGTGTCTCCCGCCTGA
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