mRNA_F-serratus_M_contig70.18190.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig70.18190.1
Unique NamemRNA_F-serratus_M_contig70.18190.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig70contigF-serratus_M_contig70:507747..510790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1331
Cds size939
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig70.18190.1prot_F-serratus_M_contig70.18190.1Fucus serratus malepolypeptideF-serratus_M_contig70 508118..510675 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932149.1228082-UTR-F-serratus_M_contig70:507746..5078891622932149.1228082-UTR-F-serratus_M_contig70:507746..507889Fucus serratus maleUTRF-serratus_M_contig70 507747..507889 -
1690964171.6374216-UTR-F-serratus_M_contig70:507746..5078891690964171.6374216-UTR-F-serratus_M_contig70:507746..507889Fucus serratus maleUTRF-serratus_M_contig70 507747..507889 -
1622932149.1391385-UTR-F-serratus_M_contig70:507983..5081171622932149.1391385-UTR-F-serratus_M_contig70:507983..508117Fucus serratus maleUTRF-serratus_M_contig70 507984..508117 -
1690964171.6527035-UTR-F-serratus_M_contig70:507983..5081171690964171.6527035-UTR-F-serratus_M_contig70:507983..508117Fucus serratus maleUTRF-serratus_M_contig70 507984..508117 -
1622932149.22948-UTR-F-serratus_M_contig70:510675..5107901622932149.22948-UTR-F-serratus_M_contig70:510675..510790Fucus serratus maleUTRF-serratus_M_contig70 510676..510790 -
1690964171.7114909-UTR-F-serratus_M_contig70:510675..5107901690964171.7114909-UTR-F-serratus_M_contig70:510675..510790Fucus serratus maleUTRF-serratus_M_contig70 510676..510790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932149.1576357-CDS-F-serratus_M_contig70:508117..5083771622932149.1576357-CDS-F-serratus_M_contig70:508117..508377Fucus serratus maleCDSF-serratus_M_contig70 508118..508377 -
1690964171.668399-CDS-F-serratus_M_contig70:508117..5083771690964171.668399-CDS-F-serratus_M_contig70:508117..508377Fucus serratus maleCDSF-serratus_M_contig70 508118..508377 -
1622932149.1816866-CDS-F-serratus_M_contig70:509594..5098431622932149.1816866-CDS-F-serratus_M_contig70:509594..509843Fucus serratus maleCDSF-serratus_M_contig70 509595..509843 -
1690964171.6835063-CDS-F-serratus_M_contig70:509594..5098431690964171.6835063-CDS-F-serratus_M_contig70:509594..509843Fucus serratus maleCDSF-serratus_M_contig70 509595..509843 -
1622932149.2038534-CDS-F-serratus_M_contig70:510245..5106751622932149.2038534-CDS-F-serratus_M_contig70:510245..510675Fucus serratus maleCDSF-serratus_M_contig70 510246..510675 -
1690964171.6967945-CDS-F-serratus_M_contig70:510245..5106751690964171.6967945-CDS-F-serratus_M_contig70:510245..510675Fucus serratus maleCDSF-serratus_M_contig70 510246..510675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig70.18190.1

>prot_F-serratus_M_contig70.18190.1 ID=prot_F-serratus_M_contig70.18190.1|Name=mRNA_F-serratus_M_contig70.18190.1|organism=Fucus serratus male|type=polypeptide|length=313bp
MAEGYVGESTAKLFLELASVGIELDRIATAFYLRQASIHQNHLQESLVAS
KGMLDAVGTALINRCEQGTAQHERWTKIIHDMNTKFLATCSLQRPGEALA
IAAAATTPARPARLPSAIPQVTTTVGGTPTSSQVAGGADTVVPAAGGAEI
PTVASGNSGAVPASLLDRAGAEWGGQQPGSAPPRISSHEGTRRGQGADAL
LRLSGSVDVAQQNHESTDEPEGDNPIVAAYDHVTAIAEHSARARPIDAEV
LGPRKQLLKTANATWSRFLAQAQTPVPRLGDDAGAGRGTLVQFPSPGLRS
VGSPGEAPSIGR*
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mRNA from alignment at F-serratus_M_contig70:507747..510790-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig70.18190.1 ID=mRNA_F-serratus_M_contig70.18190.1|Name=mRNA_F-serratus_M_contig70.18190.1|organism=Fucus serratus male|type=mRNA|length=3044bp|location=Sequence derived from alignment at F-serratus_M_contig70:507747..510790- (Fucus serratus male)
ATTCTTCTCACGACTGGCTGAGCTACCTTCCTTAGCAGAAGCGCTGTATG
CCTTAAGTGAGCCCCGTATTTCCTCAGTCAACCCCAAGATTTCTGTATAA
AACTGATTCCCTACTATGGCTGAGGGGTATGTGGGTGAAAGTACGGCCAA
ATTGTTTCTTGAGCTTGCCTCCGTGGGGATCGAGCTCGACAGAATCGCAA
CCGCCTTCTATCTCCGACAAGCGTCAATCCACCAGAATCACCTTCAAGAA
AGCCTCGTCGCATCAAAGGGTATGCTCGATGCAGTAGGAACGGCTCTAAT
AAATCGCTGTGAGCAGGGAACGGCACAACATGAGCGATGGACTAAGATTA
TTCACGACATGAACACCAAGTTCCTTGCAACGTGCAGCCTTCAACGACCA
GGAGAGGCGCTTGCTATCGCTGCCGCAGCAACGACCCCGGCGCGGCCAGC
CCGCTTGCCAAGCGCGATTCCCCAAGTCACCACTACTGTGGGCGGAACCC
CAACTTCTTCTCAGGTTGCAGGCGGCGCAGATACCGTCGTTCCAGGTATA
ATGTGCAGCCATGCAGCAGGAATCTCCAGGACTCCTGGCGAAGCAGGGAA
GAACAGTTACTCCTTCATAACCTAGAAGCGACGACGCATGCTAAGGATAA
CCCGGTCCGCCGACGGTCGCGCCGCCAGGGTGCGGGCGACAAGCTCACAA
AGGTTCACACAACTAGTACGCGGCTGACTGCGATGTCGAGACCACCCTAT
CTTTGCGTGGTCTCGAGGATGCGATCCTTTCAACGAGAGGGATCATTGAA
ACACGCGTCCACGACGGTTTTTGCATCCACACCTCCACTATTTATACAAC
AGATCGACTGACCGCCTTTACCGACCCGTTGTTTGAGTTCTGTTGTACCC
ACGACGATACATCAATATTGTACCACAATCCGCTTGCAATACTACAGCAG
CAGGTGGAGCAGAAATCCCAACGGTAGCATCGGGAAACAGCGGCGCTGTT
CCGGCGAGCCTCTTAGACCGCGCCGGCGCCGAGTGGGGGGGGCAGCAGCC
CGGCTCAGCGCCGCCCCGCATCAGCAGCCACGAGGGAACCCGCCGGGGCC
AAGGGGCCGATGCACTGCTTCGCCTCAGCGGGAGCGTCGACGTTGCACAA
CAGAACCACGAGTCGACGGATGAACCGGAGGGAGACAACCCTATAGGTGA
AAAGAAGTTCGTCGCGCTTCGGGATCACGGTCTGTATCATGGAGATATTT
GCATGTCATCGCAGGTTTTCACATGATATCGTGAGGCATTTTCCCATCTG
CCGTGCAGGAGCCTTGCCGCAGGAATAACGCTGTCTTTCTGATAGACCAC
CAGCCGTCCTTGTCCGTGTAATTGGTAAGCTTTGAGCAAAAAGCACCGCC
TCGTGTGTTAGGGTGTGGCATTTGGCGTATTCTTCCAGAAAACAACAGTG
GTATCCTATGGGTAAAGAAAAATCAGAACGCGCCTATACCTTCTGAGCAT
CCTCCATGTTGATGGTATTGTGCCAACTCAAGTAGATGGTGTGTGAGTCG
GAGATCTAGAAGGATTACTAGCTTCTGAAATCATAGAGAATGTTCTGGAG
ATATCTCCTGAAACTCCTGGCATTTCACGCGATGATGTGGGAGATCTTGA
AGTATCGTAGCCAACCTAGTCCACAGAAGCAGTTTCTACTGTCAAGTCCA
GGACGGGAGGCTGCGTTTCTCGTAGGACAAGCCCCCTCGTGTTCACTTTC
CCGTCGTGTCCATCTCCCGAGGTCTTGTTGGTAATTTTTTTTCCACCCTA
TCCTGTTAAAAGTGTTGGTGATGTTTTTTTTCTTCAATGTATACATTCTT
CATTTTCAACGCGTCTAGTCTAAAGTACCAGAGCCGGGAAGCCATGTCAC
TGGCCTCCACACGAGACTTTTGAATAGGGAACCTGCCGTGTTTTTTTGGG
GGTTGTTGCACGTTACCTGAGGTTTTCACATGATCTCAGGCATTTTACGA
CCTGCTTTGCGAAAGCTCTACCGCACGAGTAACGCTTTATTTCTCTCTCT
TGAACAGGGTATCAAGTGACTGTTTGGGGTTTTGTACGTCAGCTGAGGTT
TTCGCACGATGTCAGGCATTTTCCGACCTGCCGTACCAGAGCACTGCCGC
ATGAATCAACACCTTCTTTTTGCTACACTACCCGCTGTTCAGGGGGTCGT
CTTTGTGCGTGCGGTTTCGGAGGCGTCGACAAAATACCGCTGCCTCGTGG
TGTAGTAGGTTTCATATATTCATAGTCTACTCGAGACCCCCACGATAACA
CAACACTTAACCGCGAAACATGTTACAAGCACCCGATGACATCGTCCCAC
TTCTCTCCCTCGCTCTTTCCTTCCCCTCCTTTTGGCACCAAAATGCTTCT
GTGAAACCAACAGTTGCAGCGTACGATCACGTCACAGCGATCGCAGAGCA
CAGCGCTCGCGCAAGGCCCATCGACGCTGAGGTGCTCGGTCCCAGGAAGC
AGCTATTGAAGACCGCCAACGCAACATGGAGTCGGTTTCTTGCTCAGGCT
CAGACTCCAGTGCCGAGGTTAGGCGATGACGCCGGGGCGGGTCGTGGTAC
TCTTGTTCAGTTCCCTAGTCCCGGGTTGAGAAGCGTCGGTTCCCCCGGTG
AGGCTCCTTCAATTGGCCGTTGACCAGGCCCACCGGGCATCACCGTGGGG
ATACGCATGGTATTTTATTTGTGCCGCTCGAGTTGTGCGGCGGTGGGTCC
CTGTTCGGTTAAAGTAATTTAAGCAAATATCACCGTTGTGTGTGTGTATG
TGTGTGTGTGTGTGTGTTTATTAAATTCCACGTAACCGCGCAATCCGGCC
CTGTCATCCCAGTCATTATGGATCAATGTGTCTAATCGTGTGTGTAGAGA
GTGTGTGTGTATTTATTAAATTACACGTAACCGCGCAATCCGGCCCTGTC
ATCCCAGTCATTATGGATGTGTGTGTGTGTAGAGAGAGAAAGAGAGTACT
CCCTTGGCTCGTGGATGTCATGTCGGGGCGCCACTTGTACGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig70:507747..510790-

>mRNA_F-serratus_M_contig70.18190.1 ID=mRNA_F-serratus_M_contig70.18190.1|Name=mRNA_F-serratus_M_contig70.18190.1|organism=Fucus serratus male|type=CDS|length=1878bp|location=Sequence derived from alignment at F-serratus_M_contig70:507747..510790- (Fucus serratus male)
ATGGCTGAGGGGTATGTGGGTGAAAGTACGGCCAAATTGTTTCTTGAGCT
TGCCTCCGTGGGGATCGAGCTCGACAGAATCGCAACCGCCTTCTATCTCC
GACAAGCGTCAATCCACCAGAATCACCTTCAAGAAAGCCTCGTCGCATCA
AAGGGTATGCTCGATGCAGTAGGAACGGCTCTAATAAATCGCTGTGAGCA
GGGAACGGCACAACATGAGCGATGGACTAAGATTATTCACGACATGAACA
CCAAGTTCCTTGCAACGTGCAGCCTTCAACGACCAGGAGAGGCGCTTGCT
ATCGCTGCCGCAGCAACGACCCCGGCGCGGCCAGCCCGCTTGCCAAGCGC
GATTCCCCAAGTCACCACTACTGTGGGCGGAACCCCAACTTCTTCTCAGG
TTGCAGGCGGCGCAGATACCGTCGTTCCAGATGGCTGAGGGGTATGTGGG
TGAAAGTACGGCCAAATTGTTTCTTGAGCTTGCCTCCGTGGGGATCGAGC
TCGACAGAATCGCAACCGCCTTCTATCTCCGACAAGCGTCAATCCACCAG
AATCACCTTCAAGAAAGCCTCGTCGCATCAAAGGGTATGCTCGATGCAGT
AGGAACGGCTCTAATAAATCGCTGTGAGCAGGGAACGGCACAACATGAGC
GATGGACTAAGATTATTCACGACATGAACACCAAGTTCCTTGCAACGTGC
AGCCTTCAACGACCAGGAGAGGCGCTTGCTATCGCTGCCGCAGCAACGAC
CCCGGCGCGGCCAGCCCGCTTGCCAAGCGCGATTCCCCAAGTCACCACTA
CTGTGGGCGGAACCCCAACTTCTTCTCAGGTTGCAGGCGGCGCAGATACC
GTCGTTCCAGCAGCAGGTGGAGCAGAAATCCCAACGGTAGCATCGGGAAA
CAGCGGCGCTGTTCCGGCGAGCCTCTTAGACCGCGCCGGCGCCGAGTGGG
GGGGGCAGCAGCCCGGCTCAGCGCCGCCCCGCATCAGCAGCCACGAGGGA
ACCCGCCGGGGCCAAGGGGCCGATGCACTGCTTCGCCTCAGCGGGAGCGT
CGACGTTGCACAACAGAACCACGAGTCGACGGATGAACCGGAGGGAGACA
ACCCTATAGCAGCAGGTGGAGCAGAAATCCCAACGGTAGCATCGGGAAAC
AGCGGCGCTGTTCCGGCGAGCCTCTTAGACCGCGCCGGCGCCGAGTGGGG
GGGGCAGCAGCCCGGCTCAGCGCCGCCCCGCATCAGCAGCCACGAGGGAA
CCCGCCGGGGCCAAGGGGCCGATGCACTGCTTCGCCTCAGCGGGAGCGTC
GACGTTGCACAACAGAACCACGAGTCGACGGATGAACCGGAGGGAGACAA
CCCTATAGTTGCAGCGTACGATCACGTCACAGCGATCGCAGAGCACAGCG
CTCGCGCAAGGCCCATCGACGCTGAGGTGCTCGGTCCCAGGAAGCAGCTA
TTGAAGACCGCCAACGCAACATGGAGTCGGTTTCTTGCTCAGGCTCAGAC
TCCAGTGCCGAGGTTAGGCGATGACGCCGGGGCGGGTCGTGGTACTCTTG
TTCAGTTCCCTAGTCCCGGGTTGAGAAGCGTCGGTTCCCCCGGTGAGGCT
CCTTCAATTGGCCGTTGATTGCAGCGTACGATCACGTCACAGCGATCGCA
GAGCACAGCGCTCGCGCAAGGCCCATCGACGCTGAGGTGCTCGGTCCCAG
GAAGCAGCTATTGAAGACCGCCAACGCAACATGGAGTCGGTTTCTTGCTC
AGGCTCAGACTCCAGTGCCGAGGTTAGGCGATGACGCCGGGGCGGGTCGT
GGTACTCTTGTTCAGTTCCCTAGTCCCGGGTTGAGAAGCGTCGGTTCCCC
CGGTGAGGCTCCTTCAATTGGCCGTTGA
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