mRNA_F-serratus_M_contig698.18096.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig698.18096.1
Unique NamemRNA_F-serratus_M_contig698.18096.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig698.18096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig698contigF-serratus_M_contig698:307207..307604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size398
Cds size273
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932132.1091206-UTR-F-serratus_M_contig698:307206..3073311622932132.1091206-UTR-F-serratus_M_contig698:307206..307331Fucus serratus maleUTRF-serratus_M_contig698 307207..307331 +
1690964163.468685-UTR-F-serratus_M_contig698:307206..3073311690964163.468685-UTR-F-serratus_M_contig698:307206..307331Fucus serratus maleUTRF-serratus_M_contig698 307207..307331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932132.1244795-CDS-F-serratus_M_contig698:307331..3076041622932132.1244795-CDS-F-serratus_M_contig698:307331..307604Fucus serratus maleCDSF-serratus_M_contig698 307332..307604 +
1690964163.4799948-CDS-F-serratus_M_contig698:307331..3076041690964163.4799948-CDS-F-serratus_M_contig698:307331..307604Fucus serratus maleCDSF-serratus_M_contig698 307332..307604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig698.18096.1prot_F-serratus_M_contig698.18096.1Fucus serratus malepolypeptideF-serratus_M_contig698 307332..307604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig698.18096.1

>prot_F-serratus_M_contig698.18096.1 ID=prot_F-serratus_M_contig698.18096.1|Name=mRNA_F-serratus_M_contig698.18096.1|organism=Fucus serratus male|type=polypeptide|length=91bp
MVQNKDELPLYHFGRQNERTSVASARRRRMGMGLKRRGGWNSGNLWLVVL
CSLASVAFFFGTLLGMELARTPQGPAKALESGMLCEFEYW*
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mRNA from alignment at F-serratus_M_contig698:307207..307604+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig698.18096.1 ID=mRNA_F-serratus_M_contig698.18096.1|Name=mRNA_F-serratus_M_contig698.18096.1|organism=Fucus serratus male|type=mRNA|length=398bp|location=Sequence derived from alignment at F-serratus_M_contig698:307207..307604+ (Fucus serratus male)
TTTTTCAAATCGTACAATATGAACTCCGTGTGGACTAATCTATCTATTTC
CTTGCGTGCTTCCGGGTGCGGAGTTTAGAGAGTAGGGTAGAACCAACCGA
CACTATCCCAAGGACGTCGGACATCATGGTCCAAAACAAGGATGAACTTC
CGCTTTACCACTTCGGTCGACAGAATGAACGAACAAGCGTCGCGTCGGCG
AGGAGAAGGAGAATGGGCATGGGCCTTAAGCGGCGGGGCGGCTGGAACTC
GGGTAACCTGTGGCTTGTGGTACTCTGTTCACTAGCAAGCGTAGCCTTTT
TTTTTGGAACGTTGCTTGGGATGGAGCTCGCTCGCACACCTCAGGGGCCT
GCTAAGGCTTTGGAATCAGGTATGTTGTGTGAGTTCGAGTACTGGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig698:307207..307604+

>mRNA_F-serratus_M_contig698.18096.1 ID=mRNA_F-serratus_M_contig698.18096.1|Name=mRNA_F-serratus_M_contig698.18096.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig698:307207..307604+ (Fucus serratus male)
ATGGTCCAAAACAAGGATGAACTTCCGCTTTACCACTTCGGTCGACAGAA
TGAACGAACAAGCGTCGCGTCGGCGAGGAGAAGGAGAATGGGCATGGGCC
TTAAGCGGCGGGGCGGCTGGAACTCGGGTAACCTGTGGCTTGTGGTACTC
TGTTCACTAGCAAGCGTAGCCTTTTTTTTTGGAACGTTGCTTGGGATGGA
GCTCGCTCGCACACCTCAGGGGCCTGCTAAGGCTTTGGAATCAGGTATGT
TGTGTGAGTTCGAGTACTGGTAAATGGTCCAAAACAAGGATGAACTTCCG
CTTTACCACTTCGGTCGACAGAATGAACGAACAAGCGTCGCGTCGGCGAG
GAGAAGGAGAATGGGCATGGGCCTTAAGCGGCGGGGCGGCTGGAACTCGG
GTAACCTGTGGCTTGTGGTACTCTGTTCACTAGCAAGCGTAGCCTTTTTT
TTTGGAACGTTGCTTGGGATGGAGCTCGCTCGCACACCTCAGGGGCCTGC
TAAGGCTTTGGAATCAGGTATGTTGTGTGAGTTCGAGTACTGGTAA
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