mRNA_F-serratus_M_contig7.18132.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7.18132.1
Unique NamemRNA_F-serratus_M_contig7.18132.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig7.18132.1 vs. uniprot
Match: D7FLF9_ECTSI (Flap endonuclease 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLF9_ECTSI)

HSP 1 Score: 668 bits (1723), Expect = 4.360e-236
Identity = 373/479 (77.87%), Postives = 403/479 (84.13%), Query Frame = 1 
Query:   61 MGIHGLTKLLSDEAPNCMKEVDLGSLTGRKVAIDASMAMYQFLIAVRSGGEGQAQMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPDLKGGELAKRKEKRTKAEADLKTATEADEKSDVDKFSKRLVRVTSDHNDDCKALLRLMGVPVLTAPSEAEAQCAALAREGVVYGAATEDMDALTFKTPKLLRRMTFSGTQQPILEVDYTKLLQGLDLSHEKFVDLCILCGCDYTGSIKGIGPKKALALIRQHGTIEEIVKHLNPAKYPLPDDWLEPSERAEKRKQGXXXXXXXXXXXXXXXXXEEAVETTELAKQEIVPDREVESPVG--------------------EDIIPSTKREREEENDEDCEEDMDDTPPMYRQARRLFLEPDVEPAGEIKLKWTDPDEAGLLKFLVEDKGFNAERVASGIAKLKAARKNVSQKRMDSFFSVLPSPNAGTKPSKGKGAPGAKGKTAGAK 1437
            MGIHGLTKLLSDEAPNCMKEVDL SLTGRKVA+DASMAMYQFLIAVRSGGEGQ+QMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPP LKGGELAKR  KR KAEA+LK ATEAD+K+DVDKFSKRLVRVT DHN+DCK LL LMGVPV+TAPSEAEAQCAALAREGVVYG ATEDMDALTF+TPKLLRRMTFSG+ QPILEVDY KLLQGL+LSHEKFVDLC+LCGCDYTGSIKGIGPKKALAL+RQHGTIEEI+KHL+  KYP+PDDWLEP+ERAE+RK  XXXXXXXXXXXXXXXXX  A    E A  E V + +V+   G                    E    S KRERE E+  + E++MDDTPPMYRQAR LFL+P+VEPAGE KLKWTDPDE GL+KFLVE+KGFNAERVASGI KLK ARKNVSQKRMDSFFSV+P+PNAG K    K   GAKGK  G K
Sbjct:    1 MGIHGLTKLLSDEAPNCMKEVDLDSLTGRKVAVDASMAMYQFLIAVRSGGEGQSQMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPQLKGGELAKRTAKRAKAEAELKVATEADDKNDVDKFSKRLVRVTRDHNEDCKKLLSLMGVPVVTAPSEAEAQCAALAREGVVYGTATEDMDALTFQTPKLLRRMTFSGSNQPILEVDYQKLLQGLELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPVPDDWLEPAERAERRKXXXXXXXXXXXXXXXXXXXXXA----ETANPEAVSEEDVQQKEGDSDSDKAKADTPDHGVSVAKEAADVSAKRERETEDAAESEQEMDDTPPMYRQARGLFLKPEVEPAGEYKLKWTDPDEPGLIKFLVEEKGFNAERVASGIVKLKGARKNVSQKRMDSFFSVIPNPNAGAKKPAPKAKAGAKGKAGGKK 475
[Close]
BLAST of mRNA_F-serratus_M_contig7.18132.1 vs. uniprot
Match: A0A835Z748_9STRA (Flap endonuclease 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z748_9STRA)

HSP 1 Score: 456 bits (1172), Expect = 1.230e-152
Identity = 277/464 (59.70%), Postives = 321/464 (69.18%), Query Frame = 1 
Query:   61 MGIHGLTKLLSDEAPNCMKEVDLGSLTGRKVAIDASMAMYQFLIAVRSGGEG-QAQMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPDLKGGELAKRKEKRTKAEADLKTATEADEKSDVDKFSKRLVRVTSDHNDDCKALLRLMGVPVLTAPSEAEAQCAALAREGVVYGAATEDMDALTFKTPKLLRRMTFSGTQQPILEVDYTKLLQGLDLSHEKFVDLCILCGCDYTGSIKGIGPKKALALIRQHGTIEEIVKHLNPAKYPLPDDWLEPSERAEKRKQGXXXXXXXXXXXXXXXXXEEAVETTELAKQEIVPDREVE---------------------SPVGEDIIPSTKREREEENDEDCEEDMDDTPPMYRQARRLFLEPDVEPAGEIKLKWTDPDEAGLLKFLVEDKGFNAERVASGIAKLKAARKNVSQKRMDSFF-SVLPSPNAGTK 1383
            MGI GLTKLL+DE PNC+KE DL SLTGRK+AIDASMAMYQFLIAVRSG EG  A MLTNEAGEVTSHIQGMFNRTI++L+ G+KP Y+FDGKPP LKGGELAKR  KR KAE D + A E     DVDKFSKRLVRVT+ HN+DCK LLRLMGVPV+ A  EAEAQCAALAR+GVV+G  TEDMDALTF+TPKL+RR+T +   QPI+EVDY  +L+GL L+HE+FVD+CILCGCDYT SI+GIGPKKAL LI++H +IEEI+KHL+ +K+ +P DW+         K  XXXXXXXXXXXXXXXXX                                          +PV ++ +P+ K                   PMY++ARRLFLEPDV PA    LKWTDP+   L  FLVE   FNAERVA+GI KLK ARK   Q RMD+FF S  P P  GTK
Sbjct:    1 MGIQGLTKLLNDECPNCIKEYDLNSLTGRKIAIDASMAMYQFLIAVRSGSEGVAATMLTNEAGEVTSHIQGMFNRTIKLLTSGLKPVYVFDGKPPTLKGGELAKRAAKRVKAETDWQDARENGTTEDVDKFSKRLVRVTTQHNEDCKTLLRLMGVPVVDASCEAEAQCAALARDGVVFGTGTEDMDALTFRTPKLIRRLT-TNKNQPIMEVDYAGVLEGLGLTHEEFVDMCILCGCDYTDSIRGIGPKKALMLIKKHHSIEEILKHLDRSKHGIPADWIPGETPTPLAKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPAAPVVQEAVPADKI------------------PMYKEARRLFLEPDVFPANTYDLKWTDPNVEELTTFLVEKMQFNAERVAAGIKKLKEARKKGGQTRMDTFFKSTAPPP--GTK 443
[Close]
BLAST of mRNA_F-serratus_M_contig7.18132.1 vs. uniprot
Match: A0A7S2SD31_9STRA (Flap endonuclease 1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD31_9STRA)

HSP 1 Score: 429 bits (1103), Expect = 3.230e-142
Identity = 258/438 (58.90%), Postives = 316/438 (72.15%), Query Frame = 1 
Query:   61 MGIHGLTKLLSDEAPNCMKEVDLGSLTGRKVAIDASMAMYQFLIAVRSGGEGQA--QMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPDLKGGELAKRKEKRTKAEADLKTATEADEKSDVDKFSKRLVRVTSDHNDDCKALLRLMGVPVLTAPSEAEAQCAALAREGVVYGAATEDMDALTFKTPKLLRRMTFSGTQQ-PILEVDYTKLLQGLDLSHEKFVDLCILCGCDYTGSIKGIGPKKALALIRQHGTIEEIVKHLNPAKYPLPDDWLEPSER-AEKRKQGXXXXXXXXXXXXXXXXXEEAVETT----ELAKQEIVPDREVESPVGEDIIPSTKREREEENDEDCEEDMDDTPPMYRQARRLFLEPDVEPAGEIKLKWTDPDEAGLLKFLVEDKGFNAERVASGIAKLKAARKNVSQKRMDSFF 1350
            MGIHGL  L++DEAP   KE D+ +L GRKVAIDASMA+YQFLIAVRS     A  QMLTNEAGEVTSHIQG+FNRTIRML+ GVKPCY+FDGKPP LK GELAKR + RTKA+ +LK A E ++  D+DK+SKRLV+VT +HN+D K LLRLMGVPV+ AP EAEAQCAALA+ G+V+  ATEDMDALTF+TP LL+RMTFS  QQ PI+++ + KLL GL ++ E+FVDLCILCGCDY     GIGPK AL L+R++G +E IVK+L+  K+PLP  W  P+ + A+     XXXXXXXXXXXXXXXX E   E T    E   QE  PD + E         S +  +E E ++  E       P++ + R+LF  P V+      LKWT+PDE GL+KFLVE+KGFNAERV+SGI KLK  +   +Q+RMDSFF
Sbjct:   22 MGIHGLMNLVADEAPESCKEQDIKALVGRKVAIDASMALYQFLIAVRSAEHAGAVTQMLTNEAGEVTSHIQGLFNRTIRMLTNGVKPCYVFDGKPPTLKSGELAKRTKARTKAKEELKAAEEREDAEDIDKYSKRLVKVTREHNEDAKRLLRLMGVPVIEAPGEAEAQCAALAKAGLVWATATEDMDALTFQTPHLLKRMTFSAKQQAPIMQISHDKLLHGLGITQEQFVDLCILCGCDYCDRPSGIGPKTALKLVRKYGNLENIVKNLDKKKHPLPVGWERPAPKPADPAPAAXXXXXXXXXXXXXXXXSEGGSEVTHEENETDAQE--PDAKPEPAA------SAETAQEPEKEQPWE-------PLFVEVRQLFHTPLVQDPVNCSLKWTEPDEEGLIKFLVEEKGFNAERVSSGIKKLKEMKGKGTQQRMDSFF 444
[Close]
BLAST of mRNA_F-serratus_M_contig7.18132.1 vs. uniprot
Match: A0A6G0WCI0_9STRA (Flap endonuclease 1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCI0_9STRA)

HSP 1 Score: 401 bits (1031), Expect = 1.630e-132
Identity = 222/441 (50.34%), Postives = 280/441 (63.49%), Query Frame = 1 
Query:   61 MGIHGLTKLLSDEAPNCMKEVDLGSLTGRKVAIDASMAMYQFLIAVRSGGE--GQAQMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPDLKGGELAKRKEKRTKAEADLKTATEADEKSDVDKFSKRLVRVTSDHNDDCKALLRLMGVPVLTAPSEAEAQCAALAREGVVYGAATEDMDALTFKTPKLLRRMTFSGTQQ-PILEVDYTKLLQGLDLSHEKFVDLCILCGCDYTGSIKGIGPKKALALIRQHGTIEEIVKHL--NPAK-YPLPDDWLEPSERAEKRKQGXXXXXXXXXXXXXXXXXEEAVETTELAKQEIVPDREVESPVGEDIIPSTKREREEENDEDCEEDMDDTPPMYRQARRLFLEPDVEPAGEIKLKWTDPDEAGLLKFLVEDKGFNAERVASGIAKLKAARKNVSQKRMDSFFSVLPS 1365
            MGI GL KLL+DEAP C+KE+ + +L+GR VAIDASMA+YQFL+AVRS GE  G AQMLTNEAGEVTSHIQGMFNRTIR++  G+KP Y+FDGKPP +K GELAKR E+R  A+ +LKTATE     D+DKF+KRLVR T  HN+DCK LL+LMGVP + AP EAEA CAALA+   V+ + TEDMD +TF TP L RR+T + +++ PILE+   K+LQ L+L+HE+FVDLCILCGCDY  +I+GIGPKKAL+ I++H  IE  V HL  +P+K   +PD+WL                                                     GED I                         Y+QAR +F+EPDV     +++KW DP    L +FLVE  GFN+ERV + I KLK A+   SQ+R++SFF+VLPS
Sbjct:    1 MGIKGLMKLLTDEAPGCVKELQMSALSGRSVAIDASMALYQFLVAVRSNGEHGGAAQMLTNEAGEVTSHIQGMFNRTIRLMENGLKPVYVFDGKPPVMKSGELAKRSERRQTAQENLKTATEEGNVEDIDKFNKRLVRATPQHNEDCKELLQLMGVPFINAPCEAEATCAALAKSNKVFASGTEDMDVMTFGTPVLFRRLTIAASRKLPILEIRLDKVLQELELTHEQFVDLCILCGCDYCDTIRGIGPKKALSAIKEHKNIETFVAHLQQHPSKGITVPDEWL-----------------------------------------------------GEDAI-------------------------YKQARAMFIEPDVVDTSSVEIKWKDPSVEELRQFLVEKHGFNSERVMNAIEKLKKAKTTHSQQRLESFFTVLPS 363
[Close]
BLAST of mRNA_F-serratus_M_contig7.18132.1 vs. uniprot
Match: W7U4Z8_9STRA (Flap endonuclease 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4Z8_9STRA)

HSP 1 Score: 396 bits (1018), Expect = 1.450e-129
Identity = 222/453 (49.01%), Postives = 284/453 (62.69%), Query Frame = 1 
Query:   61 MGIHGLTKLLSDEAPNCMKEVDLGSLTGRKVAIDASMAMYQFLIAVRSGGEGQA-QMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPDLKGGELAKRKEKRTKAEADLKTATEADEKSDVDKFSKRLVRVTSDHNDDCKALLRLMGVPVLTAPSEAEAQCAALAREGVVYGAATEDMDALTFKTPKLLRRMTFSGTQQPILEVDYTKLLQGLDLSHEKFVDLCILCGCDYTGSIKGIGPKKALALIRQHGTIEEIVKHLNPAKYPLPDDWL-------------------EPSERAEKRKQGXXXXXXXXXXXXXXXXX---EEAVETTELAKQEIVPDREVESPVGEDIIPSTKREREEENDEDCEEDMDDTPPMYRQARRLFLEPDVEPAGEIKLKWTDPDEAGLLKFLVEDKGFNAERVASGIAKLKAARKNVSQKRMDSFF 1350
            MGI GLTKL++DEAP  +KE  +    GR VA+DASMA+YQFLIA+R G  G A   LTNEAGEVTSHIQG+FNRTIRML+ G+KP ++FDGKPP LKGGEL KR+EKR KAE++LK A E     + D+ SKRLVR     + DCK LL LMGVP L AP EAEAQCAALA+ G VY  ATED D LTF TP+LLR MT +G   PI E+DY K+L+GL L+H +F+DLCIL GCDYT +I+GIGPK AL LI+++G IE ++++++  KY +P +WL                    P E  +K   G                    EE ++   +  +E+ PD   +S  GE +                  +M    P Y  AR LF++P++    E+  KW +P+EAGL  FL++  GFN +RV SGIAKLKA+R  + QKR+DSFF
Sbjct:    1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKIGKVYAVATEDTDTLTFATPRLLRNMTSAG-DNPIKEIDYKKMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEWLPRIKVRKPSSLPPSAPPSVSPVEEGDKAMPGDENACKTAEVDSKAGMEGEKEEGIKAAAIVAREVAPDEPAKSVEGEVM------------------EM----PAYVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQQKRLDSFF 430
[Close]
BLAST of mRNA_F-serratus_M_contig7.18132.1 vs. uniprot
Match: W4FTR5_9STRA (Flap endonuclease 1 n=2 Tax=Aphanomyces TaxID=100860 RepID=W4FTR5_9STRA)

HSP 1 Score: 393 bits (1009), Expect = 2.930e-129
Identity = 218/441 (49.43%), Postives = 281/441 (63.72%), Query Frame = 1 
Query:   61 MGIHGLTKLLSDEAPNCMKEVDLGSLTGRKVAIDASMAMYQFLIAVRSGGE--GQAQMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPDLKGGELAKRKEKRTKAEADLKTATEADEKSDVDKFSKRLVRVTSDHNDDCKALLRLMGVPVLTAPSEAEAQCAALAREGVVYGAATEDMDALTFKTPKLLRRMTFSGTQQ-PILEVDYTKLLQGLDLSHEKFVDLCILCGCDYTGSIKGIGPKKALALIRQHGTIEEIVKHL--NPAK-YPLPDDWLEPSERAEKRKQGXXXXXXXXXXXXXXXXXEEAVETTELAKQEIVPDREVESPVGEDIIPSTKREREEENDEDCEEDMDDTPPMYRQARRLFLEPDVEPAGEIKLKWTDPDEAGLLKFLVEDKGFNAERVASGIAKLKAARKNVSQKRMDSFFSVLPS 1365
            MGI GL KLL+DEAP C+KE+ + +L+GR VAIDASMA+YQFL+AVRS GE  G AQMLTN+AG+VTSHIQGMFNRTIR++  G+KP Y+FDGKPP +KGGELAKR E+R  A+ +LKTATE     D++KF+KRLVR T  HN+DCK LL LMGVP + AP EAEA CAALA+   V+ + TEDMD +TF TP L RR+T + +++ PILE+   K+L  L+LS+E+FVDLCILCGCDY  SI+G+GPKKAL+ I++H +IE  V HL  +P+K   +PD+WL                                                     GED I                         Y+QAR +FLEPDV    ++ +KW DP+   L +FLV+  GF+ +RV + I KLK A+ + SQ+RM+SFF+VLPS
Sbjct:    1 MGIKGLMKLLTDEAPGCVKELQMSALSGRSVAIDASMALYQFLVAVRSNGEHGGAAQMLTNDAGDVTSHIQGMFNRTIRLMENGLKPVYVFDGKPPVMKGGELAKRTERRQTAQDNLKTATEEGNVEDIEKFNKRLVRATPQHNNDCKELLALMGVPFINAPCEAEATCAALAKHNKVFASGTEDMDVMTFGTPVLFRRLTIAASRKLPILEIKLDKVLAELELSYEQFVDLCILCGCDYCDSIRGVGPKKALSAIKEHKSIENYVTHLQAHPSKGITVPDEWL-----------------------------------------------------GEDAI-------------------------YKQARAMFLEPDVIDMADVDIKWKDPNVDDLRQFLVDKHGFSLDRVMNAIEKLKKAKTSHSQQRMESFFTVLPS 363
[Close]
BLAST of mRNA_F-serratus_M_contig7.18132.1 vs. uniprot
Match: A0A8K1FPW3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FPW3_PYTOL)

HSP 1 Score: 388 bits (997), Expect = 2.370e-127
Identity = 224/457 (49.02%), Postives = 282/457 (61.71%), Query Frame = 1 
Query:   61 MGIHGLTKLLSDEAPNCMKEV-DLGSLTGRKVAIDASMAMYQFLIAVRSG-GEGQAQMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPDLKGGELAKRKEKRTKAEADLKTATEADEKSDVDKFSKRLVRVTSDHNDDCKALLRLMGVPVLTAPSEAEAQCAALAREGVVYGAATEDMDALTFKTPKLLRRMTFSGTQQ-PILEVDYTKLLQGLDLSHEKFVDLCILCGCDYTGSIKGIGPKKALALIRQHGTIEEIVKHLNPAKYP---LPDDWLEPSERAEKRKQGXXXXXXXXXXXXXXXXXEEAVETTELAKQEIVPDREVESPVGEDIIPSTKREREEENDEDCEEDMDDTPPMYRQARRLFLEPDVEPAGEIKLKWTDPDEAGLLKFLVEDKGFNAERVASGIAKLKAARKNVSQKRMDSFFSVLPSPNAGTK---PSKGKGA 1404
            MGI GL KLL +EAP C++E+  +  L GR VA+DASMA+YQFLIAVRS  G G +Q LTNEAGEVTSH+QGMF+RTIR++  G+KP Y+FDGKPP LK GELAKRK+KRT+AEA L+ ATEA    D+D+F+KRLV+ T  HN+DCK LLRLMGVPVLTAP EAEA CA LA+ G V+ + TEDMDALTF TP L RR+T S  ++ PILEV   + L+ L L+ E+FVDLCILCGCDY  +I+GIGPKKALA I++HG+IE  ++ L   K     +P++WL                                                     GE+                         P+Y+ AR +F+  +V    E++LKW  P E  L  FLV+  GF + RV S I +LK  +   SQKR+DSFF+VLPS +AGTK   P+ GKGA
Sbjct:    1 MGIKGLMKLLQEEAPACIREIPQMTQLAGRVVALDASMALYQFLIAVRSSDGGGPSQALTNEAGEVTSHLQGMFSRTIRLMENGIKPVYVFDGKPPVLKSGELAKRKDKRTQAEAGLQEATEAGNVEDIDRFNKRLVKATPQHNEDCKELLRLMGVPVLTAPCEAEATCATLAKSGKVFASGTEDMDALTFGTPVLFRRLTISAAKKVPILEVKLDRALEALSLTQEQFVDLCILCGCDYCDTIRGIGPKKALAAIKEHGSIENFLEALQKNKSKGVVIPEEWL-----------------------------------------------------GEN-------------------------PIYKSAREMFVNAEVANPDEVELKWNGPSEEELHAFLVDKHGFQSPRVLSAIERLKKCKSTQSQKRLDSFFTVLPSSSAGTKRKSPATGKGA 379
[Close]
BLAST of mRNA_F-serratus_M_contig7.18132.1 vs. uniprot
Match: A0A0H5R5L4_9EUKA (Flap endonuclease 1 n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R5L4_9EUKA)

HSP 1 Score: 387 bits (994), Expect = 3.200e-127
Identity = 204/431 (47.33%), Postives = 281/431 (65.20%), Query Frame = 1 
Query:   61 MGIHGLTKLLSDEAPNCMKEVDLGSLTGRKVAIDASMAMYQFLIAVRSGGEGQAQMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPDLKGGELAKRKEKRTKAEADLKTATEADEKSDVDKFSKRLVRVTSDHNDDCKALLRLMGVPVLTAPSEAEAQCAALAREGVVYGAATEDMDALTFKTPKLLRRMTFSGTQQ-PILEVDYTKLLQGLDLSHEKFVDLCILCGCDYTGSIKGIGPKKALALIRQHGTIEEIVKHLNPAKYPLPDDWLEPSERAEKRKQGXXXXXXXXXXXXXXXXXEEAVETTELAKQEIVPDREVESPVGEDIIPSTKREREEENDEDCEEDMDDTPPMYRQARRLFLEPDVEPAGEIKLKWTDPDEAGLLKFLVEDKGFNAERVASGIAKLKAARKNVSQKRMDSFF 1350
            MGI GL+KL+SD AP+ +KE ++    GRK+AIDASMA+YQF+IA+R+ GE   Q++ N+ GEVTSH+QG+F+RTIRM+S G+KP Y+FDGKPP +K GEL KR E+RT+AEA L TAT+    +D+DKFS+R V+VT ++N++C  LL LMGVP++ AP EAEAQCAALA+EGVV+  ATED+DALTF TP LLR +TFS  ++ P+ E+   ++L+GLD++ E+F +LCILCGCDYTGSI+GIGP+K+LALI+++  IE  +KH++  KY +PDD+L                                                                                   Y+++ RLF+ P+V PAG +KL+W  PDE GL+KFLV++K F+ +RV SG+AKLK A+K  SQ+R++SFF
Sbjct:    1 MGIKGLSKLISDYAPSAVKEKEISHYFGRKIAIDASMAIYQFMIAIRTTGESAGQLM-NDNGEVTSHLQGLFHRTIRMMSNGIKPVYVFDGKPPTMKSGELLKRFERRTEAEASLSTATQEANHADIDKFSRRTVKVTKENNEECIKLLSLMGVPIVRAPCEAEAQCAALAKEGVVFATATEDLDALTFGTPILLRYLTFSQARKMPVAEIHLDEVLKGLDITMEQFRELCILCGCDYTGSIRGIGPQKSLALIKEYSDIETALKHIDTKKYAVPDDFL-----------------------------------------------------------------------------------YQESERLFISPEVLPAGSVKLEWKAPDEDGLIKFLVDEKQFDLDRVKSGLAKLKEAKKKSSQQRLESFF 347
[Close]
BLAST of mRNA_F-serratus_M_contig7.18132.1 vs. uniprot
Match: A0A5D6Y0N9_9STRA (Flap endonuclease 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0N9_9STRA)

HSP 1 Score: 386 bits (991), Expect = 1.960e-126
Identity = 218/445 (48.99%), Postives = 276/445 (62.02%), Query Frame = 1 
Query:   61 MGIHGLTKLLSDEAPNCMKEV-DLGSLTGRKVAIDASMAMYQFLIAVRS--GGEGQAQMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPDLKGGELAKRKEKRTKAEADLKTATEADEKSDVDKFSKRLVRVTSDHNDDCKALLRLMGVPVLTAPSEAEAQCAALAREGVVYGAATEDMDALTFKTPKLLRRMTFSGTQQ-PILEVDYTKLLQGLDLSHEKFVDLCILCGCDYTGSIKGIGPKKALALIRQHGTIEEIVKHL--NPAK-YPLPDDWLEPSERAEKRKQGXXXXXXXXXXXXXXXXXEEAVETTELAKQEIVPDREVESPVGEDIIPSTKREREEENDEDCEEDMDDTPPMYRQARRLFLEPDVEPAGEIKLKWTDPDEAGLLKFLVEDKGFNAERVASGIAKLKAARKNVSQKRMDSFFSVLPSPNA 1374
            MGI GL KLL +EAP C+KE+  +  L GR VA+DASMA+YQFLIA+RS  GG   AQ LTNEAGEVTSH+QGMF+RTIRM+  G+KP Y+FDGKPP +KGGELAKR ++R +A+  L  ATEA    D+D+F+KRLVR T+ H++DCK LLRLMGVPVLTAP EAEA CAALA+ G V+ A TEDMDALTF +P L RR+TF+  ++ P+LEV   + L+ L L+HE+FVDLCILCGCDY  +++G+GPKKA A I++H TIE  +  L  N +K   +PD+WL                                                     GED I                         Y+QAR +F+ P+V  A E+++KW DP EA LL FLV   GF   RV S I +LK ++   SQKR+DSFF+VLP+  A
Sbjct:    1 MGIKGLMKLLQEEAPGCIKEIPQMSQLAGRAVALDASMAIYQFLIAIRSSDGGGAPAQALTNEAGEVTSHLQGMFSRTIRMMESGIKPVYVFDGKPPTMKGGELAKRSDRRAEAQKSLDEATEAGNSEDIDRFNKRLVRATTQHSEDCKELLRLMGVPVLTAPCEAEATCAALAKSGKVFAAGTEDMDALTFGSPVLYRRLTFAAAKKVPVLEVKLERALEDLGLTHEQFVDLCILCGCDYCDTVRGVGPKKAFAGIKEHKTIENFLAALQKNSSKGVTIPDEWL-----------------------------------------------------GEDAI-------------------------YKQARTMFVAPEVVDASEVEIKWKDPLEAELLAFLVGKHGFQEARVLSAIERLKKSKGTQSQKRLDSFFTVLPAAGA 367
[Close]
BLAST of mRNA_F-serratus_M_contig7.18132.1 vs. uniprot
Match: UPI000359B596 (flap endonuclease 1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359B596)

HSP 1 Score: 385 bits (988), Expect = 2.480e-126
Identity = 209/434 (48.16%), Postives = 271/434 (62.44%), Query Frame = 1 
Query:   61 MGIHGLTKLLSDEAPNCMKEVDLGSLTGRKVAIDASMAMYQFLIAVRSGGEGQAQMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPDLKGGELAKRKEKRTKAEADLKTATEADEKSDVDKFSKRLVRVTSDHNDDCKALLRLMGVPVLTAPSEAEAQCAALAREGVVYGAATEDMDALTFKTPKLLRRMTFSGTQQ-PILEVDYTKLLQGLDLSHEKFVDLCILCGCDYTGSIKGIGPKKALALIRQHGTIEEIVKHLNPAKYPLPDDWLEPSERAEKRKQGXXXXXXXXXXXXXXXXXEEAVETTELAKQEIVPDREVESPVGEDIIPSTKREREEENDEDCEEDMDDTPPMYRQARRLFLEPDVEPAGEIKLKWTDPDEAGLLKFLVEDKGFNAERVASGIAKLKAARKNVSQKRMDSFFSVL 1359
            MGI GLTKLL D AP+ MKE ++ S  GRKVAIDASM++YQFLIAVR  G      LTNE GE TSH+ GMF RTIRM+  G+KP Y+FDGKPPD+K GELAKRKEKR +A+ +L+ A EA ++ +V+KFS+RLV+VT +HND+CK LL LMG+P + AP EAEAQCAAL + G V+   TEDMD+LTF +  +LR +TFS  ++ PI E +  +LL  L LS ++F+DLCIL GCDY  SIKGIGPK+A+ LI+QH +IEEI+KHL+  KYP+P+DW                                                                                   MY++ARRLF EP+V  A ++ LKWTDPDE GL++F+V  K F+ ER+ +G+ KL+ A++  +Q RMDSFFSV+
Sbjct:    1 MGIQGLTKLLGDCAPSSMKENEIKSFFGRKVAIDASMSIYQFLIAVRQDGS----QLTNEEGETTSHLMGMFYRTIRMVENGIKPVYVFDGKPPDMKSGELAKRKEKRDEAQKELEKAEEAGDEENVEKFSRRLVKVTKEHNDECKKLLTLMGIPYVEAPCEAEAQCAALVKAGKVFATGTEDMDSLTFGSSVVLRHLTFSEARKMPIKEYNLGRLLSELALSQDEFIDLCILLGCDYCDSIKGIGPKRAIELIKQHRSIEEILKHLDKKKYPVPEDW-----------------------------------------------------------------------------------MYKEARRLFQEPEVADAEKLDLKWTDPDEEGLVEFMVSQKNFSEERIRNGVKKLQKAKQGTTQGRMDSFFSVV 347
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7.18132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF9_ECTSI4.360e-23677.87Flap endonuclease 1 n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835Z748_9STRA1.230e-15259.70Flap endonuclease 1 n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2SD31_9STRA3.230e-14258.90Flap endonuclease 1 n=1 Tax=Rhizochromulina marina... [more]
A0A6G0WCI0_9STRA1.630e-13250.34Flap endonuclease 1 n=1 Tax=Aphanomyces euteiches ... [more]
W7U4Z8_9STRA1.450e-12949.01Flap endonuclease 1 n=2 Tax=Nannochloropsis gadita... [more]
W4FTR5_9STRA2.930e-12949.43Flap endonuclease 1 n=2 Tax=Aphanomyces TaxID=1008... [more]
A0A8K1FPW3_PYTOL2.370e-12749.02Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0H5R5L4_9EUKA3.200e-12747.33Flap endonuclease 1 n=1 Tax=Spongospora subterrane... [more]
A0A5D6Y0N9_9STRA1.960e-12648.99Flap endonuclease 1 n=1 Tax=Pythium brassicum TaxI... [more]
UPI000359B5962.480e-12648.16flap endonuclease 1 n=1 Tax=Aplysia californica Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7contigF-serratus_M_contig7:595648..603853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score676.8
Seed ortholog evalue7.4e-192
Seed eggNOG ortholog2880.D7FLF9
Preferred nameFEN1
KEGG koko:K04799
KEGG Pathwayko03030,ko03410,ko03450,map03030,map03410,map03450
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000287,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000731,GO:0000734,GO:0000737,GO:0001302,GO:0001654,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004521,GO:0004523,GO:0004527,GO:0004529,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006284,GO:0006286,GO:0006302,GO:0006303,GO:0006308,GO:0006309,GO:0006310,GO:0006312,GO:0006401,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007063,GO:0007275,GO:0007423,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0007568,GO:0007569,GO:0007610,GO:0007611,GO:0007613,GO:0008150,GO:0008152,GO:0008219,GO:0008297,GO:0008309,GO:0008409,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009987,GO:0010564,GO:0010638,GO:0012501,GO:0016043,GO:0016070,GO:0016311,GO:0016787,GO:0016788,GO:0016796,GO:0016888,GO:0016891,GO:0016893,GO:0016895,GO:0017108,GO:0018130,GO:0019438,GO:0019439,GO:0019725,GO:0022402,GO:0022411,GO:0022413,GO:0022414,GO:0022616,GO:0030145,GO:0030154,GO:0030262,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032501,GO:0032502,GO:0032505,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0034655,GO:0035312,GO:0035753,GO:0035822,GO:0035861,GO:0042592,GO:0043010,GO:0043137,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045145,GO:0045165,GO:0045787,GO:0045876,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0048256,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051128,GO:0051130,GO:0051276,GO:0051716,GO:0051726,GO:0051908,GO:0051983,GO:0051984,GO:0060041,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0090068,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090734,GO:0097159,GO:0097194,GO:0098501,GO:0098502,GO:0104004,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902969,GO:1903047,GO:1903469,GO:1904162,GO:2001252
EggNOG free text desc.endonuclease activity
EggNOG OGsCOG0258@1,KOG2519@2759
Ec32 ortholog descriptionXPG-I domain
Ec32 orthologEc-12_008010.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400,ko04147
Exons10
Model size1748
Cds size1425
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7.18132.1prot_F-serratus_M_contig7.18132.1Fucus serratus malepolypeptideF-serratus_M_contig7 595911..603793 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932139.8693204-UTR-F-serratus_M_contig7:595647..5959101622932139.8693204-UTR-F-serratus_M_contig7:595647..595910Fucus serratus maleUTRF-serratus_M_contig7 595648..595910 -
1690964167.2413988-UTR-F-serratus_M_contig7:595647..5959101690964167.2413988-UTR-F-serratus_M_contig7:595647..595910Fucus serratus maleUTRF-serratus_M_contig7 595648..595910 -
1622932140.6784878-UTR-F-serratus_M_contig7:603793..6038531622932140.6784878-UTR-F-serratus_M_contig7:603793..603853Fucus serratus maleUTRF-serratus_M_contig7 603794..603853 -
1690964167.3809724-UTR-F-serratus_M_contig7:603793..6038531690964167.3809724-UTR-F-serratus_M_contig7:603793..603853Fucus serratus maleUTRF-serratus_M_contig7 603794..603853 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932140.478259-CDS-F-serratus_M_contig7:595910..5960521622932140.478259-CDS-F-serratus_M_contig7:595910..596052Fucus serratus maleCDSF-serratus_M_contig7 595911..596052 -
1690964167.2617424-CDS-F-serratus_M_contig7:595910..5960521690964167.2617424-CDS-F-serratus_M_contig7:595910..596052Fucus serratus maleCDSF-serratus_M_contig7 595911..596052 -
1622932140.5348063-CDS-F-serratus_M_contig7:596172..5962531622932140.5348063-CDS-F-serratus_M_contig7:596172..596253Fucus serratus maleCDSF-serratus_M_contig7 596173..596253 -
1690964167.272588-CDS-F-serratus_M_contig7:596172..5962531690964167.272588-CDS-F-serratus_M_contig7:596172..596253Fucus serratus maleCDSF-serratus_M_contig7 596173..596253 -
1622932140.5500698-CDS-F-serratus_M_contig7:596587..5966701622932140.5500698-CDS-F-serratus_M_contig7:596587..596670Fucus serratus maleCDSF-serratus_M_contig7 596588..596670 -
1690964167.2826843-CDS-F-serratus_M_contig7:596587..5966701690964167.2826843-CDS-F-serratus_M_contig7:596587..596670Fucus serratus maleCDSF-serratus_M_contig7 596588..596670 -
1622932140.570657-CDS-F-serratus_M_contig7:597626..5979801622932140.570657-CDS-F-serratus_M_contig7:597626..597980Fucus serratus maleCDSF-serratus_M_contig7 597627..597980 -
1690964167.2927172-CDS-F-serratus_M_contig7:597626..5979801690964167.2927172-CDS-F-serratus_M_contig7:597626..597980Fucus serratus maleCDSF-serratus_M_contig7 597627..597980 -
1622932140.5867167-CDS-F-serratus_M_contig7:598263..5983771622932140.5867167-CDS-F-serratus_M_contig7:598263..598377Fucus serratus maleCDSF-serratus_M_contig7 598264..598377 -
1690964167.3030741-CDS-F-serratus_M_contig7:598263..5983771690964167.3030741-CDS-F-serratus_M_contig7:598263..598377Fucus serratus maleCDSF-serratus_M_contig7 598264..598377 -
1622932140.599459-CDS-F-serratus_M_contig7:601185..6013621622932140.599459-CDS-F-serratus_M_contig7:601185..601362Fucus serratus maleCDSF-serratus_M_contig7 601186..601362 -
1690964167.3204465-CDS-F-serratus_M_contig7:601185..6013621690964167.3204465-CDS-F-serratus_M_contig7:601185..601362Fucus serratus maleCDSF-serratus_M_contig7 601186..601362 -
1622932140.616619-CDS-F-serratus_M_contig7:601608..6017821622932140.616619-CDS-F-serratus_M_contig7:601608..601782Fucus serratus maleCDSF-serratus_M_contig7 601609..601782 -
1690964167.33936-CDS-F-serratus_M_contig7:601608..6017821690964167.33936-CDS-F-serratus_M_contig7:601608..601782Fucus serratus maleCDSF-serratus_M_contig7 601609..601782 -
1622932140.6298938-CDS-F-serratus_M_contig7:603132..6032431622932140.6298938-CDS-F-serratus_M_contig7:603132..603243Fucus serratus maleCDSF-serratus_M_contig7 603133..603243 -
1690964167.3518443-CDS-F-serratus_M_contig7:603132..6032431690964167.3518443-CDS-F-serratus_M_contig7:603132..603243Fucus serratus maleCDSF-serratus_M_contig7 603133..603243 -
1622932140.641531-CDS-F-serratus_M_contig7:603367..6034271622932140.641531-CDS-F-serratus_M_contig7:603367..603427Fucus serratus maleCDSF-serratus_M_contig7 603368..603427 -
1690964167.3612406-CDS-F-serratus_M_contig7:603367..6034271690964167.3612406-CDS-F-serratus_M_contig7:603367..603427Fucus serratus maleCDSF-serratus_M_contig7 603368..603427 -
1622932140.6554801-CDS-F-serratus_M_contig7:603664..6037931622932140.6554801-CDS-F-serratus_M_contig7:603664..603793Fucus serratus maleCDSF-serratus_M_contig7 603665..603793 -
1690964167.371879-CDS-F-serratus_M_contig7:603664..6037931690964167.371879-CDS-F-serratus_M_contig7:603664..603793Fucus serratus maleCDSF-serratus_M_contig7 603665..603793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7.18132.1

>prot_F-serratus_M_contig7.18132.1 ID=prot_F-serratus_M_contig7.18132.1|Name=mRNA_F-serratus_M_contig7.18132.1|organism=Fucus serratus male|type=polypeptide|length=475bp
MGIHGLTKLLSDEAPNCMKEVDLGSLTGRKVAIDASMAMYQFLIAVRSGG
EGQAQMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPDLKGGE
LAKRKEKRTKAEADLKTATEADEKSDVDKFSKRLVRVTSDHNDDCKALLR
LMGVPVLTAPSEAEAQCAALAREGVVYGAATEDMDALTFKTPKLLRRMTF
SGTQQPILEVDYTKLLQGLDLSHEKFVDLCILCGCDYTGSIKGIGPKKAL
ALIRQHGTIEEIVKHLNPAKYPLPDDWLEPSERAEKRKQGRQEAKARKEA
RAKEQAKEEAVETTELAKQEIVPDREVESPVGEDIIPSTKREREEENDED
CEEDMDDTPPMYRQARRLFLEPDVEPAGEIKLKWTDPDEAGLLKFLVEDK
GFNAERVASGIAKLKAARKNVSQKRMDSFFSVLPSPNAGTKPSKGKGAPG
AKGKTAGAKGKAAAAPLKGKGKRR*
back to top

mRNA from alignment at F-serratus_M_contig7:595648..603853-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7.18132.1 ID=mRNA_F-serratus_M_contig7.18132.1|Name=mRNA_F-serratus_M_contig7.18132.1|organism=Fucus serratus male|type=mRNA|length=8206bp|location=Sequence derived from alignment at F-serratus_M_contig7:595648..603853- (Fucus serratus male)
TCTCAGCTCTTCCCAGCATCTCTTCGCCACCTTCATACGCAACTATACTC
TTGGCTGATCATGGGTATCCATGGATTGACGAAGCTTCTTTCTGATGAGG
CGCCGAACTGCATGAAGGAAGTCGATCTTGGTTCCCTAACCGGACGTAAA
GTAGCTATAGATGCATCAATGGCGATGTACCAATTCCTGGTGAGCTGCCG
CCGCCGCAGGATCCATCCTCAACGGTCGCTGTGGGATACTCCGGAATTTA
TCACGCTCGTGTATCAAATAGGTTTTGAGCGTATAGTTGGATGCCCATTC
GATTTCTCCGGCGCCCGGTATGGTTTCCGCGCCTTGGGTTTTTCTGCTGT
AATTAAGCTCGCTTTTATTTGCAAGTAAATGAGTTTTTGAAATTTTTAAA
AATATAAAATCATCTCGGTCTCGCAGATCGCTGTACGCTCAGGAGGGGAA
GGTCAAGCGCAAATGCTCACCAACGAGGCTGGGGAGGTGAGCTTTCGTGG
CTTGAGCGGCCGACGAAGGTATAGCGAAGTGAGAAAAATGTTCCCTACAT
GCACCAGGTTACTGCTGCCGTCTCCACCATTTTCATGTATTTTGGCGGTT
CGACTCTCAGGTGACAAGCCATATTCAGGGCATGTTCAACCGAACAATCC
GGATGCTGTCCAAGGGTGTAAAGCCCTGCTATATCTTTGATGGGAAGCCT
CCTGATCTTAAGGGAGGAGAAGTGAGTTACGGTATGTTGCAATTTGTCGA
GTTCAAAATGTCTCTAATGTTCGTTGTACAGTAGTCTGATAAAAAAGCCG
GGGTATCCAGATTCAGGCTAAAAGGCTGGGGAATGAGCGGGCTGACGCGG
GACGGGACAACCAAATTCTCAGGCGCGAACGGGGACAGGGATTACATCAG
TTAACAGAGTATCTTCGAAAAACATGTTGAAAAGAGAAAGCAAGGCTCAA
CTACTTTTTATGGAAACTGAGCTTGATAACCTTGACGAGGTGGATGGGTG
TTTACGATCGCTTTTTCGTGTACAACTTTCGTGGTTTTTCGAAACTCGCT
TCCACCGAAACAAAACAAAAGAAAGTGCTTTCGAAGCCTTTTTTCGAGAT
ACCCCAATGGCTTTGTAATTAATAACTTTTGTAATGTAAGATCACTACTA
CCATCTGTGAGGGACTAACCCTACATTTTCTGTGGGTTATTCTTAATGTT
TTTCTCGTGTCCCTGCATGGCGATTAATGTAAATGTACAGTATAACGGTG
GGCTTCTCCCCGACATTATACTGTTGACCCAATGTTACTTGCATCGGGGA
ACCTGTTTAAATACCATGAAGATATTTTGTACTTACAGCCTTTGATCCCA
CCTGAACGTTTTGACATTTTTTCCCCTCTAACCGGGGGATGCTCAAAAGG
TCTAGGTGCTGTTCTGATTTTCTTTAAAAACAAATTCCGTTTTTCCTCTC
AGCATGTGAAGTAAATAGTTCTCAACTAGAGTCAGGATGTATGGTCATCA
CACATGGCAGAGGATTTATCAACCGGGTAAGGTTGCCAATCCTGTTCGTG
GTCAGCTGAACAGGGAAGATAAACATTCCTCTGTCCCCGAAGCGAAGTAC
AGTACAGTGTGATGATAAACATGCATCAGGAAACCTACTAAGGTTCAAGC
TCGAAGCTTTATGTAAGGGAAAGTGTTTTTCTGGAGTGGAGCCTGCTTTT
CACATTCAACCCGTTTTCTCAGGAGACCGTGCTTGTCACGTACTACGAGT
ACTACACTTTTAAAGTCGTAACCCTGGAAGCGCTTAAATAGAAATGTAAA
CCTGATTCTCGAAACTCGAGTTTTGTATTTTTCGAGTGTCTGGAAAATCC
CAGAACCCTGTACCGGTGCAGTATGCCTTGAAGCATCATTACTATTCTTA
GTACGCTCTCCTGCGGCCCTTCAAACGCCCGGAAATTACGAACTGAATGC
TTTGATTTTGAGACGTTCGTGGATTGTAAGTCAGAAAACGCCCACGACTG
GAAATCCAAACGAAGTGTACGAGTGTCTTTGCGAACGGCTTCGATCCACC
GAACCACGCCCGGTCCTATAGCTAGCGAAGCGGAAGGAAAAACGCACGAA
GGCTGAAGCGGATCTCAAGACCGCCACTGAGGCGGACGAGAAAAGTGACG
TGGACAAGTTCTCGAAGCGCTTGGTCAGGGTCACAAGTGACCACAACGAC
GATTGCAAGGCACTGCTACGTCTAATGGGAGTGCCGGTTTTGACAGTGAG
TGCGCTATTACAACAGGACCCCATCTGTTAAACTTTTAAAATTTGAATAT
ATGTATCTGCTAGGCACATAAGTGAACGAGGTAAATACTACTTGTATTTT
ATTCACATGTACTAGCCGCTGTGTCCAATGCACCCTCAGGAGCTATCTTG
CGCTTCGATGACAACAAAAAACATCGTGATAAGTTTCATGGCACCCTAGC
GCACCTGAATCAACGGTTGTCAAACTATGCGTTCGGGGCAGGCTCCATCG
GAAGCTGAGGCGCAGTGTGCTGCTTTGGCTCGCGAGGGAGTTGTGTACGG
CGCCGCTACAGAGGATATGGACGCCCTCACATTCAAGACCCCCAAGTTAT
TGCGGCGCATGACGTTCTCTGGTACGCAACAGCCCATCCTGGAGGTGGAC
TACACGAAATTGCTACAGGTACTGTCCAGTGATTTTTCAATCCTCACACG
TATCCACTTGAAAACAAGTGCGTGTGTGTATGGTCATCATTGTGGTTGCC
AATCTTGCACAATCTTGATAACATCGGACAACTCAACTCAAGTTGACTCG
AGTTAACTCGTTTTCACATAACTCAGCGGTGAGTTATAAAACATAACTGA
GTGGTGGTACTTTCCACCTGGGTGAGTTATACAACACAACTGAGTGGTAA
ATAGTACTTTCCATTTGGGTGATTTATACAACACAACTGAGTGGTAGTAC
TTTCCACCTGGGTGAGTTATAAAATATAACTTGAGTGCTGGTACTTCCAG
CATGGTTAGTTATAATTATAACTGAGTGCAGATAATTGCTGAGTGCGCAG
GGTGAGTTTTTCTAAGGATGAAAAATCAGACCACACCCACACCTTTCTGA
GCATCCCCCACAAGGTGTGTCCTAATTTAACTGCTTGTTGCCCACGGGTG
AGTTAACTCGAGTTACCTCATTTGCATAACTCAGCGGTGAGTTAAGATAG
GGTAGCTATCGCTATACGCTCGCTAAAGGATAGTTTGGTAACTATCGTCA
GCTTAACACAGGTGTTGGTGCAATGTGTCGTTGGTGTTTGGCTTGTTGAA
CTGGCGTTGTCCTCAGGACTGTACAAAAAAGCCCTGAATACCTCTGATTT
TTTCGGTTTTCGGTTTTTCGGTTTTTTACTTTGAATATGGTATGAAGCAT
ACAGTGGACAGGAACAAAGTTTGAAGTTTCACACTTGATAATATTTTCGT
AGACTTCGGACAGTCTGGTTTGGTCTATTGGACTAGTCATCAAAATAATC
AAGATAATGACGTACTTCGTACTATTTTTGGTGCGTACCGTGAACGAAAA
AGTCAACCCGCTAGGCGTACACTGTAGTATACGGCACATATTTATTGTAC
TACAACCGATAACTGGCCGGTAACTGATCAAGCAAAGCAACTAAATAAAT
ACCTGGTAAATCGACACAAAATTCGACTTATTGTATTCGAGTACAAAATG
TCCCTATATATAGTTGTGTACGAGATAAACCTTTGATCAGCCTCTACAGC
ATTGTGCCATGGTACACGATCAAAACTCCCTAGCTCGATGAGGCCCTCGC
AGGCACTGGCGGTGCCTGGAGACTTCTAGGATGTGGTCTGTGCTTTCTTC
TCGCCACGAGAAACGTGCCCGACGGACCCATCTCCTGTAGGAGGACCGGG
AAGAGAACTGTCTACCGAACAGGCTGACAGCCTTCACGAGCCCTACTTGC
CATGAGTCCCACAACAACAGTAGCCAGCTTCTAGCAAGGGATTCAGGCTG
AGGCTTCTTTGTTGTGTCGGAGGCTAAGGCTTTGCGATATGTAGTCGGGC
CTAGGAGTATACAGAAGGTGCCTGTGCTTTCTGCTCGCCACGAGAAACGT
GCCCAGCGGACTCATCTCCTGTACTGTAGGAACCCCAAGGAGAGAACTGT
CTGCCGAACACGCTGACAACCTTGACGAGCCCTGCTCGCCATGAGTCACA
ACAGGAGTCAGTTTCTAGCTGGTAGGATGCAGGCTAAGGCTTTGTTGTGT
CGGAGGCTAAGGCTTTGTTTTTGGGGGTCTGAGTGAGAAGGGGTCTTTGC
GATATATTATAGTATCCTAGCCCCGTATCAAGTACTGGTAGTTTGCAAAA
CCTACTTTTTGGTGTACTTGCATGGCCATTAAAGTAAAGTAATGAGAGTG
AAGTATAACGAACGGTGGTTAGCTCCACGATACCATACTGTTAACCCTAT
GCTACTAACATTGAGAATGTTGAACCGTTTGAATCCCATGAAGAGTTTTA
AAACAAAAATCTGAACGTATCGAAACCTTTTGACGGAGTAACATTACGAA
AAGGAACATACGGCACATTTCATGATTGGTCAAAGTGCCCCGTATTTTGA
TACACCCGAGCTCAAATTGATACAGCACACAGATTAAAAGCTCGCTAAAC
GCTCGCAACAAAACTACTCTCACAGGTGGAAGTAAGTACATTCGCCATCT
ACGTACTACGTATAGTCCTTTTGTATACGTACGTCATGCACAAATGTCGC
ACGGGGTAACATTACGAAAAGGAACATATTTTGATACACCCGAGCTCAAA
TTGATACAGCACACAGATTAGAAGCTCGCTAAACGCTCGCAATAATTATA
ACTGAGTGCTGGTACTTCCAGCAGGGCGAGTTATAATTATAACTGAGTGC
AGGTACTTCCAGCCGGGTGAGTTATAATTATAACTGAGTGCAGGCACTTC
CAGCAAGGTGAGTTATAAAATATAACTTGAGTCTGATACTTTCAACAGGG
TGAGTTATACAACATAACTGAGTGGTAGTACTTTGTGAGTTATACAACAC
AACTGAGTGGTGGTACTTCTACTCACGTGAGTTAAACAACATAACTGAGT
GGTAGTACTTTCCACTCGGGTGAGTTATACAACACAACTGAGTGGTAGTA
CTTTCCACTCGGGTGAGTTATACAACACAACTGAGTGGTGGTACTTCCAC
TCACGTGAGTTATACAACACAACTGAGTTAACTCATGAGTTGTCCGACGT
GTGCAATCTTGCTCGTGGTTTGCTGAAAAGGGAAAACTATTTTTTCCCTG
TCTCCGTGTACGCATGAAGATGTAGCGTCGATAGCACAGGTCAAAATAGT
CTATCTCGTAAGGTAGGTTCGGCTGTGCCGTCCCGTGGCAGCCCGCCCAT
TCTTCACACCCAGGCTGAATCTATAAACAACTCTATCACCTCTACTCATC
CCCGACCTGTTACACTTTGTTTGCAGGGATTAGATCTCTCGCATGAGAAA
TTCGTCGATCTTTGTATCCTCTGCGGATGTGACTACACGGGGTCGATCAA
GGGAATAGGTCCAAAGAAGGCGTTGGCTCTCATACGTCAGGTTTGTATTG
TTCGTTTTTCGTCCTGTCCCAAATAAAACATATTTTGAGTCCAATGACAC
CAACCGCCTGCTTGTAGACAGGGTAAAGAACGCATATAGCTATTTCAGCT
GTCAGGATGGAGAGACGTCAAGTGCGTTGACTCCGAGAAGCGTTTCGTTC
ATTCCGAGAAGCGTTTCGTAGTGATTCTTTCAGGGCACAGTCAGGATAGG
ATGTCTATCGTAAGTGGTGCATTGACATCAATCTACGTGCGTCCGGCACC
TCTCCCTAATGTCCTCATTGCAGCATGGCACCATCGAGGAGATCGTCAAG
CACCTCAATCCTGCAAAGTACCCTCTCCCAGACGACTGGCTCGAACCTTC
GGAGAGAGCCGAGAAGCGCAAGCAGGGCAGACAGGAGGCGAAAGCTAGGA
AGGAGGCAAGGGCAAAGGAACAGGCTAAAGAAGAAGCGGTCGAGACGACC
GAACTCGCCAAACAGGAAATAGTGCCTGATCGAGAGGTGGAAAGCCCTGT
CGGAGAAGACATCATACCCTCAACAAAACGTGAACGAGAGGAAGAGAATG
ATGAGGATTGTGAAGAGGACATGGATGACACGCCTCCGATGTACCGTCAA
GCTAGAAGACTCTTCCTCGAACCTGATGTGAGGAGGATCCTCGGGCGCTG
ACAAATTGCGGTTTCTGATATCGGACACTTTTCTCCTAGATTTCATCACC
TTTGACATGTGCCAATTTTGTCGGTATAGTTAACCAGTAAAATTATATTT
CGTCTTCCTAGCGATAGCGCTGGATTTGGAGAGGCGACATAACCTATGAT
CGTGATTCTGCGCTACTGGTAGTAATTACAGAGATCTTAAGACCCTGTTG
GAATTCTGTTTTGAATGCAGCGTAGCTTGTTTTCGCATAGCCTACGTGTA
CCAATATTACCCAACGTTGCTGCAAAAGGATCATGAACACACCAGACGAT
ATACGAAGTTTATTACTCGAGGATGCCGTAGCGACGCAAAAATTTAGCTG
TTCCCGAGCTATGAGACCTGAGCAGGATTTTGTGGCATTTTCGGATCGCT
GATGCTCACCTGTTGGCATTATTGCCTCTTTTGAGAGACCGGTATTAACA
TTTAATAGCCGGTCGCCCCGGTGGCTCAGTAGGTACCTCGGTACCTCGCA
ACCTTCTGACACGTTGGGACGTGAGTTCGATCCCGGCAAACGGGATTTTT
CTCGCTAAAAACTAAAAAAACTAAATAAAAACGTCCAACGGGTGGAGAAC
GATTAATTCGTTGATACACAAAATTCGACTTCACGGTCGACGAGGGAAAG
GAATGGCTGAATCCTTCTCGCGATAAAAATTAAGGCACGCACCGCAGAAG
GAAGTTGGATGAGAAATCCTGTGTGACCTTCCTCCTGTACGACCCCGGCT
GGTACGTCCAACGAACTTGATGTCCAGAATGGATGGGAAGAAAACACACA
CACAGTTAGAATAGGAGTTGATATGTCTTTCGTTTGACGTATTTTGTGTT
AATGTCAGTCCTTCAACTGATAGGACAACCGCTCGGAAAAGGAGTTACCA
ACTATTCGTGCTGTTATGTCGAACTTCTGTCAGGTGGAACCTGCGGGCGA
GATCAAGCTTAAATGGACCGATCCTGATGAAGCTGGCCTCTTGAAATTTC
TCGTGGAGGACAAGGGGTACGTAATTATTACCATATTTATTTGCGTTTTC
GAAACACATTGACGGAACATCATAAAATATTATGACTGCCTTTCACAATC
ACTAATATTACAAATATGAGTATGTTCTATGTTTCCCTGAGTCCGTGAAC
GCGCCAAGAGTCATTTGAGCTAAGGGATACGTGATTTGTTTTTTTGGCGT
TTTGGAAACACATGCAACACTATGAAATATTATAACTGCCGTTCACAATC
GCTTTCAGTACATATATTGAGTATGTTATGTGTTTCCCTAAGTCCGTGAA
CGTGCCAAGAAGTCATTTGAGCTAATTTACTCCTGTCTGGCTTGTGGCAG
ATTCAACGCCGAGCGTGTGGCATCGGGCATCGCCAAGCTTAAGGCCGCGC
GAAAGAATGTGTCGCAGAAGCGAATGGACAGGTACTGCATTTGCCTGCTA
AGAGCATAAGGTTGTTCTGTGCATCTTGTCTCGTCAGTATCCCATCCCCG
GATCGTTTATAACGCGAGCATGTCATGCCCACCCTGTTAACGTCTCTACA
GCTTCTTCAGCGTACTCCCTAGTCCAAACGCCGGGACGAAGCCCTCGAAG
GGAAAGGGTGCCCCCGGAGCGAAGGGAAAGACGGCCGGGGCTAAGGGAAA
GGCTGCAGCCGCTCCACTGAAGGGCAAGGGTAAAAGGCGATAAAATGGAG
AATCCAAAAGCCATACTAACTTGATTGGACAACGCACACTAGCGGTCGAC
TAAGACCTTGTAATGGTGGAGCTCTACGAGGTAGACCTGAATGGTTTACA
CAATTAACACTTCTAAATGTTATGAGTTCCGTTTTTCTAAATGAAAATAC
ACCACTCCCTACAATGCGATTAATTTACGCTCGAAGACTTACTTGAAGAA
AATCCCCAAGCCTGTGATAACGATGGGATGCTGGACATCAACTTAGACTC
TTCCGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig7:595648..603853-

>mRNA_F-serratus_M_contig7.18132.1 ID=mRNA_F-serratus_M_contig7.18132.1|Name=mRNA_F-serratus_M_contig7.18132.1|organism=Fucus serratus male|type=CDS|length=2850bp|location=Sequence derived from alignment at F-serratus_M_contig7:595648..603853- (Fucus serratus male)
ATGGGTATCCATGGATTGACGAAGCTTCTTTCTGATGAGGCGCCGAACTG
CATGAAGGAAGTCGATCTTGGTTCCCTAACCGGACGTAAAGTAGCTATAG
ATGCATCAATGGCGATGTACCAATTCCTGATGGGTATCCATGGATTGACG
AAGCTTCTTTCTGATGAGGCGCCGAACTGCATGAAGGAAGTCGATCTTGG
TTCCCTAACCGGACGTAAAGTAGCTATAGATGCATCAATGGCGATGTACC
AATTCCTGATCGCTGTACGCTCAGGAGGGGAAGGTCAAGCGCAAATGCTC
ACCAACGAGGCTGGGGAGATCGCTGTACGCTCAGGAGGGGAAGGTCAAGC
GCAAATGCTCACCAACGAGGCTGGGGAGGTGACAAGCCATATTCAGGGCA
TGTTCAACCGAACAATCCGGATGCTGTCCAAGGGTGTAAAGCCCTGCTAT
ATCTTTGATGGGAAGCCTCCTGATCTTAAGGGAGGAGAAGTGACAAGCCA
TATTCAGGGCATGTTCAACCGAACAATCCGGATGCTGTCCAAGGGTGTAA
AGCCCTGCTATATCTTTGATGGGAAGCCTCCTGATCTTAAGGGAGGAGAA
CTAGCGAAGCGGAAGGAAAAACGCACGAAGGCTGAAGCGGATCTCAAGAC
CGCCACTGAGGCGGACGAGAAAAGTGACGTGGACAAGTTCTCGAAGCGCT
TGGTCAGGGTCACAAGTGACCACAACGACGATTGCAAGGCACTGCTACGT
CTAATGGGAGTGCCGGTTTTGACACTAGCGAAGCGGAAGGAAAAACGCAC
GAAGGCTGAAGCGGATCTCAAGACCGCCACTGAGGCGGACGAGAAAAGTG
ACGTGGACAAGTTCTCGAAGCGCTTGGTCAGGGTCACAAGTGACCACAAC
GACGATTGCAAGGCACTGCTACGTCTAATGGGAGTGCCGGTTTTGACAGC
TCCATCGGAAGCTGAGGCGCAGTGTGCTGCTTTGGCTCGCGAGGGAGTTG
TGTACGGCGCCGCTACAGAGGATATGGACGCCCTCACATTCAAGACCCCC
AAGTTATTGCGGCGCATGACGTTCTCTGGTACGCAACAGCCCATCCTGGA
GGTGGACTACACGAAATTGCTACAGGCTCCATCGGAAGCTGAGGCGCAGT
GTGCTGCTTTGGCTCGCGAGGGAGTTGTGTACGGCGCCGCTACAGAGGAT
ATGGACGCCCTCACATTCAAGACCCCCAAGTTATTGCGGCGCATGACGTT
CTCTGGTACGCAACAGCCCATCCTGGAGGTGGACTACACGAAATTGCTAC
AGGGATTAGATCTCTCGCATGAGAAATTCGTCGATCTTTGTATCCTCTGC
GGATGTGACTACACGGGGTCGATCAAGGGAATAGGTCCAAAGAAGGCGTT
GGCTCTCATACGTCAGGGATTAGATCTCTCGCATGAGAAATTCGTCGATC
TTTGTATCCTCTGCGGATGTGACTACACGGGGTCGATCAAGGGAATAGGT
CCAAAGAAGGCGTTGGCTCTCATACGTCAGCATGGCACCATCGAGGAGAT
CGTCAAGCACCTCAATCCTGCAAAGTACCCTCTCCCAGACGACTGGCTCG
AACCTTCGGAGAGAGCCGAGAAGCGCAAGCAGGGCAGACAGGAGGCGAAA
GCTAGGAAGGAGGCAAGGGCAAAGGAACAGGCTAAAGAAGAAGCGGTCGA
GACGACCGAACTCGCCAAACAGGAAATAGTGCCTGATCGAGAGGTGGAAA
GCCCTGTCGGAGAAGACATCATACCCTCAACAAAACGTGAACGAGAGGAA
GAGAATGATGAGGATTGTGAAGAGGACATGGATGACACGCCTCCGATGTA
CCGTCAAGCTAGAAGACTCTTCCTCGAACCTGATCATGGCACCATCGAGG
AGATCGTCAAGCACCTCAATCCTGCAAAGTACCCTCTCCCAGACGACTGG
CTCGAACCTTCGGAGAGAGCCGAGAAGCGCAAGCAGGGCAGACAGGAGGC
GAAAGCTAGGAAGGAGGCAAGGGCAAAGGAACAGGCTAAAGAAGAAGCGG
TCGAGACGACCGAACTCGCCAAACAGGAAATAGTGCCTGATCGAGAGGTG
GAAAGCCCTGTCGGAGAAGACATCATACCCTCAACAAAACGTGAACGAGA
GGAAGAGAATGATGAGGATTGTGAAGAGGACATGGATGACACGCCTCCGA
TGTACCGTCAAGCTAGAAGACTCTTCCTCGAACCTGATGTGGAACCTGCG
GGCGAGATCAAGCTTAAATGGACCGATCCTGATGAAGCTGGCCTCTTGAA
ATTTCTCGTGGAGGACAAGGGGTGGAACCTGCGGGCGAGATCAAGCTTAA
ATGGACCGATCCTGATGAAGCTGGCCTCTTGAAATTTCTCGTGGAGGACA
AGGGATTCAACGCCGAGCGTGTGGCATCGGGCATCGCCAAGCTTAAGGCC
GCGCGAAAGAATGTGTCGCAGAAGCGAATGGACAGATTCAACGCCGAGCG
TGTGGCATCGGGCATCGCCAAGCTTAAGGCCGCGCGAAAGAATGTGTCGC
AGAAGCGAATGGACAGCTTCTTCAGCGTACTCCCTAGTCCAAACGCCGGG
ACGAAGCCCTCGAAGGGAAAGGGTGCCCCCGGAGCGAAGGGAAAGACGGC
CGGGGCTAAGGGAAAGGCTGCAGCCGCTCCACTGAAGGGCAAGGGTAAAA
GGCGATAACTTCTTCAGCGTACTCCCTAGTCCAAACGCCGGGACGAAGCC
CTCGAAGGGAAAGGGTGCCCCCGGAGCGAAGGGAAAGACGGCCGGGGCTA
AGGGAAAGGCTGCAGCCGCTCCACTGAAGGGCAAGGGTAAAAGGCGATAA
back to top