mRNA_F-serratus_M_contig70.18177.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig70.18177.1
Unique NamemRNA_F-serratus_M_contig70.18177.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig70.18177.1 vs. uniprot
Match: D7FZQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ3_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.980e-40
Identity = 78/125 (62.40%), Postives = 91/125 (72.80%), Query Frame = 3 
Query:  540 RHAMKRRSQSLGGQSRKAPLDAAGSVRALGALPPPPPQ-TLNLYHVSRPEPRARWVFNLSKHSNVVDKGPPPDIVTSTIDIRRPNLGGLVWINATLGG-HCCLQKGTKSRTVTPVPTNVVDGWLN 908
            R A+++RSQS+G    K  L   G+       P  P Q  L LYHVSRPEPRARWVFNLSKH+NV D GPPP+ +TSTID +RPNLGGLVW+NA  G  HCCLQKG K++ VTPVP NV+DGWLN
Sbjct:   44 RRALRKRSQSVGD---KMALVGPGAPSPTTFSPQAPVQPNLLLYHVSRPEPRARWVFNLSKHTNVTDSGPPPETITSTIDKKRPNLGGLVWVNAVAGSLHCCLQKGVKNKAVTPVPANVLDGWLN 165
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BLAST of mRNA_F-serratus_M_contig70.18177.1 vs. uniprot
Match: A0A6H5KYF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF6_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 4.780e-39
Identity = 75/124 (60.48%), Postives = 89/124 (71.77%), Query Frame = 3 
Query:  540 RHAMKRRSQSLGGQSRKAPLDAAGSVRALGALPPPPPQTLNLYHVSRPEPRARWVFNLSKHSNVVDKGPPPDIVTSTIDIRRPNLGGLVWINATLGG-HCCLQKGTKSRTVTPVPTNVVDGWLN 908
            R ++++RSQS+G    K  L   G+       P P    L LYHVSRPEPRARWVFNLSK +NV D GPPP+ +TSTID +RPNLGGLVW+NA  G  HCCLQKG K++ VTPVP NV+DGWLN
Sbjct:  224 RRSLRKRSQSVGD---KMVLVGPGAPSPPFNPPAPAQPNLLLYHVSRPEPRARWVFNLSKPTNVTDSGPPPETITSTIDKKRPNLGGLVWVNAVAGSLHCCLQKGVKNKAVTPVPANVLDGWLN 344
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZQ3_ECTSI1.980e-4062.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYF6_9PHAE4.780e-3960.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig70contigF-serratus_M_contig70:296187..297094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size910
Cds size789
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932149.5940237-UTR-F-serratus_M_contig70:296186..2963051622932149.5940237-UTR-F-serratus_M_contig70:296186..296305Fucus serratus maleUTRF-serratus_M_contig70 296187..296305 +
1690964171.896148-UTR-F-serratus_M_contig70:296186..2963051690964171.896148-UTR-F-serratus_M_contig70:296186..296305Fucus serratus maleUTRF-serratus_M_contig70 296187..296305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932149.6237829-CDS-F-serratus_M_contig70:296305..2970941622932149.6237829-CDS-F-serratus_M_contig70:296305..297094Fucus serratus maleCDSF-serratus_M_contig70 296306..297094 +
1690964171.9102361-CDS-F-serratus_M_contig70:296305..2970941690964171.9102361-CDS-F-serratus_M_contig70:296305..297094Fucus serratus maleCDSF-serratus_M_contig70 296306..297094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig70.18177.1prot_F-serratus_M_contig70.18177.1Fucus serratus malepolypeptideF-serratus_M_contig70 296306..297094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig70.18177.1

>prot_F-serratus_M_contig70.18177.1 ID=prot_F-serratus_M_contig70.18177.1|Name=mRNA_F-serratus_M_contig70.18177.1|organism=Fucus serratus male|type=polypeptide|length=263bp
MQAHASHPLVLYDQQDSDSPPSLPPRQRSFGAMASGSLGGGIGAGNIGGI
PPQLASPADLIEIMSRTSPRDKVPHRRPGSRGNSLVADRGRKKHLDEDYR
SGENVGGRRRRPERPRSVGGPQYDQHQPMSNRHKDEEQHQRHAMKRRSQS
LGGQSRKAPLDAAGSVRALGALPPPPPQTLNLYHVSRPEPRARWVFNLSK
HSNVVDKGPPPDIVTSTIDIRRPNLGGLVWINATLGGHCCLQKGTKSRTV
TPVPTNVVDGWLN
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mRNA from alignment at F-serratus_M_contig70:296187..297094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig70.18177.1 ID=mRNA_F-serratus_M_contig70.18177.1|Name=mRNA_F-serratus_M_contig70.18177.1|organism=Fucus serratus male|type=mRNA|length=908bp|location=Sequence derived from alignment at F-serratus_M_contig70:296187..297094+ (Fucus serratus male)
GTACAAACAAGTTGACGCCCACCGACAAGCAAGGTGAGGTGTGAGGTTTG
CCCGCCTTCTGTCATTTTTTCTCGACACCCACCCTCAGAGGCATCCATCT
ATCAGCCACACCGGGAGCCATGCAAGCGCACGCGTCACACCCCCTCGTGC
TGTACGATCAACAAGACTCAGACAGTCCACCGAGTCTCCCCCCCCGTCAA
AGGTCTTTCGGAGCGATGGCGTCTGGATCCCTTGGAGGAGGGATCGGGGC
TGGCAACATCGGCGGCATCCCGCCGCAACTCGCATCTCCTGCAGACCTAA
TCGAGATAATGAGTCGAACCAGCCCTCGAGACAAGGTTCCACACCGGCGG
CCGGGCTCCAGGGGTAACAGTCTGGTGGCGGACCGAGGCAGAAAGAAGCA
CCTGGACGAAGACTATCGCTCCGGCGAAAACGTGGGCGGAAGACGCAGGA
GGCCAGAACGCCCTCGCAGCGTAGGGGGGCCGCAATATGACCAACACCAA
CCGATGAGCAACCGTCACAAGGACGAAGAACAACATCAAAGGCACGCGAT
GAAGCGGCGGTCGCAGAGCCTGGGGGGGCAAAGCAGGAAGGCCCCTTTGG
ATGCAGCGGGCTCCGTGCGCGCTCTCGGCGCCTTGCCGCCGCCACCGCCA
CAGACACTGAACCTGTACCACGTCTCGAGACCAGAGCCTCGAGCGAGGTG
GGTGTTCAACCTTTCCAAGCATTCGAACGTCGTGGACAAAGGCCCTCCCC
CTGATATTGTGACATCAACAATCGACATCAGGAGACCCAACCTGGGAGGG
CTTGTGTGGATCAACGCTACTCTCGGAGGACACTGTTGCCTCCAAAAGGG
CACCAAGTCGAGGACGGTGACTCCCGTACCAACCAACGTAGTAGACGGGT
GGCTAAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig70:296187..297094+

>mRNA_F-serratus_M_contig70.18177.1 ID=mRNA_F-serratus_M_contig70.18177.1|Name=mRNA_F-serratus_M_contig70.18177.1|organism=Fucus serratus male|type=CDS|length=1578bp|location=Sequence derived from alignment at F-serratus_M_contig70:296187..297094+ (Fucus serratus male)
ATGCAAGCGCACGCGTCACACCCCCTCGTGCTGTACGATCAACAAGACTC
AGACAGTCCACCGAGTCTCCCCCCCCGTCAAAGGTCTTTCGGAGCGATGG
CGTCTGGATCCCTTGGAGGAGGGATCGGGGCTGGCAACATCGGCGGCATC
CCGCCGCAACTCGCATCTCCTGCAGACCTAATCGAGATAATGAGTCGAAC
CAGCCCTCGAGACAAGGTTCCACACCGGCGGCCGGGCTCCAGGGGTAACA
GTCTGGTGGCGGACCGAGGCAGAAAGAAGCACCTGGACGAAGACTATCGC
TCCGGCGAAAACGTGGGCGGAAGACGCAGGAGGCCAGAACGCCCTCGCAG
CGTAGGGGGGCCGCAATATGACCAACACCAACCGATGAGCAACCGTCACA
AGGACGAAGAACAACATCAAAGGCACGCGATGAAGCGGCGGTCGCAGAGC
CTGGGGGGGCAAAGCAGGAAGGCCCCTTTGGATGCAGCGGGCTCCGTGCG
CGCTCTCGGCGCCTTGCCGCCGCCACCGCCACAGACACTGAACCTGTACC
ACGTCTCGAGACCAGAGCCTCGAGCGAGGTGGGTGTTCAACCTTTCCAAG
CATTCGAACGTCGTGGACAAAGGCCCTCCCCCTGATATTGTGACATCAAC
AATCGACATCAGGAGACCCAACCTGGGAGGGCTTGTGTGGATCAACGCTA
CTCTCGGAGGACACTGTTGCCTCCAAAAGGGCACCAAGTCGAGGACGGTG
ACTCCCGTACCAACCAACGTAGTAGACGGGTGGCTAAACATGCAAGCGCA
CGCGTCACACCCCCTCGTGCTGTACGATCAACAAGACTCAGACAGTCCAC
CGAGTCTCCCCCCCCGTCAAAGGTCTTTCGGAGCGATGGCGTCTGGATCC
CTTGGAGGAGGGATCGGGGCTGGCAACATCGGCGGCATCCCGCCGCAACT
CGCATCTCCTGCAGACCTAATCGAGATAATGAGTCGAACCAGCCCTCGAG
ACAAGGTTCCACACCGGCGGCCGGGCTCCAGGGGTAACAGTCTGGTGGCG
GACCGAGGCAGAAAGAAGCACCTGGACGAAGACTATCGCTCCGGCGAAAA
CGTGGGCGGAAGACGCAGGAGGCCAGAACGCCCTCGCAGCGTAGGGGGGC
CGCAATATGACCAACACCAACCGATGAGCAACCGTCACAAGGACGAAGAA
CAACATCAAAGGCACGCGATGAAGCGGCGGTCGCAGAGCCTGGGGGGGCA
AAGCAGGAAGGCCCCTTTGGATGCAGCGGGCTCCGTGCGCGCTCTCGGCG
CCTTGCCGCCGCCACCGCCACAGACACTGAACCTGTACCACGTCTCGAGA
CCAGAGCCTCGAGCGAGGTGGGTGTTCAACCTTTCCAAGCATTCGAACGT
CGTGGACAAAGGCCCTCCCCCTGATATTGTGACATCAACAATCGACATCA
GGAGACCCAACCTGGGAGGGCTTGTGTGGATCAACGCTACTCTCGGAGGA
CACTGTTGCCTCCAAAAGGGCACCAAGTCGAGGACGGTGACTCCCGTACC
AACCAACGTAGTAGACGGGTGGCTAAAC
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