mRNA_F-serratus_M_contig7.18151.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7.18151.1
Unique NamemRNA_F-serratus_M_contig7.18151.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7.18151.1 vs. uniprot
Match: D7FLD8_ECTSI (Mitochondrial import inner membrane translocase TIM14 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLD8_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 2.560e-41
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 1
Query:    1 GLFGAFGKRYYEGGFDEKMTRKEAALILGVRESAAAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGRE 228
            G FGAFGKR+Y+GGF+EKMTRKEAALILGVRESA AQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGR+
Sbjct:  134 GFFGAFGKRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGRK 209          
BLAST of mRNA_F-serratus_M_contig7.18151.1 vs. uniprot
Match: K8Z3F4_NANGC (Chaperone-domain containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3F4_NANGC)

HSP 1 Score: 118 bits (296), Expect = 1.450e-31
Identity = 55/70 (78.57%), Postives = 66/70 (94.29%), Query Frame = 1
Query:   16 FGKRYYEGGFDEKMTRKEAALILGVRESAAAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGR 225
            F KR+YEGGF++KMTR+EAALILGVRESA+ QRIK++HRRILM+NHPD GGS Y+A+KINEAKE+LLKGR
Sbjct:  160 FAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGR 229          
BLAST of mRNA_F-serratus_M_contig7.18151.1 vs. uniprot
Match: A0A835YPD5_9STRA (Mitochondrial import inner membrane translocase TIM14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPD5_9STRA)

HSP 1 Score: 117 bits (292), Expect = 7.220e-31
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 1
Query:   22 KRYYEGGFDEKMTRKEAALILGVRESAAAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGRE 228
            KR+Y+GGF+E MTR+EAALILGVRESA+ QRIKD+HRRILM+NHPD+GGS YMA KIN AKEILLKG+E
Sbjct:  171 KRFYDGGFEETMTRREAALILGVRESASPQRIKDAHRRILMLNHPDRGGSTYMAGKINAAKEILLKGKE 239          
BLAST of mRNA_F-serratus_M_contig7.18151.1 vs. uniprot
Match: A0A7S2JUU2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUU2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.340e-30
Identity = 53/70 (75.71%), Postives = 65/70 (92.86%), Query Frame = 1
Query:   19 GKRYYEGGFDEKMTRKEAALILGVRESAAAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGRE 228
            G +YYEGGF++KMTR+EAALILGVRESA  +RIKD+HR+IL++NHPD GGS YMA+KINEAKE+LLKG+E
Sbjct:  167 GSKYYEGGFEDKMTRREAALILGVRESATVKRIKDAHRKILILNHPDTGGSTYMASKINEAKELLLKGKE 236          
BLAST of mRNA_F-serratus_M_contig7.18151.1 vs. uniprot
Match: A0A7S2Q5G3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q5G3_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.160e-29
Identity = 51/70 (72.86%), Postives = 65/70 (92.86%), Query Frame = 1
Query:   19 GKRYYEGGFDEKMTRKEAALILGVRESAAAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGRE 228
            G +YYEGGF+E+MTRKEAALILGVRES+ A+RIK++HR++L++NHPD GGS YMA KINEAKE+LLKG++
Sbjct:  199 GAKYYEGGFEEQMTRKEAALILGVRESSTAKRIKEAHRKLLILNHPDTGGSTYMAGKINEAKELLLKGKK 268          
BLAST of mRNA_F-serratus_M_contig7.18151.1 vs. uniprot
Match: A0A7S3DS72_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DS72_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.210e-28
Identity = 49/69 (71.01%), Postives = 62/69 (89.86%), Query Frame = 1
Query:   19 GKRYYEGGFDEKMTRKEAALILGVRESAAAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGR 225
            G +YYEGGF++ MTR+EAALILGVRES+ A RIKD+HR++L++NHPD GGS YMA KINEAKE+L+KG+
Sbjct:  126 GSKYYEGGFEDSMTRREAALILGVRESSPASRIKDAHRKLLILNHPDTGGSTYMAGKINEAKELLMKGK 194          
BLAST of mRNA_F-serratus_M_contig7.18151.1 vs. uniprot
Match: A0A482S026_9ARCH (J domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S026_9ARCH)

HSP 1 Score: 109 bits (273), Expect = 1.760e-28
Identity = 47/71 (66.20%), Postives = 66/71 (92.96%), Query Frame = 1
Query:   16 FGKRYYEGGFDEKMTRKEAALILGVRESAAAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGRE 228
            F + +Y+GGF+EKMT++EAALILGVRESAA +R+K++HRR+L++NHPDKGGS ++ AKINEAK++LLKG++
Sbjct:  125 FARNFYDGGFEEKMTKREAALILGVRESAAVERVKEAHRRMLILNHPDKGGSVFITAKINEAKDLLLKGKQ 195          
BLAST of mRNA_F-serratus_M_contig7.18151.1 vs. uniprot
Match: A8J0E8_CHLRE (Presequence translocase-associated protein import motor subunit n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8J0E8_CHLRE)

HSP 1 Score: 106 bits (265), Expect = 3.120e-28
Identity = 47/72 (65.28%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 GLFGAFGKRYYEGGFDEKMTRKEAALILGVRESAAAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILL 216
            GLF + G++YY+GGF  +MTR+EAALILG+RESA  +R+KD+HRRI++ NHPD GGS Y+AAK+NEAK++LL
Sbjct:   33 GLFNSVGRQYYKGGFLPEMTRREAALILGIRESAGEERVKDAHRRIMVANHPDSGGSSYVAAKVNEAKDLLL 104          
BLAST of mRNA_F-serratus_M_contig7.18151.1 vs. uniprot
Match: F0YBX3_AURAN (J domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBX3_AURAN)

HSP 1 Score: 104 bits (260), Expect = 4.520e-28
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 1
Query:   22 KRYYEGGFDEKMTRKEAALILGVRESAAAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILL 216
            KRYYEG F+  MTR+EAALILGVRESA AQRIKD+HRRIL INHPD GGS +++AK+NEAKE+L+
Sbjct:    1 KRYYEGPFEAAMTRREAALILGVRESATAQRIKDAHRRILRINHPDMGGSAFLSAKVNEAKELLI 65          
BLAST of mRNA_F-serratus_M_contig7.18151.1 vs. uniprot
Match: A0A7S3LBB7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBB7_9STRA)

HSP 1 Score: 108 bits (271), Expect = 7.530e-28
Identity = 48/69 (69.57%), Postives = 63/69 (91.30%), Query Frame = 1
Query:   19 GKRYYEGGFDEKMTRKEAALILGVRESAAAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGR 225
            G +YYEGGF+E+MTR+EAALILGVRES++  RIKD+HR++L++NHPD GGS Y+A K+NEAKE+LLKG+
Sbjct:  156 GAKYYEGGFEEQMTRREAALILGVRESSSTSRIKDAHRKLLILNHPDTGGSTYIAGKLNEAKELLLKGK 224          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7.18151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLD8_ECTSI2.560e-4192.11Mitochondrial import inner membrane translocase TI... [more]
K8Z3F4_NANGC1.450e-3178.57Chaperone-domain containing protein n=1 Tax=Nannoc... [more]
A0A835YPD5_9STRA7.220e-3179.71Mitochondrial import inner membrane translocase TI... [more]
A0A7S2JUU2_9STRA1.340e-3075.71Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2Q5G3_9STRA6.160e-2972.86Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3DS72_9STRA1.210e-2871.01Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A482S026_9ARCH1.760e-2866.20J domain-containing protein n=1 Tax=archaeon TaxID... [more]
A8J0E8_CHLRE3.120e-2865.28Presequence translocase-associated protein import ... [more]
F0YBX3_AURAN4.520e-2875.38J domain-containing protein (Fragment) n=1 Tax=Aur... [more]
A0A7S3LBB7_9STRA7.530e-2869.57Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7contigF-serratus_M_contig7:1261495..1261986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue6.2e-32
Seed eggNOG ortholog2880.D7FLD8
Preferred nameMDJ2
KEGG koko:K09535,ko:K09539
Hectar predicted targeting categoryother localisation
GOsGO:0001405,GO:0001671,GO:0002082,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0006140,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007154,GO:0008047,GO:0008104,GO:0008150,GO:0009267,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010563,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019866,GO:0030150,GO:0030234,GO:0031090,GO:0031323,GO:0031324,GO:0031333,GO:0031667,GO:0031668,GO:0031669,GO:0031966,GO:0031967,GO:0031975,GO:0032781,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0042325,GO:0042326,GO:0042594,GO:0042886,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043457,GO:0043462,GO:0043467,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0045934,GO:0045936,GO:0045980,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0060589,GO:0060590,GO:0062012,GO:0062014,GO:0065002,GO:0065007,GO:0065009,GO:0070585,GO:0070727,GO:0071496,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:0090324,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:1900542,GO:1900543,GO:1901856,GO:1902956,GO:1902957,GO:1903578,GO:1903579,GO:1905446,GO:1905447,GO:1990542
EggNOG free text desc.protein transport
EggNOG OGsCOG2214@1,KOG0723@2759
Ec32 ortholog descriptionMitochondrial import inner membrane translocase TIM14 homolog
Ec32 orthologEc-12_007780.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932145.123953-CDS-F-serratus_M_contig7:1261494..12616141622932145.123953-CDS-F-serratus_M_contig7:1261494..1261614Fucus serratus maleCDSF-serratus_M_contig7 1261495..1261614 +
1690964169.7218258-CDS-F-serratus_M_contig7:1261494..12616141690964169.7218258-CDS-F-serratus_M_contig7:1261494..1261614Fucus serratus maleCDSF-serratus_M_contig7 1261495..1261614 +
1622932145.1563454-CDS-F-serratus_M_contig7:1261875..12619861622932145.1563454-CDS-F-serratus_M_contig7:1261875..1261986Fucus serratus maleCDSF-serratus_M_contig7 1261876..1261986 +
1690964169.734767-CDS-F-serratus_M_contig7:1261875..12619861690964169.734767-CDS-F-serratus_M_contig7:1261875..1261986Fucus serratus maleCDSF-serratus_M_contig7 1261876..1261986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7.18151.1prot_F-serratus_M_contig7.18151.1Fucus serratus malepolypeptideF-serratus_M_contig7 1261495..1261986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7.18151.1

>prot_F-serratus_M_contig7.18151.1 ID=prot_F-serratus_M_contig7.18151.1|Name=mRNA_F-serratus_M_contig7.18151.1|organism=Fucus serratus male|type=polypeptide|length=77bp
GLFGAFGKRYYEGGFDEKMTRKEAALILGVRESAAAQRIKDSHRRILMIN
HPDKGGSKYMAAKINEAKEILLKGRE*
back to top

mRNA from alignment at F-serratus_M_contig7:1261495..1261986+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7.18151.1 ID=mRNA_F-serratus_M_contig7.18151.1|Name=mRNA_F-serratus_M_contig7.18151.1|organism=Fucus serratus male|type=mRNA|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig7:1261495..1261986+ (Fucus serratus male)
GGACTGTTTGGAGCATTCGGGAAACGCTACTACGAGGGAGGCTTCGACGA GAAGATGACTAGAAAGGAGGCGGCTTTGATACTTGGGGTTAGAGAAAGCG CGGCCGCTCAGAGGATTAAGGTACGCAGGTGTCGGCTGTCCATTGCTAGT GATTTGCTGAAACCTATAAAGAAAGGTCAGTGGACTCTCAAGTTCAAGTT ACACAAGATTTACTTCGGCTATGTAAGGGTGTTTTTCACGACCGAGATTT TTTTGTGTGTGGGGGTGTTTTCTGGTTACACAGCTCTGTACCCCAAAATA CCATATCGTCGCCCGCTACCATTCCTCCTGATCGTTTGTCTTTCGTCCAT CCTCATACACTGACCTCACCACATCCCGCAGGACTCCCACAGAAGGATTC TGATGATCAATCACCCGGACAAGGGCGGATCTAAGTACATGGCGGCTAAG ATAAACGAAGCAAAGGAGATACTTCTTAAAGGGAGAGAGTAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig7:1261495..1261986+

>mRNA_F-serratus_M_contig7.18151.1 ID=mRNA_F-serratus_M_contig7.18151.1|Name=mRNA_F-serratus_M_contig7.18151.1|organism=Fucus serratus male|type=CDS|length=462bp|location=Sequence derived from alignment at F-serratus_M_contig7:1261495..1261986+ (Fucus serratus male)
GGACTGTTTGGAGCATTCGGGAAACGCTACTACGAGGGAGGCTTCGACGA
GAAGATGACTAGAAAGGAGGCGGCTTTGATACTTGGGGTTAGAGAAAGCG
CGGCCGCTCAGAGGATTAAGGGACTGTTTGGAGCATTCGGGAAACGCTAC
TACGAGGGAGGCTTCGACGAGAAGATGACTAGAAAGGAGGCGGCTTTGAT
ACTTGGGGTTAGAGAAAGCGCGGCCGCTCAGAGGATTAAGGACTCCCACA
GAAGGATTCTGATGATCAATCACCCGGACAAGGGCGGATCTAAGTACATG
GCGGCTAAGATAAACGAAGCAAAGGAGATACTTCTTAAAGGGAGAGAGTA
AGACTCCCACAGAAGGATTCTGATGATCAATCACCCGGACAAGGGCGGAT
CTAAGTACATGGCGGCTAAGATAAACGAAGCAAAGGAGATACTTCTTAAA
GGGAGAGAGTAA
back to top