mRNA_F-serratus_M_contig7.18115.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7.18115.1
Unique NamemRNA_F-serratus_M_contig7.18115.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7.18115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7contigF-serratus_M_contig7:72980..76777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size331
Cds size330
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7.18115.1prot_F-serratus_M_contig7.18115.1Fucus serratus malepolypeptideF-serratus_M_contig7 72981..76777 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932133.916706-UTR-F-serratus_M_contig7:72979..729801622932133.916706-UTR-F-serratus_M_contig7:72979..72980Fucus serratus maleUTRF-serratus_M_contig7 72980..72980 -
1690964164.3106117-UTR-F-serratus_M_contig7:72979..729801690964164.3106117-UTR-F-serratus_M_contig7:72979..72980Fucus serratus maleUTRF-serratus_M_contig7 72980..72980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932133.9396615-CDS-F-serratus_M_contig7:72980..731221622932133.9396615-CDS-F-serratus_M_contig7:72980..73122Fucus serratus maleCDSF-serratus_M_contig7 72981..73122 -
1690964164.32248-CDS-F-serratus_M_contig7:72980..731221690964164.32248-CDS-F-serratus_M_contig7:72980..73122Fucus serratus maleCDSF-serratus_M_contig7 72981..73122 -
1622932133.9588106-CDS-F-serratus_M_contig7:76589..767771622932133.9588106-CDS-F-serratus_M_contig7:76589..76777Fucus serratus maleCDSF-serratus_M_contig7 76590..76777 -
1690964164.3335872-CDS-F-serratus_M_contig7:76589..767771690964164.3335872-CDS-F-serratus_M_contig7:76589..76777Fucus serratus maleCDSF-serratus_M_contig7 76590..76777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7.18115.1

>prot_F-serratus_M_contig7.18115.1 ID=prot_F-serratus_M_contig7.18115.1|Name=mRNA_F-serratus_M_contig7.18115.1|organism=Fucus serratus male|type=polypeptide|length=110bp
VAIRSLVLLLHGFGTSSLSRSPCARGDALHRGDPALVPGDCLAWAMGSRR
TLGGFCFLFLSWKDLSSKLGHRFAGRSSTNTREYYSSFWCLINFSLSTGD
SQALRILRP*
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mRNA from alignment at F-serratus_M_contig7:72980..76777-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7.18115.1 ID=mRNA_F-serratus_M_contig7.18115.1|Name=mRNA_F-serratus_M_contig7.18115.1|organism=Fucus serratus male|type=mRNA|length=3798bp|location=Sequence derived from alignment at F-serratus_M_contig7:72980..76777- (Fucus serratus male)
GTTGCGATCCGTTCGCTTGTCTTGTTACTTCATGGCTTCGGCACGTCCAG
CCTTAGCCGCTCCCCTTGCGCTCGTGGAGATGCGCTCCATCGTGGAGATC
CCGCTCTCGTCCCGGGAGACTGTCTTGCATGGGCGATGGGATCCCGCCGC
ACTTTGGGTGGTTTCTGTTTTTTATTTTTATCATGGAAGCCAACCCTGGT
TGTGGATGAGGGCGGCAATATGATGGCCAAACGCCCAGACGGGACGAGGG
TAAGACGAATGCCGAAGCAAGCTATTATTATTAATACTGTAGTGTAGACT
ACGATAGCAAGCAACCTCAAGATATCAGTCGATCACTCACGCAATCAATT
GCACCTGGCTTTTTGTATTGTTTCTAAGATATGCTGTTCTGAAGTATAAA
ACCAGTATAAGCCAGCATCATCCGGAATCGGAGAGGGCTTGGTATTGTAG
TAATTGCGGCTGCAATTACTACAATACCAAGCAAGGCAATGTACCTGTAG
GGGAGGGGAGGGGGTGTTTTTACCGGTTGACGGGTTGATGGGTTGACGAA
CTGCCACCCTCTTGAAGAGGATTGATTGAATAACTACATTACCAGGTACT
GGTATAAATACAAGCAACACTTGGTACTGTACAAGTACTATCAATGTTAA
TAGATCTACAGTTGCATTAATGTTGATAGTTGTGGCAGGCTTGCTTCATC
TGCTGTATACAGTGCAGTAGCTATAGAGTCTATATATAGTGGTAGTGTAG
TAGCGATTCCCTACGAATGAAGATATTCATCAACAGTAGGAAACTGGTTG
ATTCTGATTCCGCTGCGCTCGCGTCGCATGCTCCTTCTTACGCTGGACAT
GTCAGGTTACTCTCGGGGGGGTGCGACGGGAAGGAAGCATGGCGGCTTCC
TTTCCAGGGTATTTGGTGCCCCCGCCCAGGGTACCATCGTCGCGCGGATC
GACGGTGTGCGCCATCGTGGAGGGCACGTAGGGTTTACCGAAGGCGGTGA
CCTCTACGTCGCAAATTCCGCCGGGACCATGGTGTGGTCCCTCGACGAGG
AGGTGGAGCGGGAGGGGGAGGGGGGGCAGAAGAGGGGCGGGGCTGGAGGG
GCGGGGCATGATAATGATGTATTATTAGTATATCAAAACGGCCCACTAGT
TGGTGTTTTGTTACCGTCCCGGCACTATATCCCGCAGCACACTGTAATAT
AGTGTCGTGAGTGATTGCATGTTGGCATGGTACTGTACTATCGCTACAGT
GCACGTGTACAGTATTGTACCTGGTGTTTATGATCGTACTTGTAGTATTT
AATAGTTGAAAAAACTACAAGAAACACACTTGTACTGTACTTGTAGAGCC
TAGAGCTACAAGTATTTTTTTTGGGAAGAAAAAAAAAGGATGTCGTCGGT
AACTGTGACTGACTGTGGCGGGCGTGTACGGGAAGGAGAGTGCGGTCTTG
TATTGGACTATTATTGTTACTCCTGCAGTCTACAGTAGTCAGGATGTGCT
ATATATAGCTTTATTTGATCTATTTGATCTATACATGAGGGGGAAACGCC
TGGGTATGGCATAGTATACTGTACCCCTGGTTTCCTTAGTATGGACATTA
ATAAGTATTATAGTACGATTGTTTGCTTCGTACTGGTAAGAGTAACAGGA
AAGGATTGTTTTCGTTTTCGCTGAAGCGGGTGGTTGTCTATGGAGGGCCA
GGGTGCGGCACGACCCCGGGTATATGGTATATGGTATATGACATGGTTAC
GAATACCGTACAAGTACGTACCAGGTACTGTACTTGCTTTTTAAATATAT
GGTAGTGTGTATTACGCACCACCTGTCGTTGGGTTTTTGGTTTTTGATGC
TTGCCCATATAATAATTATATGGTATATGAGATGGTTACGAATACCGTAC
GAGTGTATTTTTTGTGTTTTTTCCCATTCATTCTGGACACTGATAGTCGG
TATGTGGATGGCCAACCGATGGCTCATTCCTCGAGGTCGGTGGCGCATCC
TTCGTGAACTCGTAAAAATAAAGGATTTCGGTGGGTTATCGATGGGTACA
TACATGCCTATTGAATTTGGGATTTTGAGGAGCCCCTGAATCTGGTGGGT
GAGGTTGACGATGGCCAACTGGTGGTCCACTTCTGGCGCCAGGAGTACGA
CTTTTGGTTCTCGTCCCTGAAGGCCTGCCTCCAGAAGGTCGCATCCTTCG
CCGTGTGTGTTGTGTTGTGTGATCCTTTGCGAACTTGCTGGACTGTCGTC
GCATCGCTTTGATTGGTACTTCGTACATGCCTATTGAAATTAAGGATTTT
GATTGGTACATGCCTATTGAAATCTGTCCCGCTCAGATTTGAACTCGCCG
GCTATGACCGTGCGTCCAAATAGCATATTGAGAAACAACAAGGAACGGCC
CTGGGCTCCGAGATAATTTCCTTGGTAGCGTGCCACATGACCTACATGCC
TATTGAAATATGTCCCGCTCAGATTTGAACTCGCCGGCTATGACCGTGTG
TCCAAATAGTATAGTGAGAAACATCAAGGAACGGTCCTGGGCTCCGAGAT
AATTTCCTTGGTATCAGGCCGATAGCCCTGAGTTATAGGATCATGTATGT
ACCTTGCAGAGCTGCCATGGCGCCGTGGTTGCTCGTTATCCGAGGTGCCC
CAAGAGAGCTCTTCCTTCTCTCTGTTTTCTTTAATAAAGCTCCCTTTGAC
CTCCCACCCGTTGGCTAGTAGTTACAGTCGTGTGACGATTTCATCAGTAA
TTTGTGCCCAAAATATATTTTTTTCGGCCCAAGTGTGTGGGGCCCCGTTA
AAGACACATTTCCCGAAGGTGTGGATGCTCGGAAGGGTTAGATGCGTCCA
CATTTTCCTATGAACAGATAAGATACCAAAATACTGCAACCCCATCAATC
TATTACCTTGTATTAGTTAGAGGGGGAGCTGTGAGCTTTGGCGGTGTTTA
TATCGTCCAGGCTCTATGCCTACAACAGTTCTGCTGTGTTTTTGTGTTTG
CTTCCCATCTATTCTGGACGTCAATGGACGTACCAGCCGGGGTCACACAG
GAGGAAGGTCACACAGGATTTCTCATCCACCTTCCTTCTGCGGTGCGTGC
CTTAATTTTTATCGCGAGAAGGATTCAGCCATTCCTTTCCCTCGTCGACC
GTGAAGTCGAATTTTGTGTACTAACGAATTAATCGTTCTCCACCCGTTGG
GCATTTTTTTTTAGTTTTTTAGTTTTTAGTGAGAAAAATCCCGTTTGCCG
GGATCGAACTCACGTCTCAACGTGTCAGAGGGTTACGAGGTACCTCTGAG
CTACCGGGGCGACCGGTACAGGTAGTAGTATTAATATTAATAGTAGTGAT
GCTTAGGTAAATATTGAAGGTTGCTTTCGTACTTCATGATCTGGTGTAAA
GCTAGATGTAGTGTCACTCATCCTCAGTCATTCACCTCGGCCTGCGATAG
CTCCGGACAGGATACTGCAATTATTTATGTACAGCAGGATGTGTGTGTTT
TCTTCCCATCCATTCTGGACATCAAGTTGGACGTATACGGCTACAATATT
ACATTACTACCAGGTACTAGTCTATATATCTGGTACCAGGTAAAGTCGGT
TCAAACGCTGGAAGAAGGAAATAAGTAAAAAGAGGATAATACTGAATACT
GGTAGAGACTTATCTTCGAAACTTGGGCACAGGTTCGCTGGCAGATCTTC
TACTAATACGCGGGAATATTACTCTTCGTTTTGGTGCCTTATAAATTTTT
CGCTCTCGACGGGAGACTCGCAAGCTCTTAGGATTCTTAGGCCATGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7:72980..76777-

>mRNA_F-serratus_M_contig7.18115.1 ID=mRNA_F-serratus_M_contig7.18115.1|Name=mRNA_F-serratus_M_contig7.18115.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig7:72980..76777- (Fucus serratus male)
GTTGCGATCCGTTCGCTTGTCTTGTTACTTCATGGCTTCGGCACGTCCAG
CCTTAGCCGCTCCCCTTGCGCTCGTGGAGATGCGCTCCATCGTGGAGATC
CCGCTCTCGTCCCGGGAGACTGTCTTGCATGGGCGATGGGATCCCGCCGC
ACTTTGGGTGGTTTCTGTTTTTTATTTTTATCATGGAAGTTGCGATCCGT
TCGCTTGTCTTGTTACTTCATGGCTTCGGCACGTCCAGCCTTAGCCGCTC
CCCTTGCGCTCGTGGAGATGCGCTCCATCGTGGAGATCCCGCTCTCGTCC
CGGGAGACTGTCTTGCATGGGCGATGGGATCCCGCCGCACTTTGGGTGGT
TTCTGTTTTTTATTTTTATCATGGAAAGACTTATCTTCGAAACTTGGGCA
CAGGTTCGCTGGCAGATCTTCTACTAATACGCGGGAATATTACTCTTCGT
TTTGGTGCCTTATAAATTTTTCGCTCTCGACGGGAGACTCGCAAGCTCTT
AGGATTCTTAGGCCATGAAGACTTATCTTCGAAACTTGGGCACAGGTTCG
CTGGCAGATCTTCTACTAATACGCGGGAATATTACTCTTCGTTTTGGTGC
CTTATAAATTTTTCGCTCTCGACGGGAGACTCGCAAGCTCTTAGGATTCT
TAGGCCATGA
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