mRNA_F-serratus_M_contig6958.18065.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig6958.18065.1
Unique Name	mRNA_F-serratus_M_contig6958.18065.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig6958.18065.1 vs. uniprot
Match: A0A343C631_FUCDI (ATP synthase subunit a n=3 Tax=Fucus TaxID=3011 RepID=A0A343C631_FUCDI)

HSP 1 Score: 226 bits (577), Expect = 4.600e-73
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1

Query:   25 PLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQT 366
            PLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQT
Sbjct:    5 PLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQT 118

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BLAST of mRNA_F-serratus_M_contig6958.18065.1 vs. uniprot
Match: A0A0U1WNN5_SARFS (ATP synthase subunit a n=24 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1WNN5_SARFS)

HSP 1 Score: 187 bits (476), Expect = 9.770e-58
Identity = 96/114 (84.21%), Postives = 100/114 (87.72%), Query Frame = 1

Query:   25 PLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQT 366
            PLEQFQILPF   GI LFD SITNAMITT   LGF LFV+YCLSV+  SCFP+RWQLL+E LYLTTAGLIWDSIG  GQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQT
Sbjct:    5 PLEQFQILPFVDLGIGLFDLSITNAMITTVFSLGFILFVYYCLSVFGLSCFPSRWQLLLERLYLTTAGLIWDSIGLHGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQT 118

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BLAST of mRNA_F-serratus_M_contig6958.18065.1 vs. uniprot
Match: D2YYC2_SCYLO (F-ATPase protein 6 (Fragment) n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=D2YYC2_SCYLO)

HSP 1 Score: 182 bits (463), Expect = 1.510e-57
Identity = 87/114 (76.32%), Postives = 100/114 (87.72%), Query Frame = 1

Query:   25 PLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQT 366
            PLEQFQILP  SFG+ LFD SITNAM+TT +GL FFLF+ YCL  Y  +CFP RWQL++E LY++TAGLIWDS+GP GQKYFPF+F+IFSFILISNVSGLVPYSFT+TSHLIQT
Sbjct:    5 PLEQFQILPLLSFGVNLFDLSITNAMLTTCIGLAFFLFIFYCLLSYKLNCFPTRWQLVLESLYISTAGLIWDSVGPKGQKYFPFLFVIFSFILISNVSGLVPYSFTVTSHLIQT 118

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BLAST of mRNA_F-serratus_M_contig6958.18065.1 vs. uniprot
Match: A0A089MYN0_PETFA (ATP synthase subunit a n=18 Tax=Ectocarpales TaxID=2877 RepID=A0A089MYN0_PETFA)

HSP 1 Score: 186 bits (471), Expect = 5.590e-57
Identity = 91/114 (79.82%), Postives = 101/114 (88.60%), Query Frame = 1

Query:   25 PLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQT 366
            PLEQFQILP  SFG+ LFDFSITNAMITT +GL FFLF  YCL  Y+ +CFP RWQL++E LY++TAGLIWDSIGP GQKYFPF+F+IFSFILISNVSGLVPYSFTITSHLIQT
Sbjct:    5 PLEQFQILPLLSFGVNLFDFSITNAMITTCIGLAFFLFTFYCLLSYNLNCFPTRWQLILESLYVSTAGLIWDSIGPKGQKYFPFLFVIFSFILISNVSGLVPYSFTITSHLIQT 118

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BLAST of mRNA_F-serratus_M_contig6958.18065.1 vs. uniprot
Match: A0A1I9LW45_9PHAE (ATP synthase subunit a n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW45_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 4.540e-56
Identity = 90/116 (77.59%), Postives = 103/116 (88.79%), Query Frame = 1

Query:   19 SIPLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQT 366
            S PLEQFQILP FSFG+ LFDF+ITNAMI+TF+ L FF+F+ YCLS+Y  SCFP RWQL++EGLY TTAGLIWDS+G  GQKYFPF+F+IFS ILISN+SGLVPYSFTITSHLIQT
Sbjct:    3 SSPLEQFQILPLFSFGMNLFDFTITNAMISTFISLFFFIFLFYCLSLYGLSCFPTRWQLILEGLYTTTAGLIWDSVGLQGQKYFPFLFVIFSSILISNLSGLVPYSFTITSHLIQT 118

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BLAST of mRNA_F-serratus_M_contig6958.18065.1 vs. uniprot
Match: E6ZES4_ECTSI (ATP synthase subunit a n=65 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES4_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 1.830e-55
Identity = 88/114 (77.19%), Postives = 100/114 (87.72%), Query Frame = 1

Query:   25 PLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQT 366
            PLEQFQILP  SFG  LFDFSITNAMITT + L FF+F+ YCLS Y  +CFP RWQL++E LY++TAGLIWDS+GP GQKYFPF+F++FSFILISNVSGLVPYSFTITSHLIQT
Sbjct:    5 PLEQFQILPLLSFGANLFDFSITNAMITTCVSLTFFIFLFYCLSFYGLNCFPTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISNVSGLVPYSFTITSHLIQT 118

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BLAST of mRNA_F-serratus_M_contig6958.18065.1 vs. uniprot
Match: A0A8F0FD27_9PHAE (ATP synthase subunit a n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FD27_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 5.210e-55
Identity = 87/114 (76.32%), Postives = 96/114 (84.21%), Query Frame = 1

Query:   25 PLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQT 366
            PLEQFQILP  S G+ LFDFSITNA I T L LG F  + YCLS Y F+CFP+RWQL++E  YLTTAGLIWDS+GP GQKYFPFIF IFSF+LISNVSGLVPYSFTITSHL+QT
Sbjct:    5 PLEQFQILPLLSIGVGLFDFSITNATIATSLALGLFFLIDYCLSAYGFNCFPSRWQLVLESFYLTTAGLIWDSVGPQGQKYFPFIFAIFSFVLISNVSGLVPYSFTITSHLVQT 118

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BLAST of mRNA_F-serratus_M_contig6958.18065.1 vs. uniprot
Match: ATP6_PYLLI (ATP synthase subunit a n=2 Tax=Pylaiella littoralis TaxID=2885 RepID=ATP6_PYLLI)

HSP 1 Score: 166 bits (420), Expect = 2.850e-49
Identity = 82/114 (71.93%), Postives = 94/114 (82.46%), Query Frame = 1

Query:   25 PLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQT 366
            PLEQF+ILP  SFG  LFDFSITNAM+TT + L FFLF+ YCL  Y  + FP RWQL++EGLY +TAGL+WDS+GP   K FPF+F+IFSFILISNV GLVPYSFTITSHLIQT
Sbjct:    5 PLEQFEILPLLSFGANLFDFSITNAMLTTCVSLSFFLFLFYCLFSYGLNSFPTRWQLVLEGLYTSTAGLVWDSVGPRRPKVFPFLFVIFSFILISNVQGLVPYSFTITSHLIQT 118

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BLAST of mRNA_F-serratus_M_contig6958.18065.1 vs. uniprot
Match: Q2TUB2_DICDH (ATP synthase subunit a n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUB2_DICDH)

HSP 1 Score: 143 bits (360), Expect = 3.420e-40
Identity = 70/114 (61.40%), Postives = 84/114 (73.68%), Query Frame = 1

Query:   25 PLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQT 366
            PLEQF I+P  SFG+   D SITNA++T+F+ LG     +  L ++  +  P RWQL+ EGLY   AGLIWDS+GP GQKYFPFIF IF F+L+SNVSGL PYSFT TSHLIQT
Sbjct:    6 PLEQFSIIPILSFGVLFLDISITNAVLTSFVSLGAIWSFYSMLVIFDLTIVPTRWQLIFEGLYEVAAGLIWDSVGPRGQKYFPFIFTIFFFVLVSNVSGLAPYSFTTTSHLIQT 119

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BLAST of mRNA_F-serratus_M_contig6958.18065.1 vs. uniprot
Match: A0A4Y5T8Z6_9PHAE (ATP synthase subunit a n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8Z6_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 5.470e-39
Identity = 69/114 (60.53%), Postives = 85/114 (74.56%), Query Frame = 1

Query:   25 PLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQT 366
            PLEQF ILP  S  +   DFSITNA++T+ + LG    +++ LSV+  +  P RWQL++E LY T AGLIWDS+G  GQKYFPFIF IF F+L+SNVSGL PYSFT TSHL+QT
Sbjct:    6 PLEQFSILPLLSLSVTFIDFSITNAVLTSLISLGSAWCLYFLLSVFGLTIVPVRWQLILESLYETAAGLIWDSVGARGQKYFPFIFSIFLFVLLSNVSGLAPYSFTTTSHLVQT 119

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig6958.18065.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig6958.18065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A343C631_FUCDI	4.600e-73	100.00	ATP synthase subunit a n=3 Tax=Fucus TaxID=3011 Re...	[more]
A0A0U1WNN5_SARFS	9.770e-58	84.21	ATP synthase subunit a n=24 Tax=Sargassaceae TaxID...	[more]
D2YYC2_SCYLO	1.510e-57	76.32	F-ATPase protein 6 (Fragment) n=1 Tax=Scytosiphon ...	[more]
A0A089MYN0_PETFA	5.590e-57	79.82	ATP synthase subunit a n=18 Tax=Ectocarpales TaxID...	[more]
A0A1I9LW45_9PHAE	4.540e-56	77.59	ATP synthase subunit a n=1 Tax=Pleurocladia lacust...	[more]
E6ZES4_ECTSI	1.830e-55	77.19	ATP synthase subunit a n=65 Tax=Phaeophyceae TaxID...	[more]
A0A8F0FD27_9PHAE	5.210e-55	76.32	ATP synthase subunit a n=1 Tax=Analipus japonicus ...	[more]
ATP6_PYLLI	2.850e-49	71.93	ATP synthase subunit a n=2 Tax=Pylaiella littorali...	[more]
Q2TUB2_DICDH	3.420e-40	61.40	ATP synthase subunit a n=1 Tax=Dictyota dichotoma ...	[more]
A0A4Y5T8Z6_9PHAE	5.470e-39	60.53	ATP synthase subunit a n=1 Tax=Dictyopteris divari...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig6958	contig	F-serratus_M_contig6958:6057..6422 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Seed ortholog score	91.7
Seed ortholog evalue	2.6e-16
Seed eggNOG ortholog	70448.Q0P3G1
Preferred name	atp6
KEGG ko	ko:K02126
KEGG TC	3.A.2.1
KEGG Pathway	ko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG Module	M00158
Hectar predicted targeting category	signal anchor
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.	ATP synthase A chain
EggNOG OGs	34IHJ@3041,37J5M@33090,COG0356@1,KOG4665@2759
COG Functional cat.	C
Best tax level	Chlorophyta
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03029
Exons	1
Model size	366
Cds size	366
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932124.7794523-CDS-F-serratus_M_contig6958:6056..6422	1622932124.7794523-CDS-F-serratus_M_contig6958:6056..6422	Fucus serratus male	CDS	F-serratus_M_contig6958 6057..6422 -
1690964159.796419-CDS-F-serratus_M_contig6958:6056..6422	1690964159.796419-CDS-F-serratus_M_contig6958:6056..6422	Fucus serratus male	CDS	F-serratus_M_contig6958 6057..6422 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig6958.18065.1	prot_F-serratus_M_contig6958.18065.1	Fucus serratus male	polypeptide	F-serratus_M_contig6958 6057..6422 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig6958:6057..6422-
coding sequence from alignment at F-serratus_M_contig6958:6057..6422-

protein sequence of mRNA_F-serratus_M_contig6958.18065.1

>prot_F-serratus_M_contig6958.18065.1 ID=prot_F-serratus_M_contig6958.18065.1|Name=mRNA_F-serratus_M_contig6958.18065.1|organism=Fucus serratus male|type=polypeptide|length=122bp
MNLKATSIPLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYC
LSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFI
LISNVSGLVPYSFTITSHLIQT

mRNA from alignment at F-serratus_M_contig6958:6057..6422-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig6958.18065.1 ID=mRNA_F-serratus_M_contig6958.18065.1|Name=mRNA_F-serratus_M_contig6958.18065.1|organism=Fucus serratus male|type=mRNA|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig6958:6057..6422- (Fucus serratus male)
ATGAACCTAAAAGCAACCAGTATTCCCTTAGAACAATTTCAAATACTTCC
ATTTTTTAGTTTTGGTATCGCTTTATTTGATTTTTCGATAACCAACGCAA
TGATTACAACTTTTCTTGGTTTAGGGTTTTTCTTGTTTGTCCATTATTGT
CTTTCAGTTTATAGTTTTAGTTGTTTTCCTAACCGTTGGCAATTGCTTAT
TGAAGGACTCTATTTAACTACGGCAGGTCTAATTTGGGACAGTATTGGTC
CAGCGGGTCAAAAATATTTCCCATTCATTTTTATGATCTTTAGTTTTATT
TTGATTTCTAATGTTTCAGGTTTAGTACCTTACTCGTTTACTATAACTAG
TCATTTAATTCAAACA

Coding sequence (CDS) from alignment at F-serratus_M_contig6958:6057..6422-

>mRNA_F-serratus_M_contig6958.18065.1 ID=mRNA_F-serratus_M_contig6958.18065.1|Name=mRNA_F-serratus_M_contig6958.18065.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig6958:6057..6422- (Fucus serratus male)
ATGAACCTAAAAGCAACCAGTATTCCCTTAGAACAATTTCAAATACTTCC
ATTTTTTAGTTTTGGTATCGCTTTATTTGATTTTTCGATAACCAACGCAA
TGATTACAACTTTTCTTGGTTTAGGGTTTTTCTTGTTTGTCCATTATTGT
CTTTCAGTTTATAGTTTTAGTTGTTTTCCTAACCGTTGGCAATTGCTTAT
TGAAGGACTCTATTTAACTACGGCAGGTCTAATTTGGGACAGTATTGGTC
CAGCGGGTCAAAAATATTTCCCATTCATTTTTATGATCTTTAGTTTTATT
TTGATTTCTAATGTTTCAGGTTTAGTACCTTACTCGTTTACTATAACTAG
TCATTTAATTCAAACAATGAACCTAAAAGCAACCAGTATTCCCTTAGAAC
AATTTCAAATACTTCCATTTTTTAGTTTTGGTATCGCTTTATTTGATTTT
TCGATAACCAACGCAATGATTACAACTTTTCTTGGTTTAGGGTTTTTCTT
GTTTGTCCATTATTGTCTTTCAGTTTATAGTTTTAGTTGTTTTCCTAACC
GTTGGCAATTGCTTATTGAAGGACTCTATTTAACTACGGCAGGTCTAATT
TGGGACAGTATTGGTCCAGCGGGTCAAAAATATTTCCCATTCATTTTTAT
GATCTTTAGTTTTATTTTGATTTCTAATGTTTCAGGTTTAGTACCTTACT
CGTTTACTATAACTAGTCATTTAATTCAAACA