mRNA_F-serratus_M_contig70.18187.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig70.18187.1
Unique NamemRNA_F-serratus_M_contig70.18187.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig70.18187.1 vs. uniprot
Match: A0A6H5KBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT9_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.660e-23
Identity = 70/155 (45.16%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:    1 VIDRALAKEAGMAPGLRCMGVMTSGDFFAPDSLMGRG-GRRGSIVQAGTYLIRCSPK-----DSPEGAMCLVLPRKKLNDAIQRD------RLASSALS-HQKNLGVET-------------TQTLESST---LPTVSFGGP-EPSEHYRLSTAG 375
            VIDR+LAKE G+APGLRC+GVMT+GDFFAP+S++GR  GRR  ++ +G+Y +RCSP         EGA C VLPR K+  A+ RD      RL+ S  S H  N  V++             T  +  S+   L  V FGGP EP     LS AG
Sbjct:  351 VIDRSLAKEVGIAPGLRCVGVMTAGDFFAPESMLGRSKGRRPRVLASGSYRVRCSPDIQDGGAGSEGATCFVLPRGKVEAAVHRDHNMKRARLSQSNQSNHNNNSAVDSKGLTMSSIAEHQQTANISGSSKVELARVCFGGPGEPPRLAYLSLAG 505
[Close]
BLAST of mRNA_F-serratus_M_contig70.18187.1 vs. uniprot
Match: D8LJJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ6_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 6.840e-22
Identity = 61/143 (42.66%), Postives = 82/143 (57.34%), Query Frame = 1 
Query:    1 VIDRALAKEAGMAPGLRCMGVMTSGDFFAPDSLMGRG-GRRGSIVQAGTYLIRCSPK-----DSPEGAMCLVLPRKKLNDAIQRDR-------LASSALSHQKNLGVET-------------TQTLESST----LPTVSFGGP 339
            VIDR+LAKE G+APGLRC+GVMT+GDFFAP+S++GR  GRR  ++ +G+Y +RCSP         +GA C VLPR K+  A+ RD          S+  +H  N  V++             T  +  S+    L  VSFGGP
Sbjct:  429 VIDRSLAKEVGIAPGLRCVGVMTAGDFFAPESMLGRSKGRRPRVLASGSYRVRCSPDVQDGGAGSDGATCFVLPRGKVEAAVHRDHHLKRSRLFQSNQSNHNNNSAVDSKGLTMSPIAGHRQTANISGSSSNDELARVSFGGP 571
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBT9_9PHAE5.660e-2345.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJJ6_ECTSI6.840e-2242.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig70contigF-serratus_M_contig70:498102..498782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932154.3031511-CDS-F-serratus_M_contig70:498101..4982561622932154.3031511-CDS-F-serratus_M_contig70:498101..498256Fucus serratus maleCDSF-serratus_M_contig70 498102..498256 +
1690964173.480672-CDS-F-serratus_M_contig70:498101..4982561690964173.480672-CDS-F-serratus_M_contig70:498101..498256Fucus serratus maleCDSF-serratus_M_contig70 498102..498256 +
1622932154.3206131-CDS-F-serratus_M_contig70:498536..4987801622932154.3206131-CDS-F-serratus_M_contig70:498536..498780Fucus serratus maleCDSF-serratus_M_contig70 498537..498780 +
1690964173.49856-CDS-F-serratus_M_contig70:498536..4987801690964173.49856-CDS-F-serratus_M_contig70:498536..498780Fucus serratus maleCDSF-serratus_M_contig70 498537..498780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig70.18187.1prot_F-serratus_M_contig70.18187.1Fucus serratus malepolypeptideF-serratus_M_contig70 498102..498780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig70.18187.1

>prot_F-serratus_M_contig70.18187.1 ID=prot_F-serratus_M_contig70.18187.1|Name=mRNA_F-serratus_M_contig70.18187.1|organism=Fucus serratus male|type=polypeptide|length=133bp
VIDRALAKEAGMAPGLRCMGVMTSGDFFAPDSLMGRGGRRGSIVQAGTYL
IRCSPKDSPEGAMCLVLPRKKLNDAIQRDRLASSALSHQKNLGVETTQTL
ESSTLPTVSFGGPEPSEHYRLSTAGNAAKSWEK
back to top

mRNA from alignment at F-serratus_M_contig70:498102..498782+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig70.18187.1 ID=mRNA_F-serratus_M_contig70.18187.1|Name=mRNA_F-serratus_M_contig70.18187.1|organism=Fucus serratus male|type=mRNA|length=681bp|location=Sequence derived from alignment at F-serratus_M_contig70:498102..498782+ (Fucus serratus male)
GTGATAGATCGAGCGTTGGCTAAGGAGGCGGGCATGGCTCCGGGGTTACG
CTGCATGGGTGTGATGACGTCGGGAGACTTTTTTGCGCCGGACTCATTGA
TGGGCCGCGGCGGCCGTCGGGGGTCTATCGTGCAAGCCGGGACCTACCTC
ATCAGGTTGGAATGTCACGCACGAAGTTTTTCAACCAGTGTTCGAACTTC
ATTCGTTTTGTACCCCATTTCTAGGAGCACTAACCGCACCCTAGTGCCCG
ATTCTGTGTTGCCTTTCCCCCAAGAATCACCTCGTTGCACCCAATTGAGT
CATCAATTCCAGGTGAAAACCTGTGAGTTTACCAGTAAGCGACTTCTCCC
GAAACAGCGTTTCACTCGTGACTACTCGTACGATCAGGTCTCATTCCTCT
GCTCCGGCCCTAAACTTTGATGTTGTAATTCGTAGATGTTCTCCGAAAGA
CTCTCCTGAAGGAGCGATGTGTCTGGTTCTTCCGCGCAAAAAGCTGAACG
ACGCCATTCAGCGTGATCGATTAGCGAGTAGCGCTCTATCCCATCAGAAA
AACCTCGGGGTTGAAACCACTCAGACGCTAGAGTCTTCTACTCTTCCCAC
GGTAAGCTTCGGTGGTCCCGAGCCATCCGAACACTACCGCCTTTCTACAG
CAGGGAATGCCGCCAAGAGCTGGGAAAAGGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig70:498102..498782+

>mRNA_F-serratus_M_contig70.18187.1 ID=mRNA_F-serratus_M_contig70.18187.1|Name=mRNA_F-serratus_M_contig70.18187.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig70:498102..498782+ (Fucus serratus male)
GTGATAGATCGAGCGTTGGCTAAGGAGGCGGGCATGGCTCCGGGGTTACG
CTGCATGGGTGTGATGACGTCGGGAGACTTTTTTGCGCCGGACTCATTGA
TGGGCCGCGGCGGCCGTCGGGGGTCTATCGTGCAAGCCGGGACCTACCTC
ATCAGGTGATAGATCGAGCGTTGGCTAAGGAGGCGGGCATGGCTCCGGGG
TTACGCTGCATGGGTGTGATGACGTCGGGAGACTTTTTTGCGCCGGACTC
ATTGATGGGCCGCGGCGGCCGTCGGGGGTCTATCGTGCAAGCCGGGACCT
ACCTCATCAGATGTTCTCCGAAAGACTCTCCTGAAGGAGCGATGTGTCTG
GTTCTTCCGCGCAAAAAGCTGAACGACGCCATTCAGCGTGATCGATTAGC
GAGTAGCGCTCTATCCCATCAGAAAAACCTCGGGGTTGAAACCACTCAGA
CGCTAGAGTCTTCTACTCTTCCCACGGTAAGCTTCGGTGGTCCCGAGCCA
TCCGAACACTACCGCCTTTCTACAGCAGGGAATGCCGCCAAGAGCTGGGA
AAAGATGTTCTCCGAAAGACTCTCCTGAAGGAGCGATGTGTCTGGTTCTT
CCGCGCAAAAAGCTGAACGACGCCATTCAGCGTGATCGATTAGCGAGTAG
CGCTCTATCCCATCAGAAAAACCTCGGGGTTGAAACCACTCAGACGCTAG
AGTCTTCTACTCTTCCCACGGTAAGCTTCGGTGGTCCCGAGCCATCCGAA
CACTACCGCCTTTCTACAGCAGGGAATGCCGCCAAGAGCTGGGAAAAG
back to top