mRNA_F-serratus_M_contig70.18188.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig70.18188.1
Unique NamemRNA_F-serratus_M_contig70.18188.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig70contigF-serratus_M_contig70:498787..502021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1721
Cds size1719
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig70.18188.1prot_F-serratus_M_contig70.18188.1Fucus serratus malepolypeptideF-serratus_M_contig70 498787..502020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932149.019799-CDS-F-serratus_M_contig70:498786..4997491622932149.019799-CDS-F-serratus_M_contig70:498786..499749Fucus serratus maleCDSF-serratus_M_contig70 498787..499749 +
1690964171.5884151-CDS-F-serratus_M_contig70:498786..4997491690964171.5884151-CDS-F-serratus_M_contig70:498786..499749Fucus serratus maleCDSF-serratus_M_contig70 498787..499749 +
1622932149.0379004-CDS-F-serratus_M_contig70:500261..5003601622932149.0379004-CDS-F-serratus_M_contig70:500261..500360Fucus serratus maleCDSF-serratus_M_contig70 500262..500360 +
1690964171.6026566-CDS-F-serratus_M_contig70:500261..5003601690964171.6026566-CDS-F-serratus_M_contig70:500261..500360Fucus serratus maleCDSF-serratus_M_contig70 500262..500360 +
1622932149.0617485-CDS-F-serratus_M_contig70:500872..5013871622932149.0617485-CDS-F-serratus_M_contig70:500872..501387Fucus serratus maleCDSF-serratus_M_contig70 500873..501387 +
1690964171.613242-CDS-F-serratus_M_contig70:500872..5013871690964171.613242-CDS-F-serratus_M_contig70:500872..501387Fucus serratus maleCDSF-serratus_M_contig70 500873..501387 +
1622932149.0823479-CDS-F-serratus_M_contig70:501878..5020201622932149.0823479-CDS-F-serratus_M_contig70:501878..502020Fucus serratus maleCDSF-serratus_M_contig70 501879..502020 +
1690964171.6227329-CDS-F-serratus_M_contig70:501878..5020201690964171.6227329-CDS-F-serratus_M_contig70:501878..502020Fucus serratus maleCDSF-serratus_M_contig70 501879..502020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig70.18188.1

>prot_F-serratus_M_contig70.18188.1 ID=prot_F-serratus_M_contig70.18188.1|Name=mRNA_F-serratus_M_contig70.18188.1|organism=Fucus serratus male|type=polypeptide|length=573bp
GGVTSTAGSQSQRAEDTSVPRGLRTRESGAPSTRPAMTAPNQTTFKHAGP
DPYEVKTFYDVGVRMSSAPEDMLQHSISPEVESLSMPSPLPQSVVARDLD
WSRGWYDPEAVSETGDAIGAVSAAFEYHTDAAKTGRQEAFVTAVPSTPAV
SGQDASVGGVCSSSPVTVCTSFGIEDSYCNVKDLVGEQSGCVVVEPDADC
VATPGEAFFEAARPSTANVRSSTGVAERSVGIGTSNAPLDTLDSWRGWEG
KASSSNDSGGRLRSNLSQFDEKRWPSVVVGNGTADMESCRLRDGAGAGGG
GRNSLDALRSFISTRRVHLLKDHPIEQRIQKHGGVPAAYQPLTFSQASSR
QDRKKEAVATSLRPTPLCCHQKLPPLRTGEVILAGTTLASVKQAIARAGR
EARAAIVRTLAANAAMDFTHHSNKRSPQSDHREGCSVQTCRRTAALTKAT
KERPATAVASGNGELCSLRSQTRQQRCARRPSGGDQRANSEGGRRRPPGR
PLHEPREHFHQRDGDSGTRENAIELVHLDRGIEPEKSPIRRYSKCPKTPP
RKNEGGGSRGETTAAVDPSLSER
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mRNA from alignment at F-serratus_M_contig70:498787..502021+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig70.18188.1 ID=mRNA_F-serratus_M_contig70.18188.1|Name=mRNA_F-serratus_M_contig70.18188.1|organism=Fucus serratus male|type=mRNA|length=3235bp|location=Sequence derived from alignment at F-serratus_M_contig70:498787..502021+ (Fucus serratus male)
GGAGGAGTTACCAGTACCGCCGGGTCGCAGTCCCAAAGGGCAGAAGATAC
TAGTGTCCCGAGAGGTCTGCGAACTCGTGAATCTGGAGCGCCATCGACGC
GTCCAGCTATGACGGCCCCGAATCAGACAACGTTTAAACACGCGGGTCCC
GACCCTTACGAGGTGAAGACTTTCTACGACGTTGGCGTTCGAATGTCATC
GGCTCCAGAAGACATGCTGCAGCACTCGATCTCGCCAGAAGTAGAATCGC
TGTCGATGCCTTCTCCGCTGCCTCAGTCGGTGGTAGCACGCGACTTGGAT
TGGTCAAGGGGATGGTACGACCCCGAGGCGGTATCCGAGACAGGGGACGC
CATCGGAGCAGTCAGTGCTGCTTTCGAGTACCATACTGACGCTGCAAAGA
CAGGGCGACAAGAGGCGTTCGTAACAGCTGTCCCTTCGACCCCTGCGGTA
TCGGGGCAAGACGCAAGCGTTGGAGGGGTTTGTTCATCATCTCCTGTGAC
TGTATGCACCTCGTTTGGGATCGAAGATTCCTACTGTAACGTCAAAGACC
TCGTTGGAGAACAATCCGGGTGCGTTGTTGTGGAACCAGACGCTGATTGT
GTTGCGACACCGGGGGAAGCGTTCTTCGAAGCAGCGCGCCCATCGACCGC
GAACGTACGCAGTTCTACAGGTGTTGCCGAGCGGAGTGTCGGTATCGGCA
CTTCTAACGCTCCGCTAGACACCTTAGATTCATGGAGAGGGTGGGAAGGG
AAAGCAAGCAGTAGCAATGACTCCGGTGGTAGACTGCGCTCAAACCTTTC
TCAGTTTGACGAGAAGCGATGGCCGTCAGTGGTTGTTGGCAACGGAACAG
CCGACATGGAATCGTGCCGACTTCGCGACGGAGCTGGGGCTGGTGGCGGC
GGCAGGAACTCTCTCGATGCCCTAAGGTCCTTCATATCTACTCGTCGTGT
CCACTTGCTCAAGGTAGCCGAATCATTTTTTCGGAATGGGAGGTATTAGA
GCCCCCAGCCTCAATGATATATATTAACATTGCGGTACATGTTTCCGAAA
TCACGAAGAACAGCCCAGCGTCGAGCGAGTAAAATTCGATAGGTCACGCG
CCCTAAAAAAGCGACGTCGTGGGCAGGTCGGCTGACACGGTGTTGTGAAC
TTCGGGGAAAGCCATGACATGTCTCCGTATGTTTACAATAGTTTGAAAAT
CAGGGTGTGCAAACCGTCGGGCCCTATAAATAAACATCTGCGCAGGCATC
TCCAGCATGTAAACAAAAATGTACCTCTATGTATACACATGCTGCGCGCA
CCCCCTTTCGATGATGTCCAGATTTCGTGCACCGTTCAAGTCAAGTGATA
CGGTAACCATGAACGTAGTTTAAAAGAAGCCCAGACCGCACGCTCTTCCA
TAAACCTATTTTTTGTAATTTCTAACCTTGCAAAAGAAAGCCACTGTGCG
TTCGACGTTTAACGCGCGACCGTAGGATCATCCCATCGAGCAACGTATAC
AGAAGCACGGAGGTGTCCCCGCCGCCTACCAGCCGCTTACCTTCTCCCAA
GCGTCTAGCCGCCAGGACCGGAAGGTAAGCGTATTGTCTGTTTTTCCTGT
ACTTACTTTGCCACCGTTTACACAGAAGACATAATACGGTCGTCGCTAAT
GTTACCCTTGAAAATCGTTTTTTTCTGTCTTGGAACCTTCTTGGAACAAC
TTTTTTTTATATATAATCCCGTGACGACTTGGCCTGGCATGCTTCCCGCC
CCCGTTCCTCGACACGCGCTAGCACGCAAGAGTTGGTTATACACTCAACC
CCGCAGGATCGGTCCGTATTCGTCATCGATTTCATTATATAGCCGATGGT
AACGATAGCAGCCGCGGTTACCTACCGACTCGTCCCCAAGCCCCTGGCGA
GAAAATATAACACTCCTTGAATAGAAGATATTTGAGGTTTATATGATATT
TCGTAGTGTTTTAGGAACTTAGGTCTACATTGTTTATCGCCGCCTCTGAT
AAAAGCAACCGCCGGTGAATCCATCAATCATTTCTCCGCACAATCCAATG
ATATCAACGGTCCCTAACCCTCGGTCGCCGAGAAAGAAAGAAGCGGTTGC
CACTTCTTTGCGCCCGACACCGCTGTGCTGTCATCAAAAACTACCGCCGC
TGAGAACGGGGGAGGTGATCTTAGCGGGCACCACGCTAGCCTCGGTGAAG
CAGGCAATCGCGCGAGCGGGCCGAGAAGCTCGCGCGGCTATTGTGCGAAC
TTTAGCGGCGAACGCTGCGATGGACTTCACTCATCACAGCAATAAGCGAT
CGCCGCAAAGTGACCATCGGGAGGGCTGCAGCGTCCAAACCTGCCGACGC
ACCGCAGCACTTACGAAGGCGACAAAAGAACGCCCAGCCACTGCCGTGGC
TAGCGGGAATGGGGAATTATGCAGTCTAAGAAGTCAAACGCGGCAACAGC
GTTGCGCTCGTCGACCCTCTGGTGGCGATCAGAGGGCAAACTCAGAGGGC
GGACGACGGCGTCCACCGGGGCGGCCGCTGCATGAGCCTCGGGAGCATTT
CCATCAGCGCGATGGTGATAGTGGTACTCGAGAAAATGCGATAGAACTGG
TGTGAGTAATCAATCGTGTTTTGGCGTCCACCGTGTCTCTGTCTGCCGAT
CGAGTCATGAAATATTCCCTGTGTAATCACCCCGACCTTTTCTCTTGGCG
ATCTATGCGAAATGATTCATCTATGAAGTGATGAAAATAAAGCCGCCCCT
GTGGGTGAAGACTTCTTTGGGGTGTGTTGAACGTTTCTCGCGCACTCCGT
CTTCAGGTACGTTAATAATAGACGGTTGGGGAAGTGAGCAGTCTCACAGG
GGGCCTCATCTGGCTAGAGGGATATCACCTCACCACTCTGTCCATTAATC
TTCGATGTCCCTTCACGAACCCTCCTTCGGTAATATTGAAACCGTTCTTG
GAATCATTCAACTCGTTGTTTGCTTTGAGACTTGTCATGCCGAAATATAT
ATTTTTCTCGTTCACGTCATTCCTACGACGTGTGGTAGTAGGCAACGCTC
TTTCCCGTCCGCCCGTTCGCTGTTTTCAAACCTCGCTAAAAGTCACCTAG
ACCGCGGGATCGAACCCGAGAAGTCACCAATCCGACGGTATTCCAAGTGC
CCAAAAACGCCTCCGCGAAAAAACGAGGGCGGTGGAAGTCGGGGAGAAAC
GACCGCTGCTGTCGACCCCTCACTCTCGGAACGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig70:498787..502021+

>mRNA_F-serratus_M_contig70.18188.1 ID=mRNA_F-serratus_M_contig70.18188.1|Name=mRNA_F-serratus_M_contig70.18188.1|organism=Fucus serratus male|type=CDS|length=3438bp|location=Sequence derived from alignment at F-serratus_M_contig70:498787..502021+ (Fucus serratus male)
GGAGGAGTTACCAGTACCGCCGGGTCGCAGTCCCAAAGGGCAGAAGATAC
TAGTGTCCCGAGAGGTCTGCGAACTCGTGAATCTGGAGCGCCATCGACGC
GTCCAGCTATGACGGCCCCGAATCAGACAACGTTTAAACACGCGGGTCCC
GACCCTTACGAGGTGAAGACTTTCTACGACGTTGGCGTTCGAATGTCATC
GGCTCCAGAAGACATGCTGCAGCACTCGATCTCGCCAGAAGTAGAATCGC
TGTCGATGCCTTCTCCGCTGCCTCAGTCGGTGGTAGCACGCGACTTGGAT
TGGTCAAGGGGATGGTACGACCCCGAGGCGGTATCCGAGACAGGGGACGC
CATCGGAGCAGTCAGTGCTGCTTTCGAGTACCATACTGACGCTGCAAAGA
CAGGGCGACAAGAGGCGTTCGTAACAGCTGTCCCTTCGACCCCTGCGGTA
TCGGGGCAAGACGCAAGCGTTGGAGGGGTTTGTTCATCATCTCCTGTGAC
TGTATGCACCTCGTTTGGGATCGAAGATTCCTACTGTAACGTCAAAGACC
TCGTTGGAGAACAATCCGGGTGCGTTGTTGTGGAACCAGACGCTGATTGT
GTTGCGACACCGGGGGAAGCGTTCTTCGAAGCAGCGCGCCCATCGACCGC
GAACGTACGCAGTTCTACAGGTGTTGCCGAGCGGAGTGTCGGTATCGGCA
CTTCTAACGCTCCGCTAGACACCTTAGATTCATGGAGAGGGTGGGAAGGG
AAAGCAAGCAGTAGCAATGACTCCGGTGGTAGACTGCGCTCAAACCTTTC
TCAGTTTGACGAGAAGCGATGGCCGTCAGTGGTTGTTGGCAACGGAACAG
CCGACATGGAATCGTGCCGACTTCGCGACGGAGCTGGGGCTGGTGGCGGC
GGCAGGAACTCTCTCGATGCCCTAAGGTCCTTCATATCTACTCGTCGTGT
CCACTTGCTCAAGGGAGGAGTTACCAGTACCGCCGGGTCGCAGTCCCAAA
GGGCAGAAGATACTAGTGTCCCGAGAGGTCTGCGAACTCGTGAATCTGGA
GCGCCATCGACGCGTCCAGCTATGACGGCCCCGAATCAGACAACGTTTAA
ACACGCGGGTCCCGACCCTTACGAGGTGAAGACTTTCTACGACGTTGGCG
TTCGAATGTCATCGGCTCCAGAAGACATGCTGCAGCACTCGATCTCGCCA
GAAGTAGAATCGCTGTCGATGCCTTCTCCGCTGCCTCAGTCGGTGGTAGC
ACGCGACTTGGATTGGTCAAGGGGATGGTACGACCCCGAGGCGGTATCCG
AGACAGGGGACGCCATCGGAGCAGTCAGTGCTGCTTTCGAGTACCATACT
GACGCTGCAAAGACAGGGCGACAAGAGGCGTTCGTAACAGCTGTCCCTTC
GACCCCTGCGGTATCGGGGCAAGACGCAAGCGTTGGAGGGGTTTGTTCAT
CATCTCCTGTGACTGTATGCACCTCGTTTGGGATCGAAGATTCCTACTGT
AACGTCAAAGACCTCGTTGGAGAACAATCCGGGTGCGTTGTTGTGGAACC
AGACGCTGATTGTGTTGCGACACCGGGGGAAGCGTTCTTCGAAGCAGCGC
GCCCATCGACCGCGAACGTACGCAGTTCTACAGGTGTTGCCGAGCGGAGT
GTCGGTATCGGCACTTCTAACGCTCCGCTAGACACCTTAGATTCATGGAG
AGGGTGGGAAGGGAAAGCAAGCAGTAGCAATGACTCCGGTGGTAGACTGC
GCTCAAACCTTTCTCAGTTTGACGAGAAGCGATGGCCGTCAGTGGTTGTT
GGCAACGGAACAGCCGACATGGAATCGTGCCGACTTCGCGACGGAGCTGG
GGCTGGTGGCGGCGGCAGGAACTCTCTCGATGCCCTAAGGTCCTTCATAT
CTACTCGTCGTGTCCACTTGCTCAAGGATCATCCCATCGAGCAACGTATA
CAGAAGCACGGAGGTGTCCCCGCCGCCTACCAGCCGCTTACCTTCTCCCA
AGCGTCTAGCCGCCAGGACCGGAAGGATCATCCCATCGAGCAACGTATAC
AGAAGCACGGAGGTGTCCCCGCCGCCTACCAGCCGCTTACCTTCTCCCAA
GCGTCTAGCCGCCAGGACCGGAAGAAAGAAGCGGTTGCCACTTCTTTGCG
CCCGACACCGCTGTGCTGTCATCAAAAACTACCGCCGCTGAGAACGGGGG
AGGTGATCTTAGCGGGCACCACGCTAGCCTCGGTGAAGCAGGCAATCGCG
CGAGCGGGCCGAGAAGCTCGCGCGGCTATTGTGCGAACTTTAGCGGCGAA
CGCTGCGATGGACTTCACTCATCACAGCAATAAGCGATCGCCGCAAAGTG
ACCATCGGGAGGGCTGCAGCGTCCAAACCTGCCGACGCACCGCAGCACTT
ACGAAGGCGACAAAAGAACGCCCAGCCACTGCCGTGGCTAGCGGGAATGG
GGAATTATGCAGTCTAAGAAGTCAAACGCGGCAACAGCGTTGCGCTCGTC
GACCCTCTGGTGGCGATCAGAGGGCAAACTCAGAGGGCGGACGACGGCGT
CCACCGGGGCGGCCGCTGCATGAGCCTCGGGAGCATTTCCATCAGCGCGA
TGGTGATAGTGGTACTCGAGAAAATGCGATAGAACTGGTAAAGAAGCGGT
TGCCACTTCTTTGCGCCCGACACCGCTGTGCTGTCATCAAAAACTACCGC
CGCTGAGAACGGGGGAGGTGATCTTAGCGGGCACCACGCTAGCCTCGGTG
AAGCAGGCAATCGCGCGAGCGGGCCGAGAAGCTCGCGCGGCTATTGTGCG
AACTTTAGCGGCGAACGCTGCGATGGACTTCACTCATCACAGCAATAAGC
GATCGCCGCAAAGTGACCATCGGGAGGGCTGCAGCGTCCAAACCTGCCGA
CGCACCGCAGCACTTACGAAGGCGACAAAAGAACGCCCAGCCACTGCCGT
GGCTAGCGGGAATGGGGAATTATGCAGTCTAAGAAGTCAAACGCGGCAAC
AGCGTTGCGCTCGTCGACCCTCTGGTGGCGATCAGAGGGCAAACTCAGAG
GGCGGACGACGGCGTCCACCGGGGCGGCCGCTGCATGAGCCTCGGGAGCA
TTTCCATCAGCGCGATGGTGATAGTGGTACTCGAGAAAATGCGATAGAAC
TGGTTCACCTAGACCGCGGGATCGAACCCGAGAAGTCACCAATCCGACGG
TATTCCAAGTGCCCAAAAACGCCTCCGCGAAAAAACGAGGGCGGTGGAAG
TCGGGGAGAAACGACCGCTGCTGTCGACCCCTCACTCTCGGAACGGTCAC
CTAGACCGCGGGATCGAACCCGAGAAGTCACCAATCCGACGGTATTCCAA
GTGCCCAAAAACGCCTCCGCGAAAAAACGAGGGCGGTGGAAGTCGGGGAG
AAACGACCGCTGCTGTCGACCCCTCACTCTCGGAACGG
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