mRNA_F-serratus_M_contig6963.18071.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6963.18071.1
Unique NamemRNA_F-serratus_M_contig6963.18071.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6963.18071.1 vs. uniprot
Match: A0A6H5KJX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX9_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.520e-10
Identity = 51/108 (47.22%), Postives = 61/108 (56.48%), Query Frame = 2 
Query:  284 DSRPPELIKSCFIAITRTEKTYLESSSGGGGQGSSDTGNDCGGLCAMTMATPTPV-RGGAVVGGXXXXXXXXXXXAKGSRAEAAQQGFWSRVEDGLTSFLVLALRVLR 604
            DSRP EL+++C +A+T  EK  L++  GG G  SSD G      CAMTMATPTPV RG      XX                    GF+ RVEDG+T+FLVLAL VLR
Sbjct: 1045 DSRPLELVEACALAVTAEEKAALDN--GGYGVSSSDGGGQY--PCAMTMATPTPVYRGXXXXXXXXAVFAPPRAGVGXXXXXXGGLGFFGRVEDGITAFLVLALSVLR 1148
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BLAST of mRNA_F-serratus_M_contig6963.18071.1 vs. uniprot
Match: D7FGV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV3_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.220e-5
Identity = 49/110 (44.55%), Postives = 57/110 (51.82%), Query Frame = 2 
Query:  284 DSRPPELIKSCFIAITRTEKTYLESSSGGGGQGSSDTGNDCGGL-CAMTMATPTPVRGGAVVGGXXXXXXXXXXXA--KGSRAEAAQQGFWSRVEDGLTSFLVLALRVLR 604
            DSRP EL+K+C +A+T  EK   +      G          G   CAMTMATPTPV  G     XXXXX      A            GF+ RVEDG+T+FLVLAL VLR
Sbjct:  639 DSRPLELVKACALAVTAEEKAARDK-----GXXXXXXXXXXGQYPCAMTMATPTPVHRGXXXXXXXXXXAFAPLRAGVXXXXXXXXGLGFFGRVEDGITAFLVLALSVLR 743
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6963.18071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJX9_9PHAE3.520e-1047.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGV3_ECTSI1.220e-544.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6963contigF-serratus_M_contig6963:3901..6830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size894
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6963.18071.1prot_F-serratus_M_contig6963.18071.1Fucus serratus malepolypeptideF-serratus_M_contig6963 4097..4932 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932125.1137884-UTR-F-serratus_M_contig6963:3900..40961622932125.1137884-UTR-F-serratus_M_contig6963:3900..4096Fucus serratus maleUTRF-serratus_M_contig6963 3901..4096 +
1690964159.9783206-UTR-F-serratus_M_contig6963:3900..40961690964159.9783206-UTR-F-serratus_M_contig6963:3900..4096Fucus serratus maleUTRF-serratus_M_contig6963 3901..4096 +
1622932125.1996093-UTR-F-serratus_M_contig6963:4932..50381622932125.1996093-UTR-F-serratus_M_contig6963:4932..5038Fucus serratus maleUTRF-serratus_M_contig6963 4933..5038 +
1690964160.0082872-UTR-F-serratus_M_contig6963:4932..50381690964160.0082872-UTR-F-serratus_M_contig6963:4932..5038Fucus serratus maleUTRF-serratus_M_contig6963 4933..5038 +
1622932125.286438-UTR-F-serratus_M_contig6963:6751..68301622932125.286438-UTR-F-serratus_M_contig6963:6751..6830Fucus serratus maleUTRF-serratus_M_contig6963 6752..6830 +
1690964160.0175319-UTR-F-serratus_M_contig6963:6751..68301690964160.0175319-UTR-F-serratus_M_contig6963:6751..6830Fucus serratus maleUTRF-serratus_M_contig6963 6752..6830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932125.1274028-CDS-F-serratus_M_contig6963:4096..45031622932125.1274028-CDS-F-serratus_M_contig6963:4096..4503Fucus serratus maleCDSF-serratus_M_contig6963 4097..4503 +
1690964159.9889321-CDS-F-serratus_M_contig6963:4096..45031690964159.9889321-CDS-F-serratus_M_contig6963:4096..4503Fucus serratus maleCDSF-serratus_M_contig6963 4097..4503 +
1622932125.1827154-CDS-F-serratus_M_contig6963:4826..49321622932125.1827154-CDS-F-serratus_M_contig6963:4826..4932Fucus serratus maleCDSF-serratus_M_contig6963 4827..4932 +
1690964159.9986231-CDS-F-serratus_M_contig6963:4826..49321690964159.9986231-CDS-F-serratus_M_contig6963:4826..4932Fucus serratus maleCDSF-serratus_M_contig6963 4827..4932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6963.18071.1

>prot_F-serratus_M_contig6963.18071.1 ID=prot_F-serratus_M_contig6963.18071.1|Name=mRNA_F-serratus_M_contig6963.18071.1|organism=Fucus serratus male|type=polypeptide|length=171bp
MKQATPTSATEAGLTSSRLGRVMRFCSGTDSRPPELIKSCFIAITRTEKT
YLESSSGGGGQGSSDTGNDCGGLCAMTMATPTPVRGGAVVGGSGGGVAAT
GGGAKGSRAEAAQQGFWSRVEDGLTSFLVLALRVLRLERRTGDANNCDPF
SIRLKTVVETLARPSAWVQS*
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mRNA from alignment at F-serratus_M_contig6963:3901..6830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6963.18071.1 ID=mRNA_F-serratus_M_contig6963.18071.1|Name=mRNA_F-serratus_M_contig6963.18071.1|organism=Fucus serratus male|type=mRNA|length=2930bp|location=Sequence derived from alignment at F-serratus_M_contig6963:3901..6830+ (Fucus serratus male)
AGGCTGTTCGACAGGCGACTCGAACCGCGGCCGTGCTTCTCGTTCCCTCG
ACGGGACCCCCGCCGCCAAAAGCGGCTGCGGAAGGCAGCAGCAGCGGCGC
AGGCAGGGTCGAAAGGCTCCAACGGCCAGACCTCCAATCTTTCTGGCGGG
GGAGGAGGACGGGCGCCCGCATTCAACAAAGGAATCGTCTACCTCCATGA
AGCAGGCCACCCCGACCTCGGCGACGGAAGCCGGGCTGACGTCGTCGAGG
CTCGGGCGCGTGATGAGGTTCTGCAGTGGCACCGACTCTAGGCCGCCGGA
GCTCATCAAGTCGTGCTTCATCGCGATCACCCGGACGGAGAAAACATACC
TCGAGAGCAGCAGCGGTGGCGGGGGCCAGGGTTCTTCAGATACCGGCAAC
GATTGTGGCGGGCTCTGTGCCATGACCATGGCCACGCCCACGCCGGTGCG
CGGAGGCGCTGTAGTAGGTGGATCCGGTGGAGGCGTCGCTGCTACGGGAG
GAGGGGCGAAGGGTTCGAGGGCAGAGGCGGCACAGCAAGGATTTTGGTCG
CGAGTGGAGGATGGACTAACTTCCTTTTTGGTGCTAGCGCTACGAGTTCT
CAGGTGACGACATACGGTGTTATTTTTGGTGGCCCTTCAAAAAAGGAAAT
GAGAACTTAGAAGGGTCTAGAGGGATAAGATAGGTTGCCAAAGGATGTGC
CGCGGGTCAAACGTTTGGTCTTGGTTTGTACGTTGGTCTAACGAGTTGCC
GCAGAGATATGCCTCCTTTGTTCGGGTTTTGTTTTTTCATACATATTAAT
AAATAATGATAATAGCTCAGCGGAAGTCTTGTAGAGCTTAGACTCGATTG
GCAGTCGATTGAAGCCCTCGTACGTCACCGGTTATGTATATTTTAATTCT
CATCTGTGTAACGTATTTTATAACAGGCTCGAGCGGCGCACGGGGGACGC
CAACAATTGTGACCCCTTTTCCATAAGGCTGAAAACGGTGGTGGAAACCC
TCGCGAGGCCGTCCGCCTGGGTACAGTCATAGGGCACGATCCCCACGGTC
GCGGTTACATCGCTCGTTTCGAGGCGGTATCGCAGCCTGGAGGCCTCTAT
GATGAGCTGGTGCTCTGGGAGGAAGTGGTAGCGATTCGGTGAGTCGAGGG
CCAGTGACTTGGCGCGCGGGTAAATTCACGATGATGTTGCGTGATTTACG
TTCTCTTCCTCTTATTTTTTTCTGAATAGAGATGGGAATTATTGCTAGTA
CTACGTCGTGACGGGGTTGATAATAATATACGTTGGGCGGCGCTTGAATG
CGAGTTTGATATGAGGCTTCTATGGAGCTCCTCTTTGCAAAATCGCACGA
AATCGGAAAATGAAAGAATTTCCAAGATACATTAGCTTGACGGACACCAA
GGAAGAGGATTTTGGGGACGTTTTTTGCAAGGGGTTGAATAGGCGTTTAG
AGTAGCACAACAGGCGCTTGTAGTATGTGTTCAATTTTTGTTTCTAACAT
GTCTAAAGCTTTATGACTACCGTTTTGTTGGCATGTGTTTGGGTTTTCTG
GTGTGATGCGATAATCGTTGCTAGCATTCATTTCCAGCTCCTCCTGTGTG
GCATGAGAAAATATTGGGAAGGCGTTTGCGTATATGTGGCGTGAGTAATT
ATTGGGAAGGGTTTTGGTGCTGAATTGTGTGGCCCACGATTAGCACCAAC
ATCATTAGTTGCGGGCAGCATAATGGTAGAGTGTGGTCATCTGACCCTCT
CAGGCTCGCTACGGATGGTGATTTTGTGTTTTTTTTTGTGTGTTTTTGTG
TTTTTGTGTGTGTGTGTGTGTTTTTTTTATCACCTTATTAAAACCCTCTC
TAGATCGTTAAAAAATATTGCCAGATGGCTGAGACAATGTTTTTTTCCGA
CTAGCTAATTAGATTTTTTTTACTGTAACCAAAGTACAAAGATACAGTTA
GTCCCGCGCTGCATTGAGAAGATCCAAGGAACAATGGCGTTGGGTTGAAG
CAAGATGATGACCGTCATGAGAAGTACGCCAGTTCGGAAAAGAAAAAAAG
ACACGGAGTTGAAGGCATTTCGGGTCAACGTATGGTGGATTACACGGGTT
GGTTTGAGGCCCACTTGATCACTTTTGACAAACAGACGCTCTTCCCTTTG
TGTTTCTGGCCAACGCGGGGTCATAGTTAAGTCCGAGCATGAGGAGCATC
TGTGCGTCGTAGCCCTGACAAGTTGGAGCGAGGAACTCAGTTCTTTCCGC
GTGCCTCTTACCTCCTTGTGTGATCGCCTACTGCTTTTCGTCTACTTCCA
GGTGAATACGGGTTCGTGTACTGGATTATGCCTACATCACTGTGGTCCTC
TGTAATCGTTTCAAATGTTTTGTATTGGATTCGTCTTTATTGTTTGATGA
TGTACTACTGTTGTTTTGTCTTTGCTGGTTTTATGGTGTCCCTGCACGGC
GATCAATGTAAGTGTACAGTACAACGGTGGGCTTCTCCCCGCTATTATAC
TGTTGACCCAGTGGTACTACCATAGGGGAACCCGTTTGAATGCCATGAAG
AGGTTTTGTATTTGCAGCCTTAGAGCCGACCTGAACATTTTGACATTTTT
TCCCCTGACTGGGGGATGCTCAGAAGGTCTAGGTGCGTTCTGTATTTTCT
TCAAAAAAAAAATCATTACTTACCGTTCCGAATTCATCCCATTTCATACC
TTGGCGCTCTCCCGTATACAAACCTGTCTCGTGCCATAACTCTTCACACC
TTGTCGCCCTCCTCATAAAATGTATTTCCTGCTCCACCACCGATTCCCGT
TTTCCTCCGCCTCTTTTAAATGCCTCCCCCACCGCCATGATGGAGAGCCA
GCTGCGGGAGACTGTGCAGCGCCTGGTAAGCGAAGATCGGAACCGCCGCT
CCCGGGTCCCTTGAGATAGACATATATATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6963:3901..6830+

>mRNA_F-serratus_M_contig6963.18071.1 ID=mRNA_F-serratus_M_contig6963.18071.1|Name=mRNA_F-serratus_M_contig6963.18071.1|organism=Fucus serratus male|type=CDS|length=1026bp|location=Sequence derived from alignment at F-serratus_M_contig6963:3901..6830+ (Fucus serratus male)
ATGAAGCAGGCCACCCCGACCTCGGCGACGGAAGCCGGGCTGACGTCGTC
GAGGCTCGGGCGCGTGATGAGGTTCTGCAGTGGCACCGACTCTAGGCCGC
CGGAGCTCATCAAGTCGTGCTTCATCGCGATCACCCGGACGGAGAAAACA
TACCTCGAGAGCAGCAGCGGTGGCGGGGGCCAGGGTTCTTCAGATACCGG
CAACGATTGTGGCGGGCTCTGTGCCATGACCATGGCCACGCCCACGCCGG
TGCGCGGAGGCGCTGTAGTAGGTGGATCCGGTGGAGGCGTCGCTGCTACG
GGAGGAGGGGCGAAGGGTTCGAGGGCAGAGGCGGCACAGCAAGGATTTTG
GTCGCGAGTGGAGGATGGACTAACTTCCTTTTTGGTGCTAGCGCTACGAG
TTCTCAGATGAAGCAGGCCACCCCGACCTCGGCGACGGAAGCCGGGCTGA
CGTCGTCGAGGCTCGGGCGCGTGATGAGGTTCTGCAGTGGCACCGACTCT
AGGCCGCCGGAGCTCATCAAGTCGTGCTTCATCGCGATCACCCGGACGGA
GAAAACATACCTCGAGAGCAGCAGCGGTGGCGGGGGCCAGGGTTCTTCAG
ATACCGGCAACGATTGTGGCGGGCTCTGTGCCATGACCATGGCCACGCCC
ACGCCGGTGCGCGGAGGCGCTGTAGTAGGTGGATCCGGTGGAGGCGTCGC
TGCTACGGGAGGAGGGGCGAAGGGTTCGAGGGCAGAGGCGGCACAGCAAG
GATTTTGGTCGCGAGTGGAGGATGGACTAACTTCCTTTTTGGTGCTAGCG
CTACGAGTTCTCAGGCTCGAGCGGCGCACGGGGGACGCCAACAATTGTGA
CCCCTTTTCCATAAGGCTGAAAACGGTGGTGGAAACCCTCGCGAGGCCGT
CCGCCTGGGTACAGTCATAGGCTCGAGCGGCGCACGGGGGACGCCAACAA
TTGTGACCCCTTTTCCATAAGGCTGAAAACGGTGGTGGAAACCCTCGCGA
GGCCGTCCGCCTGGGTACAGTCATAG
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