mRNA_F-serratus_M_contig6963.18070.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6963.18070.1
Unique NamemRNA_F-serratus_M_contig6963.18070.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6963.18070.1 vs. uniprot
Match: A0A6H5KJX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX9_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.720e-20
Identity = 63/122 (51.64%), Postives = 75/122 (61.48%), Query Frame = 3 
Query:    3 SVRRISSEDAEAGLESVFQFVEAFREIMVEGLSTLPPSPAVQTPAAGGGSSALGGGDGWGRPGTRLTMALLQERLDIVGLVGAQGPCIPRWRAQHPDTSVALLEA----TRTAAVLLVPSTG 356
            S  RI   +AEAGL  VF+FV+ FRE MVEGLS +     V  P  GGG               RLT+A++QE +D+ G+V A GP + RWRAQHP TS  LLEA    TRTAAVLLVP+TG
Sbjct:  848 SRERIGPREAEAGLSQVFRFVDTFRETMVEGLSLV-----VSAPPTGGG---------------RLTLAVVQESVDVAGVVAALGPWVERWRAQHPGTSTQLLEAVRQATRTAAVLLVPATG 949
[Close]
BLAST of mRNA_F-serratus_M_contig6963.18070.1 vs. uniprot
Match: D7FGV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV3_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.200e-19
Identity = 62/122 (50.82%), Postives = 75/122 (61.48%), Query Frame = 3 
Query:    3 SVRRISSEDAEAGLESVFQFVEAFREIMVEGLSTLPPSPAVQTPAAGGGSSALGGGDGWGRPGTRLTMALLQERLDIVGLVGAQGPCIPRWRAQHPDTSVALLEA----TRTAAVLLVPSTG 356
            S  R+   +AEAGL  VF+FV+AFRE MV GLS +     V  P  GGG               RLT+A++QE +D+ G+V A GP + RWRAQHP TS  LLEA    TRTAAVLLVP+TG
Sbjct:  439 SRERMGPREAEAGLSQVFRFVDAFRETMVVGLSLV-----VSAPPTGGG---------------RLTLAVVQESMDVAGVVAALGPWMSRWRAQHPGTSTQLLEAVRQATRTAAVLLVPATG 540
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6963.18070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJX9_9PHAE1.720e-2051.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGV3_ECTSI1.200e-1950.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6963contigF-serratus_M_contig6963:2949..4907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1307
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6963.18070.1prot_F-serratus_M_contig6963.18070.1Fucus serratus malepolypeptideF-serratus_M_contig6963 3032..4100 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932125.337359-UTR-F-serratus_M_contig6963:2948..30311622932125.337359-UTR-F-serratus_M_contig6963:2948..3031Fucus serratus maleUTRF-serratus_M_contig6963 2949..3031 +
1690964160.0268807-UTR-F-serratus_M_contig6963:2948..30311690964160.0268807-UTR-F-serratus_M_contig6963:2948..3031Fucus serratus maleUTRF-serratus_M_contig6963 2949..3031 +
1622932125.3861382-UTR-F-serratus_M_contig6963:4100..49071622932125.3861382-UTR-F-serratus_M_contig6963:4100..4907Fucus serratus maleUTRF-serratus_M_contig6963 4101..4907 +
1690964160.0558894-UTR-F-serratus_M_contig6963:4100..49071690964160.0558894-UTR-F-serratus_M_contig6963:4100..4907Fucus serratus maleUTRF-serratus_M_contig6963 4101..4907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932125.354018-CDS-F-serratus_M_contig6963:3031..32621622932125.354018-CDS-F-serratus_M_contig6963:3031..3262Fucus serratus maleCDSF-serratus_M_contig6963 3032..3262 +
1690964160.0371053-CDS-F-serratus_M_contig6963:3031..32621690964160.0371053-CDS-F-serratus_M_contig6963:3031..3262Fucus serratus maleCDSF-serratus_M_contig6963 3032..3262 +
1622932125.3716004-CDS-F-serratus_M_contig6963:3914..41001622932125.3716004-CDS-F-serratus_M_contig6963:3914..4100Fucus serratus maleCDSF-serratus_M_contig6963 3915..4100 +
1690964160.0455954-CDS-F-serratus_M_contig6963:3914..41001690964160.0455954-CDS-F-serratus_M_contig6963:3914..4100Fucus serratus maleCDSF-serratus_M_contig6963 3915..4100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6963.18070.1

>prot_F-serratus_M_contig6963.18070.1 ID=prot_F-serratus_M_contig6963.18070.1|Name=mRNA_F-serratus_M_contig6963.18070.1|organism=Fucus serratus male|type=polypeptide|length=139bp
MVEGLSTLPPSPAVQTPAAGGGSSALGGGDGWGRPGTRLTMALLQERLDI
VGLVGAQGPCIPRWRAQHPDTSVALLEATRTAAVLLVPSTGPPPPKAAAE
GSSSGAGRVERLQRPDLQSFWRGRRTGARIQQRNRLPP*
back to top

mRNA from alignment at F-serratus_M_contig6963:2949..4907+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6963.18070.1 ID=mRNA_F-serratus_M_contig6963.18070.1|Name=mRNA_F-serratus_M_contig6963.18070.1|organism=Fucus serratus male|type=mRNA|length=1959bp|location=Sequence derived from alignment at F-serratus_M_contig6963:2949..4907+ (Fucus serratus male)
CCAGCGTGCGACGCATCTCGAGCGAGGACGCGGAAGCGGGACTCGAGTCG
GTTTTCCAGTTTGTCGAGGCGTTTCGCGAGATCATGGTGGAAGGGCTGTC
CACGCTGCCTCCATCCCCGGCAGTGCAAACGCCTGCGGCGGGCGGGGGGA
GTTCGGCCTTGGGAGGCGGCGATGGATGGGGTAGACCGGGGACACGGTTG
ACAATGGCCCTGCTCCAGGAGAGGTTGGACATCGTCGGATTGGTGGGTGC
GCAGGGGCCGTGTATTCCGAGGTGGAGGGCTCAGCACCCAGACACTTCTG
TGGCGTTGCTTGAGGTGCGTGGCGTAATGTAGAAGTGGAGGGGGTTTCCC
ATACAGTATGTGAACATGGAACTTTTTGTTTGAAAAACATACGGTATCTT
GCAACCGAAGCAGAGGAACGGTCCTGGAAAGCGCTTCGTGCGAGTTTTTA
TGAGTTTTGTCAGATATTGTTTTTGCCTTGCCCTGCGAAAAACTAGTTGA
AGCCATGTCTCCTACGGCTCTTTTCCATTTTTTGTTGAAAACGTTTCTGT
ATGATAACGACGTGTTCCGCTCTTGTACCATATATTATCTATTCATGCCT
TTGGGACAGCCGTACACCATCCAGCTCTTTTGTCTCCACTCTCTTATATC
ATCACGTATGTTTTCGTTCGCTTTTCCCCTCAAAATAATCCCATTATCTT
CCTCCTTTTCCTCTCTAAATGTTACCAACACTCCATCTCCCTCGCTTTTT
AAACATGCTCCTGGACAGACGTGTTCGGCAAGAGACTAGACTTTGTTCCT
CAAAACTTTCCCGTAACGGCATCCTTCATCATGCCTTCAATGACCACATA
TTTGTATTTCTACGTAGTTTATGGTCGTTCACAGTATACGTTTATCATTT
TCTGAAGAACAAAACAAACCAAAAACTGTATCCTCCTTCTATCGCGCTCG
AAAGGCTGTTCGACAGGCGACTCGAACCGCGGCCGTGCTTCTCGTTCCCT
CGACGGGACCCCCGCCGCCAAAAGCGGCTGCGGAAGGCAGCAGCAGCGGC
GCAGGCAGGGTCGAAAGGCTCCAACGGCCAGACCTCCAATCTTTCTGGCG
GGGGAGGAGGACGGGCGCCCGCATTCAACAAAGGAATCGTCTACCTCCAT
GAAGCAGGCCACCCCGACCTCGGCGACGGAAGCCGGGCTGACGTCGTCGA
GGCTCGGGCGCGTGATGAGGTTCTGCAGTGGCACCGACTCTAGGCCGCCG
GAGCTCATCAAGTCGTGCTTCATCGCGATCACCCGGACGGAGAAAACATA
CCTCGAGAGCAGCAGCGGTGGCGGGGGCCAGGGTTCTTCAGATACCGGCA
ACGATTGTGGCGGGCTCTGTGCCATGACCATGGCCACGCCCACGCCGGTG
CGCGGAGGCGCTGTAGTAGGTGGATCCGGTGGAGGCGTCGCTGCTACGGG
AGGAGGGGCGAAGGGTTCGAGGGCAGAGGCGGCACAGCAAGGATTTTGGT
CGCGAGTGGAGGATGGACTAACTTCCTTTTTGGTGCTAGCGCTACGAGTT
CTCAGGTGACGACATACGGTGTTATTTTTGGTGGCCCTTCAAAAAAGGAA
ATGAGAACTTAGAAGGGTCTAGAGGGATAAGATAGGTTGCCAAAGGATGT
GCCGCGGGTCAAACGTTTGGTCTTGGTTTGTACGTTGGTCTAACGAGTTG
CCGCAGAGATATGCCTCCTTTGTTCGGGTTTTGTTTTTTCATACATATTA
ATAAATAATGATAATAGCTCAGCGGAAGTCTTGTAGAGCTTAGACTCGAT
TGGCAGTCGATTGAAGCCCTCGTACGTCACCGGTTATGTATATTTTAATT
CTCATCTGTGTAACGTATTTTATAACAGGCTCGAGCGGCGCACGGGGGAC
GCCAACAATTGTGACCCCTTTTCCATAAGGCTGAAAACGGTGGTGGAAAC
CCTCGCGAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6963:2949..4907+

>mRNA_F-serratus_M_contig6963.18070.1 ID=mRNA_F-serratus_M_contig6963.18070.1|Name=mRNA_F-serratus_M_contig6963.18070.1|organism=Fucus serratus male|type=CDS|length=834bp|location=Sequence derived from alignment at F-serratus_M_contig6963:2949..4907+ (Fucus serratus male)
ATGGTGGAAGGGCTGTCCACGCTGCCTCCATCCCCGGCAGTGCAAACGCC
TGCGGCGGGCGGGGGGAGTTCGGCCTTGGGAGGCGGCGATGGATGGGGTA
GACCGGGGACACGGTTGACAATGGCCCTGCTCCAGGAGAGGTTGGACATC
GTCGGATTGGTGGGTGCGCAGGGGCCGTGTATTCCGAGGTGGAGGGCTCA
GCACCCAGACACTTCTGTGGCGTTGCTTGAGATGGTGGAAGGGCTGTCCA
CGCTGCCTCCATCCCCGGCAGTGCAAACGCCTGCGGCGGGCGGGGGGAGT
TCGGCCTTGGGAGGCGGCGATGGATGGGGTAGACCGGGGACACGGTTGAC
AATGGCCCTGCTCCAGGAGAGGTTGGACATCGTCGGATTGGTGGGTGCGC
AGGGGCCGTGTATTCCGAGGTGGAGGGCTCAGCACCCAGACACTTCTGTG
GCGTTGCTTGAGGCGACTCGAACCGCGGCCGTGCTTCTCGTTCCCTCGAC
GGGACCCCCGCCGCCAAAAGCGGCTGCGGAAGGCAGCAGCAGCGGCGCAG
GCAGGGTCGAAAGGCTCCAACGGCCAGACCTCCAATCTTTCTGGCGGGGG
AGGAGGACGGGCGCCCGCATTCAACAAAGGAATCGTCTACCTCCATGAGC
GACTCGAACCGCGGCCGTGCTTCTCGTTCCCTCGACGGGACCCCCGCCGC
CAAAAGCGGCTGCGGAAGGCAGCAGCAGCGGCGCAGGCAGGGTCGAAAGG
CTCCAACGGCCAGACCTCCAATCTTTCTGGCGGGGGAGGAGGACGGGCGC
CCGCATTCAACAAAGGAATCGTCTACCTCCATGA
back to top