mRNA_F-serratus_M_contig7.18140.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7.18140.1
Unique NamemRNA_F-serratus_M_contig7.18140.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7.18140.1 vs. uniprot
Match: A0A6H5JLI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI6_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 7.140e-54
Identity = 199/599 (33.22%), Postives = 260/599 (43.41%), Query Frame = 1 
Query:  103 IMLHR-ECEVRVLQAR----LARKRSGNENATIRRNGNRGLSLSVLVSYDGTHAATEVCRDKESPSWQRLAIFQINLDERFEGARKALEERLGGGNANAAPRKATADDGRGAA-------------------------------------------NVAPPVNPRGQSLNPFA-------------ENFVPPPSRTXXXXXXXXXXXXXXXXXTQAR----LRTSLIVYLRVLNDNLMSKELVGEIAVDLMTLLRSEGDQLATDRLGHVGKNPPQPLTD-------------QEILAVDTWVALRERNGELRVQIIV---RRGSSDGIIDARRQISIDLGRPKEAETAPGASVGIKSPEDGICLESQADTCRCAWPEFEKMLRDGLVKTSVGTGQRSLDECLLEIQEQYDFSVADGYRQGRPEE---VGDHLAGRQGGNQRDDRTPDWPKRNQDVAWLRSCMQLAALRHRSQCIAWAEKLQSSPSLQHALRSPSAFGVLRTKREDARRTRTQRSNAAGLNQLAGG---GLADLVAGGIPTALQ---HRPAAMFPNRMEDEDMGIAF------------EGTDEELGGLGDVTTAIPRVE 1593
            ++LHR +CEVRV QAR      RKR+G++   +        ++  L+S DG H  TE CR+ E PSW+R+A+F +NL    EG             A  AP K   D    A                                                       SLNPFA              NFVPP +                     A     LR S++++LRVL+  L SKE++G++AVDL+ LLRS GD+LATDRL  + +    PL                 ++AVDTWV+LR+   ELRVQI++   R  +S  +   R Q+  D     EA  A                             F+ +  DGLVKTS+   QRSLDE LLE+QE YDFS   GYR+G+P+E     D   G++G    D +TP+WP    + A LR  MQLAALR R Q IAWAEKL SS  L+ ALR P +F   R+ +  A   +  ++ A      A      L +LVA GIP AL+   H P+A                           EG +EE G L  V TAIPRVE
Sbjct:    1 MLLHRRQCEVRVCQARHLVPKGRKRNGDDKPAVLV----ADAVWALMSIDGVHNTTESCRNIEHPSWERVAVFDLNLCRAAEGI------------ARGAPVKPPRDSNPTAGAXXXXXXXXXXXXXXXXXFERPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLNPFAVAEAETQXXXXFASNFVPPAATPLSSPPPQAASPRSKSSCPPAAAAWVLRASMVLHLRVLHGRLRSKEVLGDVAVDLVPLLRSGGDRLATDRLEWLEEEDGAPLLPLGNGDAGVITTHPPPVVAVDTWVSLRQGTAELRVQILMKTPREPASSNVGSQRAQVGGD-----EAWAAA----------------------------FDALSADGLVKTSLDLEQRSLDERLLEVQETYDFSAGSGYREGKPDEDEGARDLDQGKEG----DPKTPEWPACESEAARLRRDMQLAALRDRRQSIAWAEKLGSSADLREALRRPPSFSA-RSSQGPAAGGKRAKATAVPTPFAASPVFRDLKELVAQGIPPALRSANHPPSAGATGARSSXXXXXXXXXXXXXXXXXXXEG-EEEAGFLDGVVTAIPRVE 544
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BLAST of mRNA_F-serratus_M_contig7.18140.1 vs. uniprot
Match: A0A836CAD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.680e-7
Identity = 68/251 (27.09%), Postives = 100/251 (39.84%), Query Frame = 1 
Query:  211 SLSVLVSYDGTHAATEVCRDKESPSWQRLAIFQINLDERFEGARKALEERLGGGNANAAPRKATADDGRGAANVAPPVNPRGQSLNPFAENFVP-PPSRTXXXXXXXXXXXXXXXXXTQARLRTSLIVYLRVLNDNLMSKELVGEIAVDLMTLLRSEGDQLATDRLGH--------------------------VGKNPPQPLT--------------------DQEILAVDTWVALRERNGELRVQIIVR 822
            +L V ++    H  TE C D + P W ++A F  +       A  A  E       +AA  + T D  R     +    P  Q L     +  P PP+                     A  R   + +LRV +D+L+SK+L+GE+ VD+  L+ + G  L TDR+G+                          +  +P  P +                    D E LAVDTWVALR+ +GELRVQ++VR
Sbjct:   59 TLCVSITLGDKHVLTEQCADLQRPVWDKVASFTYDPCPPPADAAAAPHEV----EPSAAAVEMT-DMFRAMGLPSRAAEPHDQQLPLEPHSGKPSPPAAAAGLQQLSASATAGAAPTADAHARRRAL-HLRVFSDSLVSKDLLGEVTVDVAALVATGGALLVTDRIGYTDSGGAGSRGEEDDGDSSGAFMVPLALAASPTPPRSHHSERVSANGAAAAAVASAVDFEPLAVDTWVALRQGDGELRVQVLVR 303
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7.18140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLI6_9PHAE7.140e-5433.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAD2_9STRA1.680e-727.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7contigF-serratus_M_contig7:1118616..1120903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1595
Cds size1488
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7.18140.1prot_F-serratus_M_contig7.18140.1Fucus serratus malepolypeptideF-serratus_M_contig7 1118721..1120903 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932142.5759778-UTR-F-serratus_M_contig7:1118615..11187201622932142.5759778-UTR-F-serratus_M_contig7:1118615..1118720Fucus serratus maleUTRF-serratus_M_contig7 1118616..1118720 +
1690964168.510305-UTR-F-serratus_M_contig7:1118615..11187201690964168.510305-UTR-F-serratus_M_contig7:1118615..1118720Fucus serratus maleUTRF-serratus_M_contig7 1118616..1118720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932142.5980852-CDS-F-serratus_M_contig7:1118720..11187791622932142.5980852-CDS-F-serratus_M_contig7:1118720..1118779Fucus serratus maleCDSF-serratus_M_contig7 1118721..1118779 +
1690964168.5279074-CDS-F-serratus_M_contig7:1118720..11187791690964168.5279074-CDS-F-serratus_M_contig7:1118720..1118779Fucus serratus maleCDSF-serratus_M_contig7 1118721..1118779 +
1622932142.6202383-CDS-F-serratus_M_contig7:1119007..11201161622932142.6202383-CDS-F-serratus_M_contig7:1119007..1120116Fucus serratus maleCDSF-serratus_M_contig7 1119008..1120116 +
1690964168.5421383-CDS-F-serratus_M_contig7:1119007..11201161690964168.5421383-CDS-F-serratus_M_contig7:1119007..1120116Fucus serratus maleCDSF-serratus_M_contig7 1119008..1120116 +
1622932142.6369805-CDS-F-serratus_M_contig7:1120583..11209031622932142.6369805-CDS-F-serratus_M_contig7:1120583..1120903Fucus serratus maleCDSF-serratus_M_contig7 1120584..1120903 +
1690964168.553511-CDS-F-serratus_M_contig7:1120583..11209031690964168.553511-CDS-F-serratus_M_contig7:1120583..1120903Fucus serratus maleCDSF-serratus_M_contig7 1120584..1120903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7.18140.1

>prot_F-serratus_M_contig7.18140.1 ID=prot_F-serratus_M_contig7.18140.1|Name=mRNA_F-serratus_M_contig7.18140.1|organism=Fucus serratus male|type=polypeptide|length=496bp
MLHRECEVRVLQARLARKRSGNENATIRRNGNRGLSLSVLVSYDGTHAAT
EVCRDKESPSWQRLAIFQINLDERFEGARKALEERLGGGNANAAPRKATA
DDGRGAANVAPPVNPRGQSLNPFAENFVPPPSRTPPRPAPPPPSPPPPQR
PTQARLRTSLIVYLRVLNDNLMSKELVGEIAVDLMTLLRSEGDQLATDRL
GHVGKNPPQPLTDQEILAVDTWVALRERNGELRVQIIVRRGSSDGIIDAR
RQISIDLGRPKEAETAPGASVGIKSPEDGICLESQADTCRCAWPEFEKML
RDGLVKTSVGTGQRSLDECLLEIQEQYDFSVADGYRQGRPEEVGDHLAGR
QGGNQRDDRTPDWPKRNQDVAWLRSCMQLAALRHRSQCIAWAEKLQSSPS
LQHALRSPSAFGVLRTKREDARRTRTQRSNAAGLNQLAGGGLADLVAGGI
PTALQHRPAAMFPNRMEDEDMGIAFEGTDEELGGLGDVTTAIPRVE
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mRNA from alignment at F-serratus_M_contig7:1118616..1120903+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7.18140.1 ID=mRNA_F-serratus_M_contig7.18140.1|Name=mRNA_F-serratus_M_contig7.18140.1|organism=Fucus serratus male|type=mRNA|length=2288bp|location=Sequence derived from alignment at F-serratus_M_contig7:1118616..1120903+ (Fucus serratus male)
CTCGACAACCAAAGTTAACAGCTGAAGCTGAGGTATTTATCAGGTGAACG
TATCAGGTGCAGCTCTTGATTTTATAGACGAACTCCGGCATCTTCGCTGG
GAATAATGCTGCATCGAGAATGCGAGGTTCGCGTGCTGCAAGCTCGCCTG
GCCCGAAAACGGAGGTGAATCGCCAAGTTGATGTTGACAGTCTCTTGAGG
GTAAATACTGTACTCTATAATACTGTACATACATCAAATACACGTCAGTA
CTACAGCAGTACATAACATGGGAGGAATTCCAGCTGACAAAGCTATGAAA
GCAACTATTCCGTCCTTGACGTTGCCCCCATATATCTCCCTTATAGCCTT
CCTTATTTTCTCCTTTCAAATACTGCTGCTCGTGCTTATCAGTGGGAATG
AAAACGCGACCATAAGACGTAATGGCAATCGGGGTCTATCACTTTCCGTC
TTGGTCAGCTACGACGGAACTCATGCAGCAACCGAAGTCTGTCGCGACAA
GGAGAGCCCATCTTGGCAGCGGTTGGCTATATTTCAGATTAATCTTGATG
AGAGATTTGAAGGAGCAAGGAAGGCTTTGGAGGAAAGGCTGGGAGGAGGA
AATGCAAATGCTGCCCCGCGAAAAGCAACTGCTGATGATGGTCGCGGTGC
CGCAAACGTTGCGCCACCGGTAAACCCTCGCGGCCAGTCGCTCAATCCGT
TCGCGGAGAACTTCGTCCCACCACCCTCACGAACTCCACCACGACCTGCA
CCTCCACCTCCATCTCCACCTCCACCTCAACGACCGACACAAGCGCGCCT
TCGTACATCCCTGATTGTATATCTACGAGTGCTAAACGACAACCTCATGT
CAAAGGAATTAGTGGGGGAAATTGCCGTTGACCTCATGACCTTGCTGCGG
TCGGAGGGCGATCAGTTGGCAACGGACCGACTGGGTCATGTGGGAAAAAA
TCCACCCCAGCCATTGACCGATCAGGAAATTCTCGCGGTAGATACGTGGG
TCGCTTTGCGCGAGAGAAACGGGGAACTCCGAGTGCAAATAATTGTTAGG
CGTGGATCCTCCGACGGGATCATCGACGCACGCCGGCAAATTTCTATAGA
CCTTGGAAGGCCCAAGGAGGCGGAGACTGCTCCAGGGGCTTCAGTCGGCA
TTAAGTCACCGGAAGATGGTATTTGTCTTGAAAGTCAAGCTGATACGTGC
CGATGTGCCTGGCCTGAATTCGAAAAAATGCTGAGGGATGGACTGGTGAA
GACAAGCGTGGGTACAGGCCAGCGCTCTCTGGATGAATGCCTTCTCGAAA
TCCAAGAACAGTACGACTTCAGCGTTGCAGACGGATACAGGCAAGGACGG
CCTGAGGAAGTGGGCGACCACCTAGCGGGCCGACAAGGGGGTAATCAGCG
GGATGACAGGACTCCAGACTGGCCGAAACGTAACCAAGATGTGGCCTGGC
TCCGGAGTTGTATGCAGCTAGCGGCTCTAAGACATCGATCTCAGTGCATC
GGTAAGGACGGAATACGGAATCAGGTCCAGTGGGTCGCAGGAGATTCTTT
TCTCAAGGGCGATACAGCATTCATCAGCCTCAGATATGGGAGCTCGTTTC
CAAGGCCCATGTTTCATAGCATCCTCTTTCCATGGTGTTGACTTATTTTT
GCGTAAACGGAGAAATCGCAAAATACAATATGCATACGAGTAATACCTCT
TGGATTTTACAGGGTAAAGCCAAAACACCGAATCGAGCCCTTTACCTAAG
TTCGTAGGAACGTCAAGTTGCCGAAGTACTCGATCGATTCCTGTACAGCA
AAGTAGGGCGTCCTCGTATTAACAGTGTGCATTTCAAGGAGCGAGGGAAT
AATGGTATCCTCTTGAGTATTGTCCTCGCAGGGTTTTTTATTTGGAAACG
AACAAATATACAGCAAACTGAAAAGGGTCTTCCTGCCCAAACATTTTGCA
CGCTTCGCCGATACATAGCTTGGGCAGAAAAGCTACAATCTTCTCCTAGC
CTGCAACATGCCTTGCGGTCGCCTTCGGCATTCGGAGTGCTCCGTACTAA
GCGTGAGGATGCTCGACGGACTCGCACACAAAGATCTAACGCTGCTGGAT
TGAATCAGCTTGCGGGGGGGGGACTTGCGGACCTCGTGGCTGGGGGAATA
CCCACAGCGCTTCAGCACAGACCAGCCGCAATGTTTCCGAACCGCATGGA
GGACGAAGACATGGGTATCGCGTTTGAGGGGACGGATGAGGAGCTGGGCG
GCTTGGGGGACGTCACCACAGCTATCCCTCGCGTTGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7:1118616..1120903+

>mRNA_F-serratus_M_contig7.18140.1 ID=mRNA_F-serratus_M_contig7.18140.1|Name=mRNA_F-serratus_M_contig7.18140.1|organism=Fucus serratus male|type=CDS|length=2976bp|location=Sequence derived from alignment at F-serratus_M_contig7:1118616..1120903+ (Fucus serratus male)
ATGCTGCATCGAGAATGCGAGGTTCGCGTGCTGCAAGCTCGCCTGGCCCG
AAAACGGAGATGCTGCATCGAGAATGCGAGGTTCGCGTGCTGCAAGCTCG
CCTGGCCCGAAAACGGAGTGGGAATGAAAACGCGACCATAAGACGTAATG
GCAATCGGGGTCTATCACTTTCCGTCTTGGTCAGCTACGACGGAACTCAT
GCAGCAACCGAAGTCTGTCGCGACAAGGAGAGCCCATCTTGGCAGCGGTT
GGCTATATTTCAGATTAATCTTGATGAGAGATTTGAAGGAGCAAGGAAGG
CTTTGGAGGAAAGGCTGGGAGGAGGAAATGCAAATGCTGCCCCGCGAAAA
GCAACTGCTGATGATGGTCGCGGTGCCGCAAACGTTGCGCCACCGGTAAA
CCCTCGCGGCCAGTCGCTCAATCCGTTCGCGGAGAACTTCGTCCCACCAC
CCTCACGAACTCCACCACGACCTGCACCTCCACCTCCATCTCCACCTCCA
CCTCAACGACCGACACAAGCGCGCCTTCGTACATCCCTGATTGTATATCT
ACGAGTGCTAAACGACAACCTCATGTCAAAGGAATTAGTGGGGGAAATTG
CCGTTGACCTCATGACCTTGCTGCGGTCGGAGGGCGATCAGTTGGCAACG
GACCGACTGGGTCATGTGGGAAAAAATCCACCCCAGCCATTGACCGATCA
GGAAATTCTCGCGGTAGATACGTGGGTCGCTTTGCGCGAGAGAAACGGGG
AACTCCGAGTGCAAATAATTGTTAGGCGTGGATCCTCCGACGGGATCATC
GACGCACGCCGGCAAATTTCTATAGACCTTGGAAGGCCCAAGGAGGCGGA
GACTGCTCCAGGGGCTTCAGTCGGCATTAAGTCACCGGAAGATGGTATTT
GTCTTGAAAGTCAAGCTGATACGTGCCGATGTGCCTGGCCTGAATTCGAA
AAAATGCTGAGGGATGGACTGGTGAAGACAAGCGTGGGTACAGGCCAGCG
CTCTCTGGATGAATGCCTTCTCGAAATCCAAGAACAGTACGACTTCAGCG
TTGCAGACGGATACAGGCAAGGACGGCCTGAGGAAGTGGGCGACCACCTA
GCGGGCCGACAAGGGGGTAATCAGCGGGATGACAGGACTCCAGACTGGCC
GAAACGTAACCAAGATGTGGCCTGGCTCCGGAGTTGTATGCAGCTAGCGG
CTCTAAGACATCGATCTCAGTGCATCGTGGGAATGAAAACGCGACCATAA
GACGTAATGGCAATCGGGGTCTATCACTTTCCGTCTTGGTCAGCTACGAC
GGAACTCATGCAGCAACCGAAGTCTGTCGCGACAAGGAGAGCCCATCTTG
GCAGCGGTTGGCTATATTTCAGATTAATCTTGATGAGAGATTTGAAGGAG
CAAGGAAGGCTTTGGAGGAAAGGCTGGGAGGAGGAAATGCAAATGCTGCC
CCGCGAAAAGCAACTGCTGATGATGGTCGCGGTGCCGCAAACGTTGCGCC
ACCGGTAAACCCTCGCGGCCAGTCGCTCAATCCGTTCGCGGAGAACTTCG
TCCCACCACCCTCACGAACTCCACCACGACCTGCACCTCCACCTCCATCT
CCACCTCCACCTCAACGACCGACACAAGCGCGCCTTCGTACATCCCTGAT
TGTATATCTACGAGTGCTAAACGACAACCTCATGTCAAAGGAATTAGTGG
GGGAAATTGCCGTTGACCTCATGACCTTGCTGCGGTCGGAGGGCGATCAG
TTGGCAACGGACCGACTGGGTCATGTGGGAAAAAATCCACCCCAGCCATT
GACCGATCAGGAAATTCTCGCGGTAGATACGTGGGTCGCTTTGCGCGAGA
GAAACGGGGAACTCCGAGTGCAAATAATTGTTAGGCGTGGATCCTCCGAC
GGGATCATCGACGCACGCCGGCAAATTTCTATAGACCTTGGAAGGCCCAA
GGAGGCGGAGACTGCTCCAGGGGCTTCAGTCGGCATTAAGTCACCGGAAG
ATGGTATTTGTCTTGAAAGTCAAGCTGATACGTGCCGATGTGCCTGGCCT
GAATTCGAAAAAATGCTGAGGGATGGACTGGTGAAGACAAGCGTGGGTAC
AGGCCAGCGCTCTCTGGATGAATGCCTTCTCGAAATCCAAGAACAGTACG
ACTTCAGCGTTGCAGACGGATACAGGCAAGGACGGCCTGAGGAAGTGGGC
GACCACCTAGCGGGCCGACAAGGGGGTAATCAGCGGGATGACAGGACTCC
AGACTGGCCGAAACGTAACCAAGATGTGGCCTGGCTCCGGAGTTGTATGC
AGCTAGCGGCTCTAAGACATCGATCTCAGTGCATCGCTTGGGCAGAAAAG
CTACAATCTTCTCCTAGCCTGCAACATGCCTTGCGGTCGCCTTCGGCATT
CGGAGTGCTCCGTACTAAGCGTGAGGATGCTCGACGGACTCGCACACAAA
GATCTAACGCTGCTGGATTGAATCAGCTTGCGGGGGGGGGACTTGCGGAC
CTCGTGGCTGGGGGAATACCCACAGCGCTTCAGCACAGACCAGCCGCAAT
GTTTCCGAACCGCATGGAGGACGAAGACATGGGTATCGCGTTTGAGGGGA
CGGATGAGGAGCTGGGCGGCTTGGGGGACGTCACCACAGCTATCCCTCGC
GTTGAGCTTGGGCAGAAAAGCTACAATCTTCTCCTAGCCTGCAACATGCC
TTGCGGTCGCCTTCGGCATTCGGAGTGCTCCGTACTAAGCGTGAGGATGC
TCGACGGACTCGCACACAAAGATCTAACGCTGCTGGATTGAATCAGCTTG
CGGGGGGGGGACTTGCGGACCTCGTGGCTGGGGGAATACCCACAGCGCTT
CAGCACAGACCAGCCGCAATGTTTCCGAACCGCATGGAGGACGAAGACAT
GGGTATCGCGTTTGAGGGGACGGATGAGGAGCTGGGCGGCTTGGGGGACG
TCACCACAGCTATCCCTCGCGTTGAG
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