mRNA_F-serratus_M_contig70.18193.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig70.18193.1 vs. uniprot
Match: H3GP57_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP57_PHYRM) HSP 1 Score: 71.6 bits (174), Expect = 1.030e-9 Identity = 79/291 (27.15%), Postives = 129/291 (44.33%), Query Frame = 1
Query: 1 EAWSNLELHYRAKGTREILRLSHEING--KTMEPGSDPFKFMMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGKQYNRLLRQQ-----QDSKALSASRGTI--TANRENGKNRRPSNKFEGQCFNCGKRGHRAVECKSTKKK-----NEKPGXXXXXXXXXXGEWESDSGATFHMSHTRAGMSNYKKASPGTSIEVADGNI-LPVDGFGRIEVDLDQPGRTTKMVRMDDVAYVPGLSRNLVSTVKAVEQWGKPLIYYRNRAVL 828
EAW LE +RA+ L L + + TM S K + E+++L ++ G + E C ++ L A YE + + L + +VGK +RQ+ +++ AL A++G T ++ G R+PS G CFNCGK GH A +C+S +E W DSGA+ HM TR +Y + S+ A + L V G G +++ + GR+ R+++ +V LS+NL S A G +I +++ V+
Sbjct: 67 EAWDKLEKFHRAQDVANRLWLKEKFSSFKYTMSSVS---KHVTELEQLVLEMKSAGCEPSDE-DVCATLLRSLPASYESLVQAFRMSMTELK---LTDLVGKLIAEEVRQKDSTRIEEATALLANKGYAKDTKKKQQGGRRKPS----GACFNCGKMGHYARDCRSQASPENEVLDESNVAFNVTEMFASESWVMDSGASTHMCKTREAFKDYTPMTKSYSVASAKSSAKLKVLGHGTVQLRV-WSGRSWINARLENALHVQDLSKNLFSLTAATAH-GVTVIMTQDKCVI 344
BLAST of mRNA_F-serratus_M_contig70.18193.1 vs. uniprot
Match: A0A1Y1K2V0_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1K2V0_PHOPY) HSP 1 Score: 71.6 bits (174), Expect = 1.130e-9 Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 2
Query: 926 HRMLAHPSEAITRKMAAMMGIETTGQWGACETCFQVKAKRHA-VPKKTDERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFVKKKSDTTAAL 1234
H ML H + K+ GIE T Q CE C VK K+H V + +RA +G+ VD+ GPM+ +S GG+ Y + F D ++F+++KF+K+KS+TT +
Sbjct: 439 HEMLGHQNRVQVEKVLNRNGIEYTKQDFFCEAC--VKGKQHRKVFQVRQQRAQREGEVMNVDLCGPMEITSYGGSRYFICFTCDYSKFRLIKFLKEKSETTKGI 540
BLAST of mRNA_F-serratus_M_contig70.18193.1 vs. uniprot
Match: UPI001F43F645 (hypothetical protein n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F43F645) HSP 1 Score: 68.9 bits (167), Expect = 5.310e-9 Identity = 43/152 (28.29%), Postives = 74/152 (48.68%), Query Frame = 1
Query: 376 RENGKNRRPSNK-FEGQCFNCGKRGHRAVECKSTKKKNEKPGXXXXXXXXXXG---------------EWESDSGATFHMSHTRAGMSNYKKASPGTSIEVADGNILPVDGFGRIEVDLDQPGRTTKMVRMDDVAYVPGLSRNLVSTVKAVE 783
R +GK + P+ K F+G C+NCGK GH+A +C++ KK EK EW DSGAT H+ + + Y A P + + + V+G+G++ + + + K++ +++V +VP + +NLVS V+
Sbjct: 246 RHSGKEKNPNKKKFKGNCYNCGKAGHKAPDCRAPKKDKEKNKGQANMVEDVDDLCAMLSECNMVGNPKEWWLDSGATRHVCAVKEAFTTYTPAGPNEELYMGNTATAKVEGYGKVLLKMT----SGKVLTLNNVMHVPSIRKNLVSAALLVK 393
BLAST of mRNA_F-serratus_M_contig70.18193.1 vs. uniprot
Match: A0A0J7KAH3_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KAH3_LASNI) HSP 1 Score: 68.9 bits (167), Expect = 7.980e-9 Identity = 69/294 (23.47%), Postives = 127/294 (43.20%), Query Frame = 1
Query: 1 EAWSNLELHYRAKGTREILRLSHEINGKTMEPGSDPFKFMMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGKQYNRLLRQQQDSKALSASRGTITANRENGKNRRPSNKFEGQCFNCGKRGHRAVECKSTKKKNEKPGXXXXXXXXXX-------GEWESDSGATFHMSHTRAGMSNYKKASPGTSIEVADGNILPVDGFGRIEVDLDQPGRTTKMVRMDDVAYVPGLSRNLVSTVKAVEQWGKPLIYYRNRAVLGLPGEESLVFK 861
+AW NL+ + KG + L + + + +++ + A L L D V + +++SGL +Y LE++ + I+ + ++ +Q +++A S+ T ++ +K +G+CF CGK GH A +C++ + + K EW DSGA+ HM+ + + + KK +I A+ L G E+ + G K++R+++V YVPGL+ NL+S V++ K I + GE + V K
Sbjct: 81 QAWENLKNAFEDKGLTRKVGLLRILTSTKFQDCNSVEEYVNMIMTTAHTLKEL-DFEVKDEMIGALLLSGLPDEYRPMIMGLESSGTAITADAIKVKILQEVKHGGKQSTETEAALYSKARATR-------KKSQDKVKGKCFACGKTGHFAAKCRNKARDDNKEKDSSTHKVFATFAQAGKNDEWYLDSGASTHMTGWSSCLKDMKKCDK--TITAANRGQLKAVAHGVAEIGVTVNGGE-KVIRVENVLYVPGLAANLLSVGVIVQRDYKVTITKNGCTIHDADGELTAVAK 363
BLAST of mRNA_F-serratus_M_contig70.18193.1 vs. uniprot
Match: A0A0J8B0L4_BETVV (CCHC-type domain-containing protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B0L4_BETVV) HSP 1 Score: 65.5 bits (158), Expect = 8.030e-9 Identity = 50/135 (37.04%), Postives = 66/135 (48.89%), Query Frame = 1
Query: 397 RPSNKFEGQCFNCGKRGHRAVECKSTKKKNEKPGXXXXXXXXXXGEW-----ES---DSGATFHMSHTRAGMSNYKKASPGTSIEVADGNILPVDGFGRIEVDLDQPGRTTKMVRMDDVAYVPGLSRNLVSTVKA 777
+P + G+CFNCGKRGH A +C+S KKK E E ES DSGA+ HM+ + +SN+ + I ADG + G G ++V GR K V + DV YVP L NL+S A
Sbjct: 57 KPKRQPRGRCFNCGKRGHFAKDCRSPKKKEESSSTDELAFVAGDQEELYAVAESCYVDSGASRHMTGNKGLLSNFVELLDAVKIVTADGRTICGIGTGDMKV-----GRG-KTVTLKDVLYVPDLKMNLLSVSAA 185
BLAST of mRNA_F-serratus_M_contig70.18193.1 vs. uniprot
Match: A0A8J6DA37_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6DA37_9ROSI) HSP 1 Score: 67.4 bits (163), Expect = 2.410e-8 Identity = 33/71 (46.48%), Postives = 41/71 (57.75%), Query Frame = 2
Query: 1007 GACETCFQVKAKRHAVPKKTDERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFVKKKSD 1219
G CE C K R P T RAS K + DV GPM+ SL GN Y ++F+DDCTR+ V F+K KS+
Sbjct: 21 GVCEVCQMGKQARLPFPTNTSWRASTKLELVHTDVCGPMRTESLSGNRYFILFIDDCTRYCWVYFLKHKSE 91
BLAST of mRNA_F-serratus_M_contig70.18193.1 vs. uniprot
Match: A0A0J7K4F4_LASNI (Rna-dependent dna polymerase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K4F4_LASNI) HSP 1 Score: 67.0 bits (162), Expect = 3.210e-8 Identity = 74/300 (24.67%), Postives = 123/300 (41.00%), Query Frame = 1
Query: 4 AWSNLELHYRAKGTREILRLSHEINGKTMEPGSDPFKFMMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGKQYNRLLRQ-QQDSKALSASRGT------ITANRENGKNRRPS----------NKFEGQCFNCGKRGHRAVECKSTKKKNEKPGXXXXXXXXXXG--------EWESDSGATFHMSHTRAGMSNYKKASPGTSIEVADGNILPVDGFGRIEVDLDQPGRTTKMVRMDDVAYVPGLSRNLVSTVKAVEQWGKPLIYYRNRAVL 828
AW L+ + +KG L ++ P + + E AG L G + EL ++++ L YE +E D +E + K RQ ++D+K +A GT N + GK RP+ KF+G+CFNC K GHR+ +C+S KK ++ W DS AT HM + + K A+ + + G + ++L R K+++++++ YVP L NL+S V V + G + + +NRA +
Sbjct: 84 AWDILKGVFESKGPVRKATLYKQLLRMEKGPNITMTQHVNEFSSKAGQLEEAGIEIPEELLS-IMLLGSLPTQYENFSVAIEYRDDI---PPLEVLKAKPKEEEARQNERDTK--TADNGTKNDALLARGNTDRGKQSRPNWKGNNTKTNFQKFDGKCFNCDKIGHRSRDCRSKKKSDKAANSDDVLTAIACNAELIRKSESWCLDSSATRHMCNDKQKFEVINKDEQSRVYTAAEHYVKSIK-TGNVSLNLKANQRENKVIKLENILYVPELRNNLLS-VPTVTERGYNVTFNKNRAYI 375
BLAST of mRNA_F-serratus_M_contig70.18193.1 vs. uniprot
Match: A0A067T6Q3_GALM3 (Uncharacterized protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T6Q3_GALM3) HSP 1 Score: 66.2 bits (160), Expect = 6.600e-8 Identity = 38/114 (33.33%), Postives = 56/114 (49.12%), Query Frame = 2
Query: 896 ARDGSRGRRLHRMLAHPSEAITRKMAA---MMGIE---TTGQWGACETCFQVKAKRHAVPKKTDERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFVKKKSD 1219
A D S + HR H S ++ A + G+E +T CE C Q K PK+ + R+ G+R DV GP S+G + Y + F+DDCTRF + F++KK +
Sbjct: 424 ASDKSSWDQWHRRFGHISIKSLERLDAEGLVHGLEIDQSTIPSHTCEACIQAKQAHKPFPKEAEHRSETPGERIMSDVWGPAPTESIGKSKYYISFIDDCTRFGTMLFLRKKDE 537
BLAST of mRNA_F-serratus_M_contig70.18193.1 vs. uniprot
Match: A0A8J5YZW8_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YZW8_9ROSI) HSP 1 Score: 65.9 bits (159), Expect = 7.720e-8 Identity = 37/102 (36.27%), Postives = 51/102 (50.00%), Query Frame = 2
Query: 926 HRMLAHPSEAITRKMAAMMGIE----TTGQWGACETCFQVKAKRHAVPKKTDERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFVKKKSD 1219
H+ L H + +M + +E T CE C K R P T RAS K + DV GPM+ SL GN Y ++F+DDCTR+ + F+K KS+
Sbjct: 122 HQRLGHTNFKSMAQMVSKEMVENFTKTVQSEDVCEVCQMGKQARLPFPTNTTWRASSKLELVHTDVCGPMRTESLSGNRYFILFIDDCTRYCWIYFLKHKSE 223
BLAST of mRNA_F-serratus_M_contig70.18193.1 vs. uniprot
Match: A0A8J5YG39_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YG39_9ROSI) HSP 1 Score: 65.5 bits (158), Expect = 1.130e-7 Identity = 37/102 (36.27%), Postives = 52/102 (50.98%), Query Frame = 2
Query: 926 HRMLAHPSEAITRKMAAMMGIE----TTGQWGACETCFQVKAKRHAVPKKTDERASVKGQRFFVDVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFVKKKSD 1219
H+ L+H + +M + +E T G E C K R P T RAS K + DV GPM+ SL GN Y ++F+DDCT++ V F+K KS+
Sbjct: 383 HQRLSHANFNSMARMVSKKMVENFTKTVQNEGVYEVCQMGKQARLPFPTNTSWRASTKLELVHTDVCGPMRTESLSGNRYFILFIDDCTKYCWVYFLKHKSE 484 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig70.18193.1 >prot_F-serratus_M_contig70.18193.1 ID=prot_F-serratus_M_contig70.18193.1|Name=mRNA_F-serratus_M_contig70.18193.1|organism=Fucus serratus male|type=polypeptide|length=367bp MEPGSDPFKFMMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECback to top mRNA from alignment at F-serratus_M_contig70:610850..612379+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig70.18193.1 ID=mRNA_F-serratus_M_contig70.18193.1|Name=mRNA_F-serratus_M_contig70.18193.1|organism=Fucus serratus male|type=mRNA|length=1530bp|location=Sequence derived from alignment at F-serratus_M_contig70:610850..612379+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig70:610850..612379+ >mRNA_F-serratus_M_contig70.18193.1 ID=mRNA_F-serratus_M_contig70.18193.1|Name=mRNA_F-serratus_M_contig70.18193.1|organism=Fucus serratus male|type=CDS|length=2202bp|location=Sequence derived from alignment at F-serratus_M_contig70:610850..612379+ (Fucus serratus male)back to top |