mRNA_F-serratus_M_contig70.18205.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig70.18205.1
Unique NamemRNA_F-serratus_M_contig70.18205.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig70contigF-serratus_M_contig70:908710..909129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size420
Cds size393
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932150.3477483-UTR-F-serratus_M_contig70:908709..9087361622932150.3477483-UTR-F-serratus_M_contig70:908709..908736Fucus serratus maleUTRF-serratus_M_contig70 908710..908736 +
1690964172.0126963-UTR-F-serratus_M_contig70:908709..9087361690964172.0126963-UTR-F-serratus_M_contig70:908709..908736Fucus serratus maleUTRF-serratus_M_contig70 908710..908736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932150.361586-CDS-F-serratus_M_contig70:908736..9091291622932150.361586-CDS-F-serratus_M_contig70:908736..909129Fucus serratus maleCDSF-serratus_M_contig70 908737..909129 +
1690964172.0252857-CDS-F-serratus_M_contig70:908736..9091291690964172.0252857-CDS-F-serratus_M_contig70:908736..909129Fucus serratus maleCDSF-serratus_M_contig70 908737..909129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig70.18205.1prot_F-serratus_M_contig70.18205.1Fucus serratus malepolypeptideF-serratus_M_contig70 908737..909129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig70.18205.1

>prot_F-serratus_M_contig70.18205.1 ID=prot_F-serratus_M_contig70.18205.1|Name=mRNA_F-serratus_M_contig70.18205.1|organism=Fucus serratus male|type=polypeptide|length=131bp
MTVEGKLKRSVGGVVCSFLYFLRVAVDLPWNVLAMCFMFVFSTGCAPYMW
LRWSFPVDRRIQIRKSASGFTHSPSKKNNPPASRWRFRLSFHACWPWSLR
RAIREAVHARKQRMQGGRWESYEVARRQFC*
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mRNA from alignment at F-serratus_M_contig70:908710..909129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig70.18205.1 ID=mRNA_F-serratus_M_contig70.18205.1|Name=mRNA_F-serratus_M_contig70.18205.1|organism=Fucus serratus male|type=mRNA|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig70:908710..909129+ (Fucus serratus male)
TATGTGTGTGGGTACCGGGATCTGTCTATGACAGTTGAGGGAAAGCTGAA
GCGATCCGTTGGAGGAGTGGTTTGTTCGTTTCTATACTTTCTCCGTGTTG
CCGTGGACCTACCTTGGAATGTGCTTGCGATGTGTTTTATGTTTGTTTTT
TCGACGGGGTGTGCGCCGTACATGTGGCTTCGATGGAGCTTTCCGGTGGA
CAGGAGAATCCAAATACGAAAGAGTGCCTCAGGTTTTACACATAGCCCCT
CCAAAAAAAACAATCCTCCAGCTTCGCGATGGAGATTCCGTCTGTCTTTT
CACGCCTGTTGGCCTTGGTCACTGAGACGAGCGATTCGCGAAGCAGTGCA
TGCAAGGAAGCAGCGCATGCAAGGAGGGCGATGGGAATCGTATGAGGTAG
CACGTCGTCAGTTTTGCTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig70:908710..909129+

>mRNA_F-serratus_M_contig70.18205.1 ID=mRNA_F-serratus_M_contig70.18205.1|Name=mRNA_F-serratus_M_contig70.18205.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig70:908710..909129+ (Fucus serratus male)
ATGACAGTTGAGGGAAAGCTGAAGCGATCCGTTGGAGGAGTGGTTTGTTC
GTTTCTATACTTTCTCCGTGTTGCCGTGGACCTACCTTGGAATGTGCTTG
CGATGTGTTTTATGTTTGTTTTTTCGACGGGGTGTGCGCCGTACATGTGG
CTTCGATGGAGCTTTCCGGTGGACAGGAGAATCCAAATACGAAAGAGTGC
CTCAGGTTTTACACATAGCCCCTCCAAAAAAAACAATCCTCCAGCTTCGC
GATGGAGATTCCGTCTGTCTTTTCACGCCTGTTGGCCTTGGTCACTGAGA
CGAGCGATTCGCGAAGCAGTGCATGCAAGGAAGCAGCGCATGCAAGGAGG
GCGATGGGAATCGTATGAGGTAGCACGTCGTCAGTTTTGCTAGATGACAG
TTGAGGGAAAGCTGAAGCGATCCGTTGGAGGAGTGGTTTGTTCGTTTCTA
TACTTTCTCCGTGTTGCCGTGGACCTACCTTGGAATGTGCTTGCGATGTG
TTTTATGTTTGTTTTTTCGACGGGGTGTGCGCCGTACATGTGGCTTCGAT
GGAGCTTTCCGGTGGACAGGAGAATCCAAATACGAAAGAGTGCCTCAGGT
TTTACACATAGCCCCTCCAAAAAAAACAATCCTCCAGCTTCGCGATGGAG
ATTCCGTCTGTCTTTTCACGCCTGTTGGCCTTGGTCACTGAGACGAGCGA
TTCGCGAAGCAGTGCATGCAAGGAAGCAGCGCATGCAAGGAGGGCGATGG
GAATCGTATGAGGTAGCACGTCGTCAGTTTTGCTAG
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