mRNA_F-serratus_M_contig696.18066.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig696.18066.1
Unique NamemRNA_F-serratus_M_contig696.18066.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig696.18066.1 vs. uniprot
Match: D7FMN3_ECTSI (Ribosome biogenesis regulatory protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN3_ECTSI)

HSP 1 Score: 397 bits (1019), Expect = 1.790e-135
Identity = 209/277 (75.45%), Postives = 230/277 (83.03%), Query Frame = 1
Query:    1 QFDLRNLLVVNPHQVDEEALTRQAGVYLERQAQAAVQSLVNRLFVLPTTSSEVGPVARLPAKEESVLPRAKPVPAPKAETKWDRFAREKGITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKNITKRAKNQERAPGAAKPGIPVDLASGRKDRAGVAAAGGGLEGGVAMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRNHKGVRRAFKPVTVASGDETRSHIKILNAVMIGKSKSADKEG 831
            QFDLRNLLVVNPHQVDE+AL   +  YL+ QAQAAVQSL+NRLFVLPT  SEVGPVA LPAKEES+LPRAKPVPAPKAET+WDRFA+EKGITG KRSRMVWD+D+KEWRPRHGYKRANDGVLNH IVE+K GKD   +PW+EAR EKK RV KN++ RAKN ERA G AKPGIPVDL    KD +G         GG   KRGK  TKGALE+VQ STASMGKFDERR AEPERR  KGVRRAFKPVTV SG+ET+ H+KILN+VMIGKSKSADK+G
Sbjct:   31 QFDLRNLLVVNPHQVDEQALADDSEEYLKGQAQAAVQSLINRLFVLPTVPSEVGPVATLPAKEESILPRAKPVPAPKAETRWDRFAKEKGITGSKRSRMVWDDDLKEWRPRHGYKRANDGVLNHAIVEVKPGKDPMANPWSEAREEKKGRVEKNLSNRAKNVERAGGGAKPGIPVDLLPSAKDGSG--------GGGAPAKRGKANTKGALELVQHSTASMGKFDERRHAEPERRKGKGVRRAFKPVTVGSGEETQGHLKILNSVMIGKSKSADKDG 299          
BLAST of mRNA_F-serratus_M_contig696.18066.1 vs. uniprot
Match: A0A836CG24_9STRA (Ribosome biogenesis regulatory protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG24_9STRA)

HSP 1 Score: 239 bits (611), Expect = 3.630e-70
Identity = 146/286 (51.05%), Postives = 181/286 (63.29%), Query Frame = 1
Query:    4 FDLRNLLVVNPHQVDEEALTRQAG----VYLERQAQAAVQSLVNRLFVLPTTSSEVGPVARLPAKEESVLPRAKPVPAPKAETKWDRFAREKGITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKNITKRAKNQERAPGA-AKPGIPVDLASGRKDRAGVAAAGGGLEGGVAMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRNHKG-----VRRAFKPVTVASGDETRSH--IKILNAVMIGKSKSADK 825
            FDLRNL+  NPH VD  +L   A       +ER A+  VQ L+ +LF LP+  S VGPVA LPA+E + +PR KP+P P+AETKW++FA+EKGI  KK SRMVWD D KEWRP  GYKR NDGVL+ PIVE K   D   DPW EARA KKARV KN+T+RAKN  R+ G     GIP+D+    +  AG A +          KRG+  T+ ALE+ Q STASMGKFD +R  EPER+   G      R+ FKP+ V  G +T     +KILN+VMI + K  +K
Sbjct:   28 FDLRNLVAFNPHAVDAASLGSTAEERERALMER-ARMGVQQLMAKLFTLPSEPSNVGPVAHLPAEEVTQVPREKPLPKPRAETKWEKFAKEKGIKAKKSSRMVWDEDHKEWRPNWGYKRGNDGVLDLPIVEHKSNADIMADPWTEARAAKKARVVKNLTQRAKNDMRSSGKNPMAGIPLDMMPAARGLAGSAGS---------RKRGRDSTRKALELAQASTASMGKFDSKRAGEPERKKGAGGVAAAARQKFKPLVVKGGAKTEGEGALKILNSVMINRDKRKNK 303          
BLAST of mRNA_F-serratus_M_contig696.18066.1 vs. uniprot
Match: W7U7Y9_9STRA (Ribosome biogenesis regulatory protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U7Y9_9STRA)

HSP 1 Score: 184 bits (468), Expect = 4.840e-52
Identity = 130/302 (43.05%), Postives = 167/302 (55.30%), Query Frame = 1
Query:    4 FDLRNLLVVNPHQVDEEALTRQAGVYLERQAQAAVQSLVNRLFVLPTTSSEVGPVARLPAKEESVLPRAKPVPAPKAETKWDRFAREKGITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKNITKRAKNQER-------APG-------------------AAKP-----GIPVDLASGRKDRAGVAAAGG----GLEGGVAM--KRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRNHKGVRRAFKPVTVASGDETRSHIKILNAVM 798
            +DL +L  V+ H VD E        YL   A   VQ +VNRLF LP   S  GPV  LP    + LPRAKP+P  +  T+W++FA+EKGIT KKRSR VWD D +EWRPR GYKRA +GV +  IVE+K G+D  +DPW +A+  K ARV KN+ ++AKN+         APG                   AA P     G+PVDL + +K    V A GG      EGG A+  KRGKV    ALE+ QQSTAS+GKFD +   EPE++    V++  K   VA         K +N+V+
Sbjct:   35 YDLHHLAAVDSHPVDLEGFQSDPEKYLWESATFGVQGIVNRLFELPYEQSNTGPVVTLPGAT-TYLPRAKPLPEARQATRWEKFAKEKGITKKKRSRTVWDEDAQEWRPRWGYKRAKNGVEDAAIVEVKPGEDPNVDPWTQAQEAKSARVAKNLQQQAKNKGMGRGTSILAPGTKPGKRVGKREREAMAAATAAGPPAPVYGLPVDLPATKKH---VQAPGGPGAASEEGGKAVPKKRGKVAGLKALEVAQQSTASLGKFDAKLAGEPEKK----VKKVRKVAPVADSKSLVEESKRMNSVL 328          
BLAST of mRNA_F-serratus_M_contig696.18066.1 vs. uniprot
Match: A0A7S2UUR0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUR0_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.320e-50
Identity = 120/281 (42.70%), Postives = 164/281 (58.36%), Query Frame = 1
Query:    4 FDLRNLLVVNPHQVDEEALTRQAGVYLERQAQAAVQSLVNRLFVLPTTSSEVGPVARLP------AKEESVLPRAKPVPAPKAETKWDRFAREKGITGKK-RSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKNITKRAKNQERAPG--AAKPGIPVDLASGRKDRAGVAAAGGGLEGGVAMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRNHKGVRRAFKPVTVASGD-ETRSHIKILNAVMIGKSKS 816
            FDL NL   + H V+ + L +    +L        Q L++RLF LP  SSEVGP+A LP      A     LPR K +P  K ET+W++FAREKGI   + R +MVWD    ++RPR GY+R  +  ++HPIVE+KEG D   DPW   +  KK RV KN+ ++ KNQ  A    AA  GIPVDL S        A A G ++    +KRG+  T+  L +VQ STASMGKFDE R  EPE++  +G RR F+P+  A    E+++ +K + A+++ K KS
Sbjct:  180 FDLHNLCCSDTHPVELDKLRKGPEKHLLDLTTENAQDLIHRLFDLPAKSSEVGPIAELPGVLHFSAPGAMRLPREKRLPELKEETRWEKFAREKGIRKTQAREKMVWDEATGKYRPRFGYQRGGEDHMDHPIVEVKEGHDPLADPWTAKKVAKKGRVAKNMLQQMKNQLHAGNTRAAPAGIPVDLVSATARSVASARAAGTMK--PVLKRGRDKTEKTLRLVQNSTASMGKFDEVRQGEPEKKARQGKRRKFQPLLSAQPKAESQAQLKTVQAILVNKGKS 458          
BLAST of mRNA_F-serratus_M_contig696.18066.1 vs. uniprot
Match: A0A7S2WL01_9STRA (Ribosome biogenesis regulatory protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WL01_9STRA)

HSP 1 Score: 178 bits (452), Expect = 8.850e-50
Identity = 123/294 (41.84%), Postives = 164/294 (55.78%), Query Frame = 1
Query:   10 LRNLLVVNPHQVDEEALT-----RQAGVYLERQAQAAVQSLVNRLFVLPTTSSEVGPVARLPAKEESVLPRAKPVPAPKAETKWDRFAREKGITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKNITKRAKNQERAPG---AAKPGIPVDLASGRKDRAGVAAAGGGLEGGVAMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRNHKGVRRAFKPVTVASG---DETRSHIKILNAVMIGKSKSADKEGGPQLKGVAG 858
            LR+L    P  +DE  ++     R    +L R A  A Q L+N L+ LPT  +++GPVA LP     +LPR K +P P+AET+W++FA+EKGI  KKR RMVWD   ++WRPR+GY+RAND   ++PI+E+K G+D   DPW   R EK+ARV+KN   R +N ERA       K G+PVDL              GG E     K+GK G   AL + Q STASMGKFD R  +EPE++   G RR      +  G   +E   + K+L  V+    K  +      LKG AG
Sbjct:   42 LRHLAGTEPTPLDEGEMSKLGNGRSLEKFLHRAATEAAQQLINALWRLPTQQNDMGPVATLPPST-LILPREKRLPQPRAETRWEKFAKEKGIRNKKRDRMVWDEAEQQWRPRYGYQRAND-ESSYPIMEVKAGEDPFDDPWDRLRQEKRARVDKNERNRQRNAERAERQITGKKAGLPVDL--------------GGNE-----KKGKQGVSKALNLAQSSTASMGKFDVRVSSEPEQKKVSGTRRKLPANDLGRGGMKNEADRNSKLLARVLNAADKPKET-----LKGKAG 309          
BLAST of mRNA_F-serratus_M_contig696.18066.1 vs. uniprot
Match: A0A485KFR7_9STRA (Ribosome biogenesis regulatory protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KFR7_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.430e-45
Identity = 117/298 (39.26%), Postives = 163/298 (54.70%), Query Frame = 1
Query:    4 FDLRNLLVVNPHQVDEEALTRQAGVYLERQAQAAVQSLVNRLFVLPTTSSEVGPVARLPAKEESVLPRAKPVPAPKAETKWDRFAREKGITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKNITKRAKNQERAPGAAKP--------GIPVDLASGRKDRAGVAAAGGGLEGGVAMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRNHKGVRRAFKPVTVASGDETRSHIKILNAVM-----IGKSKSA----DKEGGPQLK 846
            +DL NL   + H    + ++ +    L+  A+  VQ L+N++F LP   +++GP+A+LP    + +PR KP+P PK ET+W++FAREKGI  KK  RMVWD   + W P+ GYKRAND  LN     +K G D   DPW EA+ +K  RV KN+  +A N +   G A          G+PV+L +    +A               +RGK GTK AL+ VQ STASMGKFD++R  E ER+ H G R  F  VT A   E    + +L  V+      GK+KSA    D++  P+ K
Sbjct:   30 YDLGNLAAFDTHPFKVQNVSDETE--LKAYARDNVQLLINQVFELPRDMTDMGPMAKLPVPS-TTIPREKPLPKPKVETRWEKFAREKGIKNKKEGRMVWDEAKQIWAPKWGYKRANDD-LNDWAKPVKGGADPYADPWTEAKQDKAERVQKNLRNQANNLKMGRGKAPTLPVSKTPLGVPVELLNTDDKKA--------------KQRGKEGTKAALQKVQFSTASMGKFDKKREGEGERK-HVGKRNKFLSVTGAEKTEKERSMNVLQHVLGREENKGKAKSASHGDDEDRDPKKK 308          
BLAST of mRNA_F-serratus_M_contig696.18066.1 vs. uniprot
Match: A0A1V9ZJR0_9STRA (Ribosome biogenesis regulatory protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJR0_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.460e-45
Identity = 118/291 (40.55%), Postives = 160/291 (54.98%), Query Frame = 1
Query:    4 FDLRNLLVVNPHQVDEEALTRQAGVYLERQAQAAVQSLVNRLFVLPTTSSEVGPVARLPAKEESVLPRAKPVPAPKAETKWDRFAREKGITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKNITKRAKNQERAPGAAKPGIPVDLASGRKDRAGVAAAGGGLEGGVAMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRNHKGVRRAFKPVTVASGDETRSHIKILNAVM-----IGKSKSADKEGGPQLKGVAGR 861
            +DL NL   + H    +  T +  +  +  A+  VQ L+N++F LP   +++GP+A+LPA   +V+PR KP+P PK ET+W++FAREKGI  KK+ RMVWD   + W PR GYKRAND  +N   V +K+  D   DPW E +  K  RV KN+  +A N +   G  +P +PV  A   K   G+           A +RGK GTK AL+ VQ STASMGKFD+ R  E ER+   G R  F  VT A   E    + +LN V+      GK+K+   E  P      GR
Sbjct:   30 YDLGNLAAFDTHPFGVKNTTDEKEI--KAAARENVQLLINQIFDLPRQMTDMGPMAQLPAGS-TVIPREKPLPKPKVETRWEKFAREKGIDNKKKDRMVWDEAKQAWAPRWGYKRANDD-MNDWAVPVKKNDDPFADPWTERKQAKAERVQKNLRNQANNLKNGRGI-QPSVPVPSAP--KTPLGIPVEMLDTADKKAKQRGKEGTKAALQKVQFSTASMGKFDKMRTGEAERKQT-GKRNKFLSVTGAEKTEKERSMSVLNHVLGREENKGKAKAPTAEDEPAKGKKRGR 312          
BLAST of mRNA_F-serratus_M_contig696.18066.1 vs. uniprot
Match: A0A1V9ZCQ0_9STRA (Ribosome biogenesis regulatory protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCQ0_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.020e-44
Identity = 108/273 (39.56%), Postives = 151/273 (55.31%), Query Frame = 1
Query:    4 FDLRNLLVVNPHQVDEEALTRQAGVYLERQAQAAVQSLVNRLFVLPTTSSEVGPVARLPAKEESVLPRAKPVPAPKAETKWDRFAREKGITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKNITKRAKNQERAPGA--------AKPGIPVDLASGRKDRAGVAAAGGGLEGGVAMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRNHKGVRRAFKPVTVASGDETRSHIKILNAVM 798
            +DL NL   + H    + LT +  +  +  A+  VQ L+N +F LP   ++VGP+++LP    +++PR KP+P PK ET+W++FAREKGI  KK+ RMVWD + + W PR GYKRAND + +  I  +K+  D   DPW E +  K  RV KN+  +A N +   G         A  GIPV+L   +  +                +RGK GTK AL+ VQ STASMGKFD+ R  E ER+  KG R  F  VT +   E    + +LN V+
Sbjct:   30 YDLGNLAAFDTHPFIVKNLTNENEI--KASARDNVQLLINAIFDLPREMTDVGPMSKLPVGT-TLIPREKPLPKPKVETRWEKFAREKGIENKKKERMVWDEEKQAWAPRWGYKRANDDIHDWAIP-VKKNDDPYADPWTERKQAKAERVQKNMRNQANNLKNGRGITPSVPVPKAPVGIPVELLDTQDKKT--------------KQRGKEGTKAALQKVQFSTASMGKFDKMRQGEAERKQ-KGKRNKFLSVTGSEQTEKERSMSVLNHVL 283          
BLAST of mRNA_F-serratus_M_contig696.18066.1 vs. uniprot
Match: A0A6G0WAM1_9STRA (Ribosome biogenesis regulatory protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAM1_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.710e-44
Identity = 114/285 (40.00%), Postives = 160/285 (56.14%), Query Frame = 1
Query:    4 FDLRNLLVVNPHQVDEEALTRQAGVYLERQAQAAVQSLVNRLFVLPTTSSEVGPVARLPAKEESVLPRAKPVPAPKAETKWDRFAREKGITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKNITKRAKN-------QERAPGAAKP-GIPVDLASGRKDRAGVAAAGGGLEGGVAMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRNHKGVRRAFKPVTVASGDETRSHIKILNAVM-----IGKSKSA 819
            +DL NL   + H    + ++ +    L+  A+  VQ L+N++F LP   +++GP+A+LP    +V+PR KP+P PK ET+W++FAREKGI  KK  RMVWD   + W P+ GYKRAND  LN   + +K+G+D   DPW E + EK  RV KN+  +A N       Q   P +  P G+PV+L +    +A               +RGK GTK AL+ VQ STASMGKFD++R  E ER+   G R  F  VT A   E    + +L  V+      GK+KS+
Sbjct:   31 YDLGNLAAFDTHPFKVQNVSDETE--LKVFARDNVQLLINQIFELPREMTDMGPMAQLPVGS-TVIPREKPLPKPKVETRWEKFAREKGIKNKKEGRMVWDEAKQAWAPKWGYKRANDD-LNDWAMPVKQGQDPYSDPWTENKQEKTERVQKNLRNQANNLKHGRGKQPTMPVSKTPLGVPVELLNTDDKKA--------------KQRGKEGTKAALQKVQFSTASMGKFDKKREGEGERKQT-GKRNKFLSVTGAEKTEKERSMNVLQHVLGREENKGKAKSS 296          
BLAST of mRNA_F-serratus_M_contig696.18066.1 vs. uniprot
Match: A0A067CPT1_SAPPC (Ribosome biogenesis regulatory protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CPT1_SAPPC)

HSP 1 Score: 162 bits (411), Expect = 4.190e-44
Identity = 114/294 (38.78%), Postives = 161/294 (54.76%), Query Frame = 1
Query:    4 FDLRNLLVVNPHQVDEEALTRQAGVYLERQAQAAVQSLVNRLFVLPTTSSEVGPVARLPAKEESVLPRAKPVPAPKAETKWDRFAREKGITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKNITKRAKNQERA---------PGAAKPGIPVDL--ASGRKDRAGVAAAGGGLEGGVAMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRNHKGVRRAFKPVTVASGDETRSHIKILNAVM-----IGKSKSADKEGGP 837
            +DL NL   + H    +  + +    L+  A+  VQ L+N++F LP   +++GP+A+LP    +V+PR KP+P PK ET+W+++AREKG+  KK+ RMVWD   + W PR GYKRAND + +   V +K+  D   DPW E +  K  RV KN+  +A N +RA         P A   GIPV++   S +K +                +RGK GTK AL+ VQ STASMGKFD+ R  E ER+   G R  F  VT A   E    + +LN V+      GK+K++  E  P
Sbjct:   30 YDLGNLAAFDTHPFSVKNASDEKE--LKASARDNVQLLINQIFELPRQMTDMGPMAQLPTGT-TVIPREKPLPKPKPETRWEKYAREKGVDNKKKDRMVWDEAKQAWAPRWGYKRANDDMQDW-AVPVKKNDDPFADPWTERKQAKNERVQKNLRNQAANVKRAGGMQPSVPVPKATPVGIPVEMLNTSDKKMK----------------QRGKEGTKAALQKVQFSTASMGKFDKMRTGEAERKQT-GKRNKFLSVTGAEKTEKERSMHVLNHVLGREENKGKAKASTGEDDP 302          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig696.18066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMN3_ECTSI1.790e-13575.45Ribosome biogenesis regulatory protein n=2 Tax=Ect... [more]
A0A836CG24_9STRA3.630e-7051.05Ribosome biogenesis regulatory protein-domain-cont... [more]
W7U7Y9_9STRA4.840e-5243.05Ribosome biogenesis regulatory protein n=2 Tax=Mon... [more]
A0A7S2UUR0_9STRA1.320e-5042.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WL01_9STRA8.850e-5041.84Ribosome biogenesis regulatory protein n=1 Tax=Rhi... [more]
A0A485KFR7_9STRA1.430e-4539.26Ribosome biogenesis regulatory protein n=1 Tax=Aph... [more]
A0A1V9ZJR0_9STRA1.460e-4540.55Ribosome biogenesis regulatory protein n=1 Tax=Ach... [more]
A0A1V9ZCQ0_9STRA1.020e-4439.56Ribosome biogenesis regulatory protein n=1 Tax=Thr... [more]
A0A6G0WAM1_9STRA1.710e-4440.00Ribosome biogenesis regulatory protein n=1 Tax=Aph... [more]
A0A067CPT1_SAPPC4.190e-4438.78Ribosome biogenesis regulatory protein n=2 Tax=Sap... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig696contigF-serratus_M_contig696:127890..132873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.1
Seed ortholog evalue4e-64
Seed eggNOG ortholog2880.D7FMN3
Preferred nameRRS1
KEGG koko:K14852,ko:K15030
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000054,GO:0000055,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000793,GO:0000794,GO:0000819,GO:0001650,GO:0002244,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005783,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0007275,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009966,GO:0009987,GO:0010467,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030097,GO:0030154,GO:0030490,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033750,GO:0034399,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048285,GO:0048513,GO:0048534,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051276,GO:0051303,GO:0051310,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1901796,GO:1902531,GO:1902570,GO:1903047,GO:1990904
EggNOG free text desc.ribosomal large subunit export from nucleus
EggNOG OGsCOG5225@1,KOG1765@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03012
Exons7
Model size961
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig696.18066.1prot_F-serratus_M_contig696.18066.1Fucus serratus malepolypeptideF-serratus_M_contig696 127984..131453 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932124.8154378-UTR-F-serratus_M_contig696:127889..1279831622932124.8154378-UTR-F-serratus_M_contig696:127889..127983Fucus serratus maleUTRF-serratus_M_contig696 127890..127983 -
1690964159.8139353-UTR-F-serratus_M_contig696:127889..1279831690964159.8139353-UTR-F-serratus_M_contig696:127889..127983Fucus serratus maleUTRF-serratus_M_contig696 127890..127983 -
1622932124.9017363-UTR-F-serratus_M_contig696:131453..1315161622932124.9017363-UTR-F-serratus_M_contig696:131453..131516Fucus serratus maleUTRF-serratus_M_contig696 131454..131516 -
1690964159.883015-UTR-F-serratus_M_contig696:131453..1315161690964159.883015-UTR-F-serratus_M_contig696:131453..131516Fucus serratus maleUTRF-serratus_M_contig696 131454..131516 -
1622932124.9146175-UTR-F-serratus_M_contig696:131766..1318721622932124.9146175-UTR-F-serratus_M_contig696:131766..131872Fucus serratus maleUTRF-serratus_M_contig696 131767..131872 -
1690964159.8917-UTR-F-serratus_M_contig696:131766..1318721690964159.8917-UTR-F-serratus_M_contig696:131766..131872Fucus serratus maleUTRF-serratus_M_contig696 131767..131872 -
1622932124.9301958-UTR-F-serratus_M_contig696:132748..1328731622932124.9301958-UTR-F-serratus_M_contig696:132748..132873Fucus serratus maleUTRF-serratus_M_contig696 132749..132873 -
1690964159.9000535-UTR-F-serratus_M_contig696:132748..1328731690964159.9000535-UTR-F-serratus_M_contig696:132748..132873Fucus serratus maleUTRF-serratus_M_contig696 132749..132873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932124.8287306-CDS-F-serratus_M_contig696:127983..1280581622932124.8287306-CDS-F-serratus_M_contig696:127983..128058Fucus serratus maleCDSF-serratus_M_contig696 127984..128058 -
1690964159.827565-CDS-F-serratus_M_contig696:127983..1280581690964159.827565-CDS-F-serratus_M_contig696:127983..128058Fucus serratus maleCDSF-serratus_M_contig696 127984..128058 -
1622932124.8432658-CDS-F-serratus_M_contig696:128709..1288331622932124.8432658-CDS-F-serratus_M_contig696:128709..128833Fucus serratus maleCDSF-serratus_M_contig696 128710..128833 -
1690964159.8392916-CDS-F-serratus_M_contig696:128709..1288331690964159.8392916-CDS-F-serratus_M_contig696:128709..128833Fucus serratus maleCDSF-serratus_M_contig696 128710..128833 -
1622932124.8591228-CDS-F-serratus_M_contig696:129621..1298161622932124.8591228-CDS-F-serratus_M_contig696:129621..129816Fucus serratus maleCDSF-serratus_M_contig696 129622..129816 -
1690964159.8511145-CDS-F-serratus_M_contig696:129621..1298161690964159.8511145-CDS-F-serratus_M_contig696:129621..129816Fucus serratus maleCDSF-serratus_M_contig696 129622..129816 -
1622932124.874769-CDS-F-serratus_M_contig696:130439..1305191622932124.874769-CDS-F-serratus_M_contig696:130439..130519Fucus serratus maleCDSF-serratus_M_contig696 130440..130519 -
1690964159.8623385-CDS-F-serratus_M_contig696:130439..1305191690964159.8623385-CDS-F-serratus_M_contig696:130439..130519Fucus serratus maleCDSF-serratus_M_contig696 130440..130519 -
1622932124.8895264-CDS-F-serratus_M_contig696:131354..1314531622932124.8895264-CDS-F-serratus_M_contig696:131354..131453Fucus serratus maleCDSF-serratus_M_contig696 131355..131453 -
1690964159.874108-CDS-F-serratus_M_contig696:131354..1314531690964159.874108-CDS-F-serratus_M_contig696:131354..131453Fucus serratus maleCDSF-serratus_M_contig696 131355..131453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig696.18066.1

>prot_F-serratus_M_contig696.18066.1 ID=prot_F-serratus_M_contig696.18066.1|Name=mRNA_F-serratus_M_contig696.18066.1|organism=Fucus serratus male|type=polypeptide|length=191bp
MVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKK
ARVNKNITKRAKNQERAPGAAKPGIPVDLASGRKDRAGVAAAGGGLEGGV
AMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRNHKGVRRAFKPVT
VASGDETRSHIKILNAVMIGKSKSADKEGGPQLKGVAGRL*
back to top

mRNA from alignment at F-serratus_M_contig696:127890..132873-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig696.18066.1 ID=mRNA_F-serratus_M_contig696.18066.1|Name=mRNA_F-serratus_M_contig696.18066.1|organism=Fucus serratus male|type=mRNA|length=4984bp|location=Sequence derived from alignment at F-serratus_M_contig696:127890..132873- (Fucus serratus male)
CAGTTCGACCTTCGAAACCTGCTGGTAGTGAACCCTCACCAAGTGGACGA GGAGGCGTTGACGCGACAGGCCGGGGTGTACCTGGAGCGCCAGGCACAGG CGGCGGTGCAGTCGCTCGTCAACAGGTAACTATGATGACTTGGGTGACTA CCGAATACTGGTACTGTATAATGTATAATGTATACTATATACTCTACCAC AAGTCGTACCCTCCACCGCTGTAGAGTATTAATATAATAGATGGGGAGGT ATATTTTATATTGTAGGGCGTTAAACACCTCGGGAGTATTATGGAATTCG TGTAATGCGATATACTGTAAAATATTCCAGTCTCAATGGAACATCCAATC AGCTCTTGACTGTGTTCTGTGTTTTGTGCTCTGTCGTCCACCCTTTGGTG TCTGTACAAGATTTTGAAACACCGACGTCGTAAACTAGAGGCTGCACTTA AATAGCATGATATTTTTTACAAATTGCCAGCTTTCGGTGTCCCTGTCTCC GTCGCTCCCGGAAAGAAAGTTGACCAATTGATACCGTAGTTGACTTGACT TAACTGAACTGTACCCACGTTTATGATCCATGAGGTGACATATGGAGAAA ACGCCTCCTTGTGGAAATATGTTCCCTACTCCCCTATCCATCATTTCTTT ATTATCAATGGCTTAAACTCTCATCAAGAACTGCTGTACCGCCGATATAC GCTGTAGAAACCCTCTATCACCTCTAAGAACATATTTGCCTAAGGAAAAA AAAGAGGGGCCATCTCTTCCTCCGACTTTTTTTTTTAACTGAGTGAGAGG GCAGAGGGGGTCATCTCTTCGGTCATCTCTTCGGTCATCTCTTCCTTCCC TGTGCGTTTCGAGCCATATCTATCTCTACGTTTCGACACAAGCTATAGTA ATGGTATTTTATGTTAGTATCGCGCGTGTGTGATTAGTACCTTGAATATA ATGCCGAAGAATGTAAAGAGTGGTTGATACTGAACTGCTCGATCCCATCA GGCTGTTCGTGCTCCCAACGACTTCGTCAGAGGTTGGACCGGTGGCCAGA CTTCCCGCAAAGGAGGAGTCCGTCCTTCCTCGGGCAAAGCCTGTCCCCGC TCCAAAGGTATTGTGTCTAGACGCGCATAGGCTACATAGCCCACACACAC ACGGCAACTGCAACAGCTGGACGCGTTGGTTTGGTCCTCGCAAGAAAGTG CGGTTGTCAACCCTTTCAGCACCTGACTTCTACTGCGATGGCATTACTCT ATTATAGAGCACGAAGCTGTTGTTATCCTGAGAGAGTCTAATCCGCATTC TGCTCGACTGTTTTGTTTATTTTGTTTTGTTTTTATCCGCGCGCGCGCGA CCCCCAGGCGGAGACAAAATGGGATCGCTTCGCTCGGGAGAAGGGCATCA CCGGCAAGAAGCGGTCGCGTATGGTGTGGGACAACGACATGAAAGAGTGG CGTCCGAGGCACGGCTACAAGAGGGCCAACGACGGCGTGCTGAACCACCC CATCGTGGAGATCAAGGAGGTGATAAAAGACAGGGAAGCGTGTTTTTTTA GGCGGGGACGGGGGGATGACTTTCCCACTTTCTGGGGATGTTGGCAGAGG AGGCGACGTGGGATATCGCCAACAGTCGTGATAAAGGAAAGGGGGTGGAA GGGGTGGATTGTGACCGAACCGTGATAAAGGAAAGGGGTGGATTGTGACA AATCCATTCGCTTGGTAAGGGCGCGATTACCGAACCGACCACAAACACCC TGTTCAGAACTGCTACACCGTCGCCTTTTGTTCGCTTTCCCCCTTCCACC CAGTATTTGTCTTGAAACCACCTGGTAGAGAAGAACATCGAGAAAGTGCT ACATTAGTTTCCGGCGGGTTGACACCATCCGCCGTCGGTGATGCCCAATA TGATAGAATGATAGAATGATAGAATGGGAAAATATATAATGGGACAGGAA GTCTTGAGAATTGCTCCAAAATAAGATTTGGTTTGAAGTTTCAGTGGGTC AAGACAAAACAACGCAAGCGATAACATGCGCACACTCTAACACACAGTAA CCCTACGCATAGAGAGATGTTGGTGAGATACTTTATTATGCTATATACAA CGGACGCGGTACTTCTGTAGGGCTGAATGAATAGTTGACAGGTTGATGAA GTCAGGGAGCCATATACAACGGCAGCAGCACGTTATGAAGTGTGGTTTGT ATTTCCTTTCCGTGGGTGCGTTTTTCTTTCGTTGAGATGATTCTTGAGCT TTCATTTACAGTGATCTTCCCGGTCGTCGCCGTCCCCCGCCCCCGCCTCC CCCCATCGGACGCAAACGCCTACTTTTGCTTAAATCGTATCTCGAAATCG AAAGGGCAAAGACGACACGATCGACCCCTGGGCAGAGGCGAGGGCGGAGA AGAAGGCTAGGGTTAACAAGAATATCACCAAAAGGTGGGACATTGAGAAT CCATGCGTATTTGCTGCATCCTGTGGCTTCGAGCAGTGAGGCAATGAACG AAACAGACTTGTGGTTGCCCCGAGGTCATGGCAGAAACGCCTTCGATGGA GTTTTGCAGCATTGCCGCGATGCACAGAGAGTTTGGAGAGTTGGAAAGGG TAGCTTGGGCGAAATATCAAGAACACTGTGTACCTTTAATTTTTTTGAAT AGTTGGAAGGATGTTGGATCATACGTTGTTAAAAAAGCTAATAAGCTATT GGCCGAAAGTGTACAGATTTGATGAATCTTGTCCCTTTAGCGAAAGAAAA AGTAAAGGTGTTCTTGCAGCCCTTTTATTCATATCTAAGCTATGGCTACT CAAGATGTGGTCCACCCCAAAGGAAAGCAAATCACAAGCCAAAGCCACCC CAAAGGAAATACCCTTTTACATAGCGTGCCATTGACGGGGACAGTCTCTC TCTGCAGACTTTTTTGTCAGGCGCCCTTCGCTAGACTATATTAGTATCCC CTCCGCCACAACTGCCTTTTCGCCGTCCTGGAACTCCTTATCACTTCGTC GTATTACTCCCATATGCAGTATCTATTCCCTTAAAACGTGTCCTTTGAAA CTGCCAGGGCGAAGAATCAGGAACGCGCTCCAGGAGCAGCGAAGCCCGGT ATTCCCGTTGATCTCGCGTCTGGGCGGAAAGACCGAGCAGGCGTTGCTGC TGCGGGTGGCGGGTTGGAAGGTGGGGTCGCCATGAAGCGCGGCAAGGTCG GCACGAAGGGCGCCCTGGAGATGGTGCAGCAGTCGACGGCATCGATGGGA AAGTGAGAAGAAGGGAACTGCTAACTGTTACTCTGTCTTTGTGTTATAAT AGTATTATTAATAGCATCAAAATATCATGAGTGCTGAAAGTTTACTATTT GGGTTATTCCGCCGTCCTCCGCCGTCCACCATGGATTCCATTCCTAATCC TAATTGTTACTCTGGCGGATTCATACTGCGACTGTTTCTTTTTCCAACCG GGGACGCGAGCAATAGCTGTTATAATGGAAGTATCATTTGGATCATTTGG ATCATTCGGATGTTTAGTTAAGTATTTAATTACCAGTACGGCTCTGGATT ACTCCATAATAGGTTAAATAAGTTGTGTTTTAAAAGTGTGTTAAGGGAGT GTGGGGGGATGGGGGAGGGGTGGGGCACGCTAGTGCTATCGGGGAGCTGG GAGAGAGATAGAGCAGAAGTCGTGCACGCCAATCAAGCACGTCAATCACC CTTGAGATTTTGTTAAGAGGTGAGATGAGTAAGAAGGCAGGATGAGCTAC TGGACGAAGGCCTGAGCCGATTGTCTCATATCGTTTCGCATCTGGGCGCA GAGCAAGTCTCCCCTTCATCACGTAACACCTTAGCGTTATCTCATGTTGT TTCACGTTAAACGAGTCAACAAAACTCCCCGCAGCCTGTACAGGACAATG TTTCTTTTAAAGCTGGGACTCCCTACACACTAGCACGTAGTACGCCCTGC TCCACGGTGCTCTTGAGATACACCTATCTTATCCCCCCCCCATTCTGTTG GTTTCAACTTGGCACCCTCCCTCCCTCCCTTTGCCCGAAGGTTCGATGAA CGACGCCCAGCGGAGCCAGAGAGGAGAAATCACAAGGGCGTACGACGGGC ATTCAAGCCGGTCACTGTGGCTTCGGGGGACGAGACAAGGAGCCATATCA AAATTCTCAACGCGGTGCGATGATGCGGAGGCGTTCTGTTTCGTAGGGCC AAACGTAAAATCCTGGTTGGACTATTAAAACCATTTATACTTTTAAAATG GGGAAGGGATAGGAGTGGGTGCTGTATGCTTTGAAACTTTGAACTCCTCC CCCCCAAAGGGAATAGTTCGTAAAAAAAATGAATCCTCTGTCTGACCGCT TCCGCCCTTCATTTTTTTCTCCCCATGAACGTAGTGGACACATATTTGCA ACCGGTACCTGTACGATACAACTCCGGCAAGGTATTTTCAGAGATGTCTC TCCTGCCGATCCGTCGAGAACTCTTACTAATAATACACTTGTTCCCTGCC AACAACAGCCTATGATCCTACCTATTTTTCTGACTATTTTTTCCCTTTGC GGGATGGGGATGCTCAGAAGGTCTATTAGATGCGTTCAAATTTTTCTTAA AGAACCCGTTCTTGTGTGGGGCCATAAGGTGGGAAGGAAAAAAAAAAAGG AAAATTTCTCCCCTGCGGAGAAAGGGGACAATATCAGGTAATACATCATC TGGATCTTTACAAGATACCCGCGTCTTCATCTGCCCCCCCCCCCCCCCTG CCTGCCTGCCGGCCGGCACACAAACTCATATGAACACAACACGCAATGCG TATGTACCGAAACAGGTCATGATCGGTAAGTCGAAGAGTGCCGACAAAGA GGGCGGCCCGCAACTCAAAGGCGTCGCTGGCCGCCTATGACGCGGTGGAG GGGCCTCACGATCCAGGGTCGAAGAGGAAGAAGGGCAAGGGGGCGGCGGG CAAGGCGAAAAAGTTCACCAAGCGGAGGGTGAAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig696:127890..132873-

>mRNA_F-serratus_M_contig696.18066.1 ID=mRNA_F-serratus_M_contig696.18066.1|Name=mRNA_F-serratus_M_contig696.18066.1|organism=Fucus serratus male|type=CDS|length=1146bp|location=Sequence derived from alignment at F-serratus_M_contig696:127890..132873- (Fucus serratus male)
ATGGTGTGGGACAACGACATGAAAGAGTGGCGTCCGAGGCACGGCTACAA
GAGGGCCAACGACGGCGTGCTGAACCACCCCATCGTGGAGATCAAGGAGA
TGGTGTGGGACAACGACATGAAAGAGTGGCGTCCGAGGCACGGCTACAAG
AGGGCCAACGACGGCGTGCTGAACCACCCCATCGTGGAGATCAAGGAGGG
CAAAGACGACACGATCGACCCCTGGGCAGAGGCGAGGGCGGAGAAGAAGG
CTAGGGTTAACAAGAATATCACCAAAAGGGCAAAGACGACACGATCGACC
CCTGGGCAGAGGCGAGGGCGGAGAAGAAGGCTAGGGTTAACAAGAATATC
ACCAAAAGGGCGAAGAATCAGGAACGCGCTCCAGGAGCAGCGAAGCCCGG
TATTCCCGTTGATCTCGCGTCTGGGCGGAAAGACCGAGCAGGCGTTGCTG
CTGCGGGTGGCGGGTTGGAAGGTGGGGTCGCCATGAAGCGCGGCAAGGTC
GGCACGAAGGGCGCCCTGGAGATGGTGCAGCAGTCGACGGCATCGATGGG
AAAGGCGAAGAATCAGGAACGCGCTCCAGGAGCAGCGAAGCCCGGTATTC
CCGTTGATCTCGCGTCTGGGCGGAAAGACCGAGCAGGCGTTGCTGCTGCG
GGTGGCGGGTTGGAAGGTGGGGTCGCCATGAAGCGCGGCAAGGTCGGCAC
GAAGGGCGCCCTGGAGATGGTGCAGCAGTCGACGGCATCGATGGGAAAGT
TCGATGAACGACGCCCAGCGGAGCCAGAGAGGAGAAATCACAAGGGCGTA
CGACGGGCATTCAAGCCGGTCACTGTGGCTTCGGGGGACGAGACAAGGAG
CCATATCAAAATTCTCAACGCGGTTCGATGAACGACGCCCAGCGGAGCCA
GAGAGGAGAAATCACAAGGGCGTACGACGGGCATTCAAGCCGGTCACTGT
GGCTTCGGGGGACGAGACAAGGAGCCATATCAAAATTCTCAACGCGGTCA
TGATCGGTAAGTCGAAGAGTGCCGACAAAGAGGGCGGCCCGCAACTCAAA
GGCGTCGCTGGCCGCCTATGAGTCATGATCGGTAAGTCGAAGAGTGCCGA
CAAAGAGGGCGGCCCGCAACTCAAAGGCGTCGCTGGCCGCCTATGA
back to top