mRNA_F-serratus_M_contig6945.18054.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6945.18054.1
Unique NamemRNA_F-serratus_M_contig6945.18054.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6945.18054.1 vs. uniprot
Match: D8LPV7_ECTSI (PX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPV7_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 3.620e-83
Identity = 165/264 (62.50%), Postives = 185/264 (70.08%), Query Frame = 1 
Query:    4 LTVDGIEVHATEEGPPNTRGS---SGTLRVDIGSHECRVGYRGATRPGRYFYSCVVDGVVMPELNETVGDGGDGDDDAIPRAGEVFVDSVAATKDSFGAAFLEFRVVTRRRGAGRERRDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDHSYAVVWRRFTAFRSLHFDILNMLRGSHLLDSLLRCQATKCINPLVNQMGEAFVERRRMVLQTYLRRV--VPKARASVNLMGFLGLHPITGTPLPWAASTP--PIRNAPTERRG 774
            +TVDGI V   E  PP   GS   + TL+V +GSH+C VGYR + RPGRYFYSC++DGVVMPELN+TVGD   GDD+ +P  GEVF+DS+   KD FG  FLEFRVVT R   G  RRDS  XXXXXXXXXXXXX                 +AVVWRRF+AFRSLH D+  ML GSHLLDSL    A KCINPLVNQMG AF+E RR VLQ YLRR+  VPKARASVNLMGFLGLHPITG PLPWAA  P  P + AP +  G
Sbjct:   49 VTVDGIAVQGAESAPPPGGGSLKKTVTLKVRVGSHDCWVGYRASARPGRYFYSCIIDGVVMPELNDTVGD--TGDDEGVPLPGEVFIDSIEPAKDRFGTEFLEFRVVTLR---GTRRRDSCGXXXXXXXXXXXXXGCY--------------HAVVWRRFSAFRSLHSDVTAMLWGSHLLDSLPPLPA-KCINPLVNQMGAAFLESRREVLQAYLRRLLEVPKARASVNLMGFLGLHPITGYPLPWAALAPSTPRQAAPLDDEG 292
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6945.18054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPV7_ECTSI3.620e-8362.50PX domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6945contigF-serratus_M_contig6945:10431..13501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.8
Seed ortholog evalue6.9e-67
Seed eggNOG ortholog2880.D8LPV7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PX domain
EggNOG OGs2D5A9@1,2SXWF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size775
Cds size774
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6945.18054.1prot_F-serratus_M_contig6945.18054.1Fucus serratus malepolypeptideF-serratus_M_contig6945 10431..13501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932122.5605185-CDS-F-serratus_M_contig6945:10430..105821622932122.5605185-CDS-F-serratus_M_contig6945:10430..10582Fucus serratus maleCDSF-serratus_M_contig6945 10431..10582 +
1690964158.580196-CDS-F-serratus_M_contig6945:10430..105821690964158.580196-CDS-F-serratus_M_contig6945:10430..10582Fucus serratus maleCDSF-serratus_M_contig6945 10431..10582 +
1622932122.5738778-CDS-F-serratus_M_contig6945:11064..111931622932122.5738778-CDS-F-serratus_M_contig6945:11064..11193Fucus serratus maleCDSF-serratus_M_contig6945 11065..11193 +
1690964158.5930061-CDS-F-serratus_M_contig6945:11064..111931690964158.5930061-CDS-F-serratus_M_contig6945:11064..11193Fucus serratus maleCDSF-serratus_M_contig6945 11065..11193 +
1622932122.5857575-CDS-F-serratus_M_contig6945:12193..124711622932122.5857575-CDS-F-serratus_M_contig6945:12193..12471Fucus serratus maleCDSF-serratus_M_contig6945 12194..12471 +
1690964158.6119235-CDS-F-serratus_M_contig6945:12193..124711690964158.6119235-CDS-F-serratus_M_contig6945:12193..12471Fucus serratus maleCDSF-serratus_M_contig6945 12194..12471 +
1622932122.606005-CDS-F-serratus_M_contig6945:12912..130021622932122.606005-CDS-F-serratus_M_contig6945:12912..13002Fucus serratus maleCDSF-serratus_M_contig6945 12913..13002 +
1690964158.6224942-CDS-F-serratus_M_contig6945:12912..130021690964158.6224942-CDS-F-serratus_M_contig6945:12912..13002Fucus serratus maleCDSF-serratus_M_contig6945 12913..13002 +
1622932122.622326-CDS-F-serratus_M_contig6945:13376..135011622932122.622326-CDS-F-serratus_M_contig6945:13376..13501Fucus serratus maleCDSF-serratus_M_contig6945 13377..13501 +
1690964158.6336386-CDS-F-serratus_M_contig6945:13376..135011690964158.6336386-CDS-F-serratus_M_contig6945:13376..13501Fucus serratus maleCDSF-serratus_M_contig6945 13377..13501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6945.18054.1

>prot_F-serratus_M_contig6945.18054.1 ID=prot_F-serratus_M_contig6945.18054.1|Name=mRNA_F-serratus_M_contig6945.18054.1|organism=Fucus serratus male|type=polypeptide|length=258bp
VLTVDGIEVHATEEGPPNTRGSSGTLRVDIGSHECRVGYRGATRPGRYFY
SCVVDGVVMPELNETVGDGGDGDDDAIPRAGEVFVDSVAATKDSFGAAFL
EFRVVTRRRGAGRERRDSRTRSSIRGGLSDKGGGVSGGVGPNGGAGDDHS
YAVVWRRFTAFRSLHFDILNMLRGSHLLDSLLRCQATKCINPLVNQMGEA
FVERRRMVLQTYLRRVVPKARASVNLMGFLGLHPITGTPLPWAASTPPIR
NAPTERRG
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mRNA from alignment at F-serratus_M_contig6945:10431..13501+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6945.18054.1 ID=mRNA_F-serratus_M_contig6945.18054.1|Name=mRNA_F-serratus_M_contig6945.18054.1|organism=Fucus serratus male|type=mRNA|length=3071bp|location=Sequence derived from alignment at F-serratus_M_contig6945:10431..13501+ (Fucus serratus male)
GTTTTGACTGTGGATGGCATCGAGGTCCATGCCACGGAGGAAGGGCCTCC
AAACACGAGGGGCTCGTCGGGAACCCTCCGTGTTGACATCGGTAGCCACG
AATGCCGCGTGGGGTACAGGGGCGCAACACGCCCAGGGCGGTATTTCTAC
AGGTGTGTGTTTGCCAGTACTTCGATCCGTGAGATGGAATCGAAGCCGAG
CCCCTCAAGACATTTTAAAACATAACACTTGTACGGAATTTCTTGCTCGA
TGCCGCTTGCACGTGGCCTGCCAGACGGGTCGAAATCGGGATCAATGGAG
CCCGCCACCTTTTGTCGTCGACGGGTCGCCCCCCCGTCCCCCACCCTAGC
GCCCTACAACTTAGTACGCACATTCATACGATAGAATCACAGTCCCTAGA
AGAACCGCGCACGCCTATGCACATGCACCTTGAATAGAAAGCCATCGGCG
TTCCTTCTCCCTACACCTCTCCTTCCTCGTGCTCCCCTCCTTACTTCAAT
TCTCTTGCTGTAGTTTGGCCCTCGGCAGTCATAGCTGTGTCTTTGTCGCT
AACCTTGGCCCTCGATTCACGCTCTCCCACTTGCTTCCCTGCGCCTCTTA
CCGCTCGAAAATCGGCGCGGGCGCGGGCGCACAGCTGCGTGGTGGACGGC
GTCGTGATGCCGGAGCTGAACGAGACCGTGGGCGACGGAGGCGACGGGGA
CGACGACGCCATCCCTCGGGCTGGAGAGGTCTTTGTCGACAGCGTGGCGG
CCACAAAGGACAGGTGATGCTTGCTCAGTCGACCCGGTGGTTCGGTGATT
GTTGGGGGGTTTTTCGCTTTTGAAGCCTTTCTGTAAAACGTAAACCCTGC
TCCGTTGTTTTGGTCCGTCCCGAGTCGTTCGCTCTCTTCGCCCCCCACCC
CGGGCGCGTCAGCTAATCGCGCGCCCGTGGAACTCATGCCGTTCGGATGG
GGGGTAGCCGATGGGCTTCTTTCTTTTTTCACGGGGGGAGGGATGCAGAT
ATGCGAAATGTCCATAGTGCTTCTTTGGTCGCTACAGGAATGACTCCTAG
TCAAACGAACCAGGGAGATGAATCCGTTTTAAAATACTGTGCACACCCGC
TCGGTTGAGCCTGCGCTCTCTCCTGTCGTAGTTGCCGGTTTCACGGAACG
GTCGTGTTAAACGAAAATATTACATCAAGTACAATCTCTGTAGAAAAAAC
GCCTCCACTGCGAAATCGACACACGCGCGAGGGTTGCGCGTCACTCCCGG
TGGATTCTAGATGCCCCCCTGTTCCCACCGCGGTACGCCCTCCAACAACG
AAACCCCACGGCTGAGTATTTATGCCACCGGTTACATTCTGTTGCGCCTT
TGCAAGGCTCTTGAGCTGTACTGTAGAGAGGTCGCTTTCGCGGTATAAGA
ACTAAGCGCCGCTACGCTACCCCGGATGATGTGAACGAGGAGATCTATAG
AAGCAACGATCTTCGGGCTTTTCTTTCTGTTGTGCCTGAGCGCACCGTTT
GTCATTGATTGCTGGAAGCCTTCCCAGCCTGTTGGACTCGAGGAACAAGC
GTTATGTCTTGCCCCCTCTGCCATAGTCCATGCTTGCCACGAGACACCTC
CGCCCCCCTCCTTGATTCCCCTGAGTCTCGGCAAACTTGTGGCTCACTGG
CCGAATGAAGGGCTCTCGCTGGATGAAAAATCATGAACGCCGTCGATATT
ATCGTGGAAACCTCTTCCCGTTTGTGGTTGTATCTTCTTCCGGTTTCGAT
GTGTCCTCGACAGCTTCGGCGCCGCGTTTTTGGAGTTTCGTGTGGTGACT
CGAAGACGCGGCGCCGGTAGAGAAAGGCGGGATTCGAGGACGAGAAGTTC
TATTCGGGGCGGCCTGAGTGACAAGGGAGGCGGTGTGAGTGGCGGGGTTG
GACCCAACGGCGGCGCGGGAGACGATCACTCGTACGCGGTAGTGTGGAGG
CGCTTTACGGCGTTCCGCTCGCTGCACTTCGACATCCTTAACATGCTGAG
GGGGTCTCACCTTCTGGATAGCCTCCTCCGCTGCCAGGCAAGTCGACCCC
CCCCCCCCCCCCCCCCTTCCCTCGACTATGATGATCGATGTGCATAGAAT
CGAGTCGGTCGGGTTTCCACAGTTTTTTTTTATTGTTGGTTGTAAAGGGT
GATGGCATCTGCTGCGACCCGATCAGGCGATCGGAGGCGGTGCTCGGCCA
TCTGTACAGTATGTCGATCGTCTGTGAACACTTCAACTTTTTACATATAT
GCTGCGGTTTTCGTGTCTGGAATGACTGGCGTACGTTGGAAATGCTTTCG
AAAGCGCTGGAAACGTTTGGATGGTTGACGATAGTGACCCCGAGGGGAGG
GGTTGCCTGTGTCGGCCGGAGCGCATTGGTAGCCGTTCACTGTTTGTCTT
TTCCCGCGTTGCCATTGGAATTGAGTTTTTTTATATCAATTTTACCCCCA
CAACACCGACGCGTGCCCCTTTCTCCTTACAGCGAAGTGCATCAACCCTC
TGGTGAACCAGATGGGAGAGGCGTTCGTAGAGAGACGCAGGATGGTGCTG
CAGACGTATCTCAGGCGAGTAGGTTGGCAGCTACCCGTTGCTTGTGCATG
TGCAACCTGGAGTTCTTCCTCGGAAATGATACCCAATTGCCCCCCCCCCC
CCCCCCCGCCCCTTCTTCTGTACTTGCGAAGATCGGAGATTTCGGAGATT
TCTACCCACGGCGACAGGGATGCTGTGTCGCAGCCGCGCCAGCAATGAAT
GCTAGACCAACGAGCGCAGCACGGCCTTGTCTGACTCTCGCAGTCGTATT
AATAGTATTATAGTGTGATTCCCTACCTCAGCCCTTGCGCCGCTTGCAAG
TAAAAGAGTTAACGTATGACTCACACTTCATAACACACTCGCGTTCTACG
AAAAATAATAATTCCTTCGACGACTTCTTCAGGCGCTTGCTCGAAGTGCC
CAAGGCGAGAGCTTCCGTCAATCTCATGGGTTTTCTGGGGCTGCACCCCA
TCACGGGAACCCCTCTCCCTTGGGCGGCTTCGACTCCTCCGATTCGCAAC
GCCCCCACCGAAAGGCGAGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6945:10431..13501+

>mRNA_F-serratus_M_contig6945.18054.1 ID=mRNA_F-serratus_M_contig6945.18054.1|Name=mRNA_F-serratus_M_contig6945.18054.1|organism=Fucus serratus male|type=CDS|length=1548bp|location=Sequence derived from alignment at F-serratus_M_contig6945:10431..13501+ (Fucus serratus male)
GTTTTGACTGTGGATGGCATCGAGGTCCATGCCACGGAGGAAGGGCCTCC
AAACACGAGGGGCTCGTCGGGAACCCTCCGTGTTGACATCGGTAGCCACG
AATGCCGCGTGGGGTACAGGGGCGCAACACGCCCAGGGCGGTATTTCTAC
AGGTTTTGACTGTGGATGGCATCGAGGTCCATGCCACGGAGGAAGGGCCT
CCAAACACGAGGGGCTCGTCGGGAACCCTCCGTGTTGACATCGGTAGCCA
CGAATGCCGCGTGGGGTACAGGGGCGCAACACGCCCAGGGCGGTATTTCT
ACAGCTGCGTGGTGGACGGCGTCGTGATGCCGGAGCTGAACGAGACCGTG
GGCGACGGAGGCGACGGGGACGACGACGCCATCCCTCGGGCTGGAGAGGT
CTTTGTCGACAGCGTGGCGGCCACAAAGGACAGCTGCGTGGTGGACGGCG
TCGTGATGCCGGAGCTGAACGAGACCGTGGGCGACGGAGGCGACGGGGAC
GACGACGCCATCCCTCGGGCTGGAGAGGTCTTTGTCGACAGCGTGGCGGC
CACAAAGGACAGCTTCGGCGCCGCGTTTTTGGAGTTTCGTGTGGTGACTC
GAAGACGCGGCGCCGGTAGAGAAAGGCGGGATTCGAGGACGAGAAGTTCT
ATTCGGGGCGGCCTGAGTGACAAGGGAGGCGGTGTGAGTGGCGGGGTTGG
ACCCAACGGCGGCGCGGGAGACGATCACTCGTACGCGGTAGTGTGGAGGC
GCTTTACGGCGTTCCGCTCGCTGCACTTCGACATCCTTAACATGCTGAGG
GGGTCTCACCTTCTGGATAGCCTCCTCCGCTGCCAGGCAACTTCGGCGCC
GCGTTTTTGGAGTTTCGTGTGGTGACTCGAAGACGCGGCGCCGGTAGAGA
AAGGCGGGATTCGAGGACGAGAAGTTCTATTCGGGGCGGCCTGAGTGACA
AGGGAGGCGGTGTGAGTGGCGGGGTTGGACCCAACGGCGGCGCGGGAGAC
GATCACTCGTACGCGGTAGTGTGGAGGCGCTTTACGGCGTTCCGCTCGCT
GCACTTCGACATCCTTAACATGCTGAGGGGGTCTCACCTTCTGGATAGCC
TCCTCCGCTGCCAGGCAACGAAGTGCATCAACCCTCTGGTGAACCAGATG
GGAGAGGCGTTCGTAGAGAGACGCAGGATGGTGCTGCAGACGTATCTCAG
GCGAGTAGCGAAGTGCATCAACCCTCTGGTGAACCAGATGGGAGAGGCGT
TCGTAGAGAGACGCAGGATGGTGCTGCAGACGTATCTCAGGCGAGTAGTG
CCCAAGGCGAGAGCTTCCGTCAATCTCATGGGTTTTCTGGGGCTGCACCC
CATCACGGGAACCCCTCTCCCTTGGGCGGCTTCGACTCCTCCGATTCGCA
ACGCCCCCACCGAAAGGCGAGGATGCCCAAGGCGAGAGCTTCCGTCAATC
TCATGGGTTTTCTGGGGCTGCACCCCATCACGGGAACCCCTCTCCCTTGG
GCGGCTTCGACTCCTCCGATTCGCAACGCCCCCACCGAAAGGCGAGGA
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