mRNA_F-serratus_M_contig694.18048.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig694.18048.1
Unique NamemRNA_F-serratus_M_contig694.18048.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig694.18048.1 vs. uniprot
Match: D7G5J3_ECTSI (PPIase cyclophilin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5J3_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 7.240e-29
Identity = 59/73 (80.82%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:  544 ARPQAEVTDKVFFDVEINGEPAGRVIMGLYGGIVPKTAANFVALCKGDPA-KRQPFGYKGSRFHRVIPGFMVQ 759
            A PQA VTDKVFFDVEI+G PAGRVIMGLYG +VP+TA NFV LCKGDP  +RQPFGYKGS FHR IPGFMVQ
Sbjct:  177 AIPQAAVTDKVFFDVEIDGLPAGRVIMGLYGAVVPRTAKNFVGLCKGDPKQRRQPFGYKGSIFHRAIPGFMVQ 249
[Close]
BLAST of mRNA_F-serratus_M_contig694.18048.1 vs. uniprot
Match: A0A7S0FSB4_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FSB4_9STRA)

HSP 1 Score: 104 bits (259), Expect = 8.240e-25
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:  550 PQAEVTDKVFFDVEINGEPAGRVIMGLYGGIVPKTAANFVALCKGDPAKRQPFGYKGSRFHRVIPGFMVQ 759
            PQAEVT KVFFDV ING+  GR++MGLYGG+VPKT  NF  LC+G     Q  GY+GS FHRVIPGFM+Q
Sbjct:   29 PQAEVTSKVFFDVVINGKETGRIVMGLYGGVVPKTVENFSKLCEGTTYAGQRLGYEGSGFHRVIPGFMIQ 98
[Close]
BLAST of mRNA_F-serratus_M_contig694.18048.1 vs. uniprot
Match: A0A255QRX1_9BACT (Peptidyl-prolyl cis-trans isomerase n=5 Tax=Pirellulaceae TaxID=2691357 RepID=A0A255QRX1_9BACT)

HSP 1 Score: 101 bits (251), Expect = 1.700e-22
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:  553 QAEVTDKVFFDVEINGEPAGRVIMGLYGGIVPKTAANFVALCKGDPA---KRQPFGYKGSRFHRVIPGFMVQ 759
            +A VTDKVFFD+EINGEPAGR++MGL+G  VPKTA NF ALC G+      ++P  YKGS+FHRVIP FM+Q
Sbjct:   28 EANVTDKVFFDIEINGEPAGRIVMGLFGDDVPKTAENFRALCTGEKGVGKMKKPLHYKGSKFHRVIPEFMLQ 99
[Close]
BLAST of mRNA_F-serratus_M_contig694.18048.1 vs. uniprot
Match: UPI00200F4614 (peptidylprolyl isomerase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00200F4614)

HSP 1 Score: 97.1 bits (240), Expect = 6.910e-22
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:  559 EVTDKVFFDVEINGEPAGRVIMGLYGGIVPKTAANFVALCKGDPAKRQPFGYKGSRFHRVIPGFMVQ 759
            EVT KVFFDVEI+G+PAGR++MGL+G  VPKTA NF ALC G     +P  YKGS FHR+IP FM+Q
Sbjct:   35 EVTHKVFFDVEIDGKPAGRIVMGLFGKAVPKTAENFRALCTGIGKSGKPLHYKGSSFHRIIPSFMIQ 101
[Close]
BLAST of mRNA_F-serratus_M_contig694.18048.1 vs. uniprot
Match: A0A2S8GAG5_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8GAG5_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 1.520e-21
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:  553 QAEVTDKVFFDVEINGEPAGRVIMGLYGGIVPKTAANFVALCKGDPAKRQ---PFGYKGSRFHRVIPGFMVQ 759
            Q +VTDKVFFD+ ING+PAGR+++GL+G  VPKTAANF ALC G+  K +   P  YKGS FHRVIP FM+Q
Sbjct:   25 QGKVTDKVFFDIAINGQPAGRIVIGLFGDDVPKTAANFRALCTGEKGKGRAGVPLSYKGSSFHRVIPQFMLQ 96
[Close]
BLAST of mRNA_F-serratus_M_contig694.18048.1 vs. uniprot
Match: A0A7S2U584_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U584_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 4.510e-21
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:  541 SARPQAEVTDKVFFDVEINGEPAGRVIMGLYGGIVPKTAANFVALC---KGDPAKRQPFGYKGSRFHRVIPGFMVQ 759
            SA+ + +VT+KVFFD+EI GE AGR++MGLYG  VPKTA NF ALC   KG   K +P  YKGS FHR+IP FM+Q
Sbjct:   33 SAKKKPKVTNKVFFDIEIGGEKAGRIVMGLYGKTVPKTAENFRALCTGEKGTGKKGKPLHYKGSSFHRIIPQFMIQ 108
[Close]
BLAST of mRNA_F-serratus_M_contig694.18048.1 vs. uniprot
Match: A0A7S2WPF7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPF7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.560e-21
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:  553 QAEVTDKVFFDVEINGEPAGRVIMGLYGGIVPKTAANFVALCKGDPAKRQ---PFGYKGSRFHRVIPGFMVQ 759
            QA+VT KVFFDVEI G+PAGRV+MGL+G +VPKT  NF AL  G+  K Q   P  +KGS+FHRVIP FM+Q
Sbjct:   29 QAKVTHKVFFDVEIGGQPAGRVVMGLFGDVVPKTVENFRALATGEKGKGQSGKPLHFKGSKFHRVIPNFMIQ 100
[Close]
BLAST of mRNA_F-serratus_M_contig694.18048.1 vs. uniprot
Match: A0A1Z5JER6_FISSO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JER6_FISSO)

HSP 1 Score: 97.1 bits (240), Expect = 8.610e-21
Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:  547 RPQAEVTDKVFFDVEINGEPAGRVIMGLYGGIVPKTAANFVALCKGDPAKRQPFGYKGSRFHRVIPGFMVQVRETYYS 780
            +  AE+TD VFFDV I G+PAGR+ MGLYG +VPKT  NF  LC G P     FGY+GS FHR+IPGFM Q   T ++
Sbjct:   50 KTDAEITDTVFFDVSIGGQPAGRIEMGLYGNVVPKTTENFKQLCSGKPG----FGYEGSIFHRIIPGFMCQGDFTNFN 123
[Close]
BLAST of mRNA_F-serratus_M_contig694.18048.1 vs. uniprot
Match: A0A0K9RAV5_SPIOL (Peptidyl-prolyl cis-trans isomerase n=4 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0K9RAV5_SPIOL)

HSP 1 Score: 96.7 bits (239), Expect = 1.000e-20
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:  541 SARPQAEVTDKVFFDVEINGEPAGRVIMGLYGGIVPKTAANFVALCKGDPA---KRQPFGYKGSRFHRVIPGFMVQ 759
            S+    EVT+KVFFDVEI+G+PAGR++MGL+G  VPKTA NF ALC G+       +P  YKGS+FHR+IP FM+Q
Sbjct:   30 SSEDLKEVTNKVFFDVEIDGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQ 105
[Close]
BLAST of mRNA_F-serratus_M_contig694.18048.1 vs. uniprot
Match: A0A5B8MCT9_9CHLO (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MCT9_9CHLO)

HSP 1 Score: 97.1 bits (240), Expect = 1.220e-20
Identity = 46/73 (63.01%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:  550 PQAEVTDKVFFDVEINGEPAGRVIMGLYGGIVPKTAANFVALC---KGDPAKRQPFGYKGSRFHRVIPGFMVQ 759
            PQAE+T KV+FDVEI G+ AGR++MGLYG +VPKTA NF ALC   KG   K +P  YK + FHR+IP FMVQ
Sbjct:   57 PQAEITTKVYFDVEIGGDKAGRIVMGLYGNVVPKTAENFRALCTCEKGKGTKGKPLCYKDTIFHRIIPQFMVQ 129
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig694.18048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5J3_ECTSI7.240e-2980.82PPIase cyclophilin-type domain-containing protein ... [more]
A0A7S0FSB4_9STRA8.240e-2567.14Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A255QRX1_9BACT1.700e-2265.28Peptidyl-prolyl cis-trans isomerase n=5 Tax=Pirell... [more]
UPI00200F46146.910e-2265.67peptidylprolyl isomerase n=1 Tax=Escherichia coli ... [more]
A0A2S8GAG5_9BACT1.520e-2163.89Peptidyl-prolyl cis-trans isomerase n=1 Tax=Blasto... [more]
A0A7S2U584_9EUKA4.510e-2161.84Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lothar... [more]
A0A7S2WPF7_9STRA6.560e-2163.89Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizoc... [more]
A0A1Z5JER6_FISSO8.610e-2157.69Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fistul... [more]
A0A0K9RAV5_SPIOL1.000e-2059.21Peptidyl-prolyl cis-trans isomerase n=4 Tax=Chenop... [more]
A0A5B8MCT9_9CHLO1.220e-2063.01Peptidyl-prolyl cis-trans isomerase n=3 Tax=Chloro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig694contigF-serratus_M_contig694:257035..267141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue7.8e-26
Seed eggNOG ortholog2880.D7G5J3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0880@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size785
Cds size783
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig694.18048.1prot_F-serratus_M_contig694.18048.1Fucus serratus malepolypeptideF-serratus_M_contig694 257035..267141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932119.9384236-CDS-F-serratus_M_contig694:257034..2571271622932119.9384236-CDS-F-serratus_M_contig694:257034..257127Fucus serratus maleCDSF-serratus_M_contig694 257035..257127 -
1690964157.1253304-CDS-F-serratus_M_contig694:257034..2571271690964157.1253304-CDS-F-serratus_M_contig694:257034..257127Fucus serratus maleCDSF-serratus_M_contig694 257035..257127 -
1622932119.9579544-CDS-F-serratus_M_contig694:260312..2604471622932119.9579544-CDS-F-serratus_M_contig694:260312..260447Fucus serratus maleCDSF-serratus_M_contig694 260313..260447 -
1690964157.13931-CDS-F-serratus_M_contig694:260312..2604471690964157.13931-CDS-F-serratus_M_contig694:260312..260447Fucus serratus maleCDSF-serratus_M_contig694 260313..260447 -
1622932119.9717543-CDS-F-serratus_M_contig694:261760..2618051622932119.9717543-CDS-F-serratus_M_contig694:261760..261805Fucus serratus maleCDSF-serratus_M_contig694 261761..261805 -
1690964157.1523588-CDS-F-serratus_M_contig694:261760..2618051690964157.1523588-CDS-F-serratus_M_contig694:261760..261805Fucus serratus maleCDSF-serratus_M_contig694 261761..261805 -
1622932119.986228-CDS-F-serratus_M_contig694:266631..2671411622932119.986228-CDS-F-serratus_M_contig694:266631..267141Fucus serratus maleCDSF-serratus_M_contig694 266632..267141 -
1690964157.1666067-CDS-F-serratus_M_contig694:266631..2671411690964157.1666067-CDS-F-serratus_M_contig694:266631..267141Fucus serratus maleCDSF-serratus_M_contig694 266632..267141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig694.18048.1

>prot_F-serratus_M_contig694.18048.1 ID=prot_F-serratus_M_contig694.18048.1|Name=mRNA_F-serratus_M_contig694.18048.1|organism=Fucus serratus male|type=polypeptide|length=261bp
KLSPSSLSIWLSHADHTTNHLCVPFCLISSVEMYMSSSRRGCARIVRAAN
RTASVNAVCCTHALPMPRPQGSLWIASSPMPGRWATTSVARAWFGSASGG
GFDAANRARGGVASGPGGGAPQPPPPPRPGRSSPALALVGGILLFGGGYI
GAQLLKGEGSSKQQKSAARDSSPEEEEEEESARPQAEVTDKVFFDVEING
EPAGRVIMGLYGGIVPKTAANFVALCKGDPAKRQPFGYKGSRFHRVIPGF
MVQVRETYYS*
back to top

mRNA from alignment at F-serratus_M_contig694:257035..267141-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig694.18048.1 ID=mRNA_F-serratus_M_contig694.18048.1|Name=mRNA_F-serratus_M_contig694.18048.1|organism=Fucus serratus male|type=mRNA|length=10107bp|location=Sequence derived from alignment at F-serratus_M_contig694:257035..267141- (Fucus serratus male)
AAATTGTCTCCTAGCTCACTTTCCATTTGGTTGTCTCACGCAGATCACAC
CACAAACCACCTGTGTGTTCCATTCTGTCTCATCTCCTCCGTAGAAATGT
ATATGTCTTCATCCCGACGTGGCTGTGCAAGGATTGTTCGAGCAGCAAAT
AGAACCGCCAGCGTCAACGCAGTCTGCTGTACCCACGCCCTGCCCATGCC
CAGGCCACAGGGTTCGCTATGGATTGCTTCGTCGCCAATGCCTGGGCGTT
GGGCAACAACTTCCGTGGCCCGTGCTTGGTTTGGGAGCGCTTCGGGTGGT
GGCTTCGACGCTGCTAACAGGGCCCGGGGTGGTGTAGCAAGTGGGCCGGG
CGGCGGGGCACCACAGCCGCCCCCTCCACCTCGACCTGGGCGAAGCAGCC
CGGCGCTGGCCTTGGTGGGGGGAATCCTGCTGTTTGGTGGAGGATACATT
GGAGCGCAGCTGCTGAAAGGGGAAGGGTCCTCGAAGCAGCAGAAAAGTGC
TGCGCGCGATGTGAGTAGGTAGGTTAGGACCGGTTGTGCGGATCCGTCCG
TCTCTTGTGGCACGTGAAGGGGCATATACCGTATGTATGTGTGGTCATCA
CATATACCTGTAGCAAGAGTAAGGATCAACCGGGTAAGGTTGCCAATCCT
GCTCATGAGGCTGAACAGGGAAAATGATTTCTTCCTTGTCCCCGTTCGCG
CCAGAGAATTTGGTCTCGTGAGACGGGTCCGGCAGTCCCGTCCCGTGTCA
CATGCTCATCTCCATACTCAGGCTTCGATTCCATACATGGGGAGGTTTTA
TAAATAATTATATTGTTCGCGCGAAGCGCGTAAAAACGTTGAAGAAGCAT
TTTCTTGTTAAAAAGAGAGAGAGAAGGACATATTGGGGTGTTACAAACTC
ACACACCGACGTACTGGTATGATTGTGGAGGTTTTACCCTCGTCATTGTC
GGTAGATGAAGACATTTTTTCCCCCTGACTGGGGAATGCTCAGAAGGTCT
AGGTACGTTCTGTTTTTTCTTCAAACACAAGCACAGCCCGGCAAGAATTC
GCTACGCAACTCTAACTATTTTTGTATATCACGTACAGTACAAAAATTAG
ATAAAACATTCATATTTTTCTTTAAACAACAGTCAACATGTGGTACCAAC
AACTGCTGTACATAGGTATACTGTATACAGTATGTATGTATGGTCATCAC
ATATAGCAGAGTATGGATCAACCAGGTATGGTTGCCAATCCTGCTCGTGG
TCAGCTGAACAGGGAAAATTAACATTCCCCTGTCCCCGTGCGTGCCTGAG
AATTTGGTCTCGCGAGACGGGTTCAGCCGTCCCGTCCCGCGTCAGCCTGC
TCATCTCCATACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCC
GAGTTCCGCGGCGGCGTCCATTTATGAAACCGCCATACGCCATCGGGTCA
GTCCCGAGTTTATCGGTTCACGCAATTGCGTACCGACGGCGTTCACTGCC
GAGAGTCCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTCCGAACGAG
TGCTGCCTTAGCAGGTCACTATGGACCAATTAATATTCGCCTCTCTTTCC
CACCCCCACTATCGGTATGAAGTACAGTGCGCGATGGTATGTATGTATGT
ATGTATGGTCATAACACATAGCAGAGTATGGATCGACCGGGTAAGGTTGC
CAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATAATATTCCCGTCCCCG
TGCGTGCCTGAGAATGTGATCTCGCGAGACGGATTCAGCCTTCCCGTCCC
ACGTCAGCCTGCCCATCTCCATACTCAGGCTGAATCTGGTGCTTACTTAC
GGGATTACTCCCGAGTTCCGCGGCGGCGTCCATTTATGAAACCGCCATAC
GCCATCGGGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCGTACCGACG
GCGTTCACTGCCGAGAGTTCGCCGGCACAGGGCCAGGAAACCTCAACGTA
GATCCAAACGGCTGCTGTCTTGGCAGGTCACCATGGACCAATTAATATTC
GCCTCTCTTTCCCACATCCACTATTATTGGTATGAAGTGGGCATGTTGAA
AGTACCGGTATGTATTAGTAATGTGTCATCAAGCTCTGTACTTGACTTGC
AGATGGTGATACAGCTTCTGCTGTGTCGCCAACAAGGAGAGGAGCTCCAC
GGAGAGACGTATGGAATGCGGAATCGCCGACGAAACATTTATGCCTCCCT
TGAACTATGAATGATTTGGCTCGGCTGTTTAGGGACAACCACCGCCGTGG
GTACATTGCTGAGAAAATACTGGCTTGACCTCAACGACAGGTCACAGGCT
CCAAGAAACGCAACCAACCACACACTATAGTGGGGATGTAGCGCCACACT
AGCATGGTTCATCGATGCTGCCGCCGGCGCGTTCTTGTGTGTGAGCTGCC
TATATATTTTCAAGTGAAAAGGCTCCACCGATGGTAGACCTGTAAGAGAG
CAATCTACAGAAGCTGGGTGCTATTGACGATCAATCTCATGGGACTGTGT
GAAATGCACTGCGTCCACCAATAATCCTTATAAAATCCCTACAAAAATCG
TCTTTCATTGGACAAATCTGACAGTATTTCCCTGCCAGGGAGATCTGTGA
TTGGCCGGTCCTTATAAAAATATCCCTATCTATGGGGGTGGTGCCCATAC
TCAGGGCGAATATGGTGCTTACTTACAGGATTCCTCCCAAGTTCCGCGGC
GGTGTCCATTTATTTGCCCCCCGATCCCCGTTTTCTGCTTTTTGTACCCC
AAAATCCCGACTGTTAGAAACCTAAAATAAAATGCGGTCGAGTATCTGCG
TCAATGAAATGGCGCTATTTGAGCCATTTCTAGCTTTTGTCAAAGGCAGA
GCAGTCTGTCACAGCAATTGCTAAGAAGGAGGTTTGCCCACGAAACGAGA
TAGCGGACCCACCAGGTATGGCTATGCTCTCCATTGACAGACGTGGATTT
GCTGGAGGTTTGGTTTATTTTCGTCGACTGTGTGGTATGCAATCGTCGCT
GGTGAGATTTGTTCCGAATCGAGCGACTGCCTGGGGTCCGCTGAAGAGGC
AGGCAACGATCGAGACTCTGTGTTTCAGCCCTGCGTTCTCCTGAGCTGAG
TGCTCAAGTTAGACGACGTAACTCTTCTACATCTTATAGCCAACGGTATT
GTGAACGAGCTGCATCGGTGCGGTGGCCGAAACGTTTTCTGGTGGGCTGA
GGCCGGCGGTCGTGCTGTTTGCTCATCGGATGTGTCAAATCTGGTGCAAA
GCCTGTCTCAGCCGCTTAAACGCAGTTCACTCACGCCACACGAAGCACCC
GAGCTCACCAAATTGCAGGCAGAGTCGTATGTGGGAGTAAGGGAGACACT
GTCGCTGGAATTAGCGCACGGGGCAGCGCTGCGATGGAGAAATCGTTTCT
TCAACTGGTATTTGAAGTCTTGTGCGGCGCCACAGCGACCCAAGTTCAAC
ACCTTGACTGCCGCCGACCGCACGCGTTGTACTCTTTTGCGAGCGAACTG
CAGCCATCGTTCAGAGTTAGCTGAGTGTTTTGGGCTTCTTCCAATGGTCT
ATGGTGATGGCATGTTCAAGACAACACCATTGACTTTGTTGAATCCGCAG
AGCGAGATGACACCCGAGATTTGATACAAATCCTCCCAAAGTCGACATAA
ATACAGAATAGTACTAGATAGTACAGCACTATTAAATAGTATTACCATTG
TTACAGCAGCAGACTAGTCCATAGTGTATGTACCGAGCATCAGCAGTATA
GTACTCTAGAGTAAAATTCATGGAATCTTGCAGAGTGTACGTTTTCCCCT
TCCGAGGTGATATTTTTTTACCTTGTGACCAAGGACTGAAATTTTACATA
CCATATTCAGCCGGAGTTTGGAGAATGAGCAGGATGACGCGGGGACCGGA
CGGCCGAACGCGTCTCGCGAGACCAAACTCTCAGGCGCGAACGAGGACAG
ACGGGGAAATATTTATTTTCTATGTTCAGCTGACCACGGGCAGGATTAGC
AACCTGACCCACAGTTGATCCATACTCTTCTATTTACTCAGTAATATGTG
ATGGCGATGCATACTCTTTGAGAGATATTCGTATCACAGCAACGGTACTT
GTAGCACTGTCATCATCCCCTCTCAGTTAGACCAATGAGGACCTCCGTAT
AAAATAAACGTGTCCCGGAGAGACCTGAAAAATAAACGAATCCGGCCCTT
GAGCACAAATTTCATGTTTTCTGTGAACCGGAACGCCCCCAAAAACATCC
AACTCTTAGATAAAAAATTCATAGTATATTTACTGCAGCCTTGAACCGCC
ATACTCCATCGGGTCTTTCCCGAGTTTATCGGGTCACGCAATTGCGTACC
GACGGCGTTCACTGCCGAGAGTCCGCCAGCAAAGGGCCAGTAAATCTCAA
GCTAGTTCCAAACGGGTGCTGCCTTGGCAGGTCACCATGGACCAATTAAT
GTGAGCCTCTCTTTCCCACGCCCATTTTTGGTATCAAGTGGGCATGTTGA
AAGTACCTACCTGTACATCAGTGGTGTCGAACATGGCAGTATTATAAATA
GTAATTACTGTACCCTGGAAGCTTTCGACGAAAAGGGCGATATTCGGAGG
ACGTGCCCGCAGAGCTGTACGCGTATTCAACGTAGAAGCGTTAGCTGACT
GGATCATGAAGGAGCAGGGGGCATGCCGCGACTTCAACCGTTCTTATCCG
CGAGGCTTCCTGAGTCTTGCGAGGCGTCAAAAGTTTCGTGGTTGTGAATG
AAGCCTCTGACTGCCCTAGGCCAGATTGACCAATCTTCTGAACGCGATGG
CTCGCACGCGTCGAACCTATGCGGTTCTTGAGGGGTTTCAGCCCGGCGAG
ATGTTTGGAATCATTTGAGCTACGCTGCCAACTGAACAATATAGGGCCAC
AATCTGCGTTGTCGAAGGATGGCGCCGACCGCCCCCACCCCCCCCTCCCT
AAATGTTGGAATCCATTAATAGGTGGAACATTGCTGTACGGTCTCGAGCC
GCCCTCAGATAGGGCCGAAGTCCGCATTTGCGGAGGCTTGACGCTTTAAC
CGCCAGAGAGCGTTATTCCTAGATAACGGGGGGAATGAACTGTACTGCTG
TCAGCCGGTTTGGTCGCACGGATTCCCCGTAGAAACTGTACTGTTCTATG
TATAGAACGCTTTCGTTCGTACGAATCGTGTCCAACCGCCTCATGCGACC
GCCCGGGCTCCCGCTTCTCCTTCGCACCGCCGCCGCCGCCGCCCCCGCGT
GTCCCCACTGACTGACGCCGTTGCAACCTCCTGCAGTCATCGCCAGAGGA
GGAGGAGGAGGAGGAGTCAGCTCGCCCACAGGTGGTTTGCGACAGAGTTT
TTTTTTCATTTTTGGATAATTGGGATCTTGTGTTTTTGCAGTCGGTACTA
CACGCAGAGAAGTTTTCTACAATATGCGGACTCGATTTTCTGGTGCCGAC
CGCCGCCGCGCGGCCAAAACGCAGCTCGAAAGTCGCCCTTAAAAAAAAGA
GAGAGTGGTTGTATGGGGGAAATCCGCTCGTTGGGTAGAAACGTGGTACA
GCAACTTTGAGCTTCTTCAGAAATTGGATGAACTACGTTAGGTCTTACAA
TGGGTCGTATTTCTTAGGTCTACCCTACAACGATCGAGGATGAAGACTGC
TGTACAACTAGGGCCTGAATGAAAACGTCATAGCTTTATCGAACAAATCG
CGAAAGGGATGCTACAAGTATTTGCAGCATATTGTGACTACGTAATACGA
AGTATTTTTCTTCACCCATGATTTTCTTTTTTCTTTTTTCTTTTTTCTTT
TTTTCATCTCACTTATTGATAGTATAGCCGATGAGCCTCAACGTTACCAC
TCTGCCTATACTGTGGACACTATGATAAGGATCTTCCCATCTCTCCCTGG
ACCACGCACGCCTTATGAATTTTCATCTCGATGCAAGTTCAGCACTCTTA
TACAACTCATCAGCCAATGGTTGAATTTTACTTACTATTAATACGGGCTC
ACGCTTTCCGCTATGGACGCCAGAAGAAAAAAAAAATGTTTTTAACAAGA
ATTGAACTCACGGCTTCCGCACTAGCAGGTGTGCAGGTTACCTACTGGTA
GTAGACAACTCGGGCGACGAGGGCCCTGTATTATACTAGTAATATGAATA
TTATATACTAGTACCTAGGCCGGTCGCCCCGGTAGCTCAGAAGTAACCTC
GTGACCTTCTGACACGTTGGGACGTGAGTTCGTATCATGGTAAACGGAAT
TTTTTCTCACGAAAAACGAAAACTTAAAAAATCATGCCCAACAAGCGGAG
AACGATTAAATCGCTAGTACACAAAATTCGACTTCACGGTCGACGAGGGA
AACGAATGGCTGAATCCTTCTCGCGAGAAACGCACAGCAGAACGAAGGAG
GATGACAAATCATGTATGACCCCGGCTGGTACGTCCAACGAACTTGATGT
CCAGAATAAATGGGAAGAAACAAACACACACCTCACACTTTATACAGTAC
CCTATTATAAACTAGATATTGAAGTACAGGACAATGAAAACGAAGTCCCT
ACCAAATCCTCTCTCGAACATTGTCAAGTATCGAACCCCCGTTGAGAGCT
TCAACCTTCACCCTCAGCCCCTGTCGTTTCCCGTTTATCCGAAGGCGGAA
GTAACGGACAAAGTCTTTTTCGACGTGGAGATCAACGGGGAGCCGGCGGG
CAGGGTCATCATGGGGCTTTACGGCGGGATCGTGCCCAAAACGGCGGCGA
ACTTTGTCGCCCTTTGCAAGGGGGATCCGGTGAGCTGATGAGCCGCCGGG
GCTTGTTTTTATCACTTACACCGCCTTTGATTAATAGCCGAAAGGAGTTC
ATTTACTACAAACAAGCTTTGGAATATTTCGTTTGAATTCCGAATGGGCG
TAAACCGAATCAAGAGGTTACGATGTTCCTTCCGGGGGTGGATTAAATAT
ATTCCCCTCCCCCCTGCTTCATTTCCTCACCAGCCACTATTATTAATACT
GTGTGTGACTCCTCTAAGAGCATTATAGCAAGAGCATTATAGCAGGAGCA
GACCCTGCGGAGTTGGAACTATGTGGCCAAAATATTTCCAAAGCTGCGCG
GCTTGCGCCATGTGTGCTACGCATGGTGTGGAGGCGTTTTTTTGGGGGGG
GGGAGACGGGGGGTGCATATTTACCACTCTCGTCGTGTGTAATGCACCTT
CGCGCTAACCGGACCTTTTTCGTAGGAAACCCTGCTTCCGTCCAAAAGTA
CGTTTTCCCTCGGTAGTTTTAAACGACGCTGCTATTATAAAAGCGTGGCG
TCAGCTTTCCATATCCTCAAACGCCTTGGTCGACGACCCGCTCACGCGTT
GCCTCTATCCACTATTGAATTCTCACCCATTCCGTGCCCATCCATGTTTG
CTCTTAGACTGGAGTATAACTAGCCTACGACTTTTAACGCATACATAGTA
TTTCCCACCCCTTTCCGTCTCTTTCGGTTTACAGTTACAGTTACAGTAAC
CGTAACCGTTACATTGTTATAGTAACCGTTACATTGTTATAGTAACCGTT
ACATTGTTATAGTAACCGTTACATTGTTATAGTAACCGTTACATTGTTAT
AGTAACCGTTACATTGTTATAGTAACCGTTACATTGTTATAGTAACCGTT
ACATTGTTATAGTAACCGTTACATTGTTATAGTAACCGTTACATTGTTAC
AGTAACCGTTACATTGTTATAGTAACCGTTACATTGTTATAGTAACCGTT
ACATTGTTATACCGGTAGTAACCGTTACCCTGGTACATTGTTATAGTAAC
CGTTACATTGTTATAGTAACCGTTACATTGTTATAGTAACCGTTACATTG
TTATAGTAACCGTTATATTGTTATAGTAACCGTTACATTGTTATAGTAAC
GGTTACATTGTTACATAGCTCAAGTACTCGAATCCAACGAATGTACTGAA
ATTAGTTACCTCCGGTGGGTTGGAAATGACTACGAAATCCAACCGTTTTC
GACTGATCCCAGTTCATTATTGCTATTATAGCTGTAAACTCAAGCGTACG
TTGTGTGGGAGTTCCCACCATTTCCTGCCGTGCACTGAATGAAGTGATTG
ATGCAGTACATCGCGCTAAAGTACGTGTGATTGATGCAGTACGCGATGAT
GTGCATGCAAAATTTAGCACCGTTTTCGAGAGTCGAGCCATGTTCGCGTC
GAGACAAGGCATCTACCATACATACATACATACATACATACATACATACA
TACATACATACATACAGTCGAGGTCCCGATATAGCGGTGTCCTGAATAGC
GAATGGTCCCACTTTAGCGATGTCAAAATCGCTTGTCACAGCTTCGACCC
GGTATAACGAGGTCGCGTCGCTATTGAGGGATGGTCCTCCAATAACGTGG
TACCTCGCTATTGGGAGTGCCGCTATAACGGGAAAGCCTCGATATATGGG
GACGGACGGTCCTCGGCCCCTTCCACCAGCGGCCGAATGTGGCTTTGTGA
AAACCCTCTGGGTGAAGCTGGGAATGTGGACTAATCACACAGCAGGACAA
CGAGACAACAGATAGCATAGTATAAAGTCCCTTGCGGGCGTGCTGTAAAA
CGAAAACTTAACGTTGTTGCCAATCCTATAATATCATACCGTAACGTTTG
TCATGTACACTACACTACAGCTCATAATGTAGTTAGATATTGTTCGATGA
CACTTACTATCATAGACTATTATGGTTATGTTACTGTACTGTATTGTACT
GTTGTACAGTAATAAATTAAGTATAACAATAGTTATTGGCCAACTTTCCA
TTATCACGTCTACGTCTATAACTTGTAGATTCCCTTCATCGACACCCATC
CGATCCTAACTATGTACTAAAGCGTCTTCTGTTTTTTTTTGCTTGGTGGC
TCTGCACGGCGAATAATATAGTAAATAGTGTGCAGTATAACGGTGGGTTT
GTTCCCGACATAATACTGTTGACGCAATGTTACTACCATCGGGGAACCCG
TTTAAATGCCATGAAGTGGTTTTGTGTTTCCAGCCTATGATCCCACCTAT
GAATCGTTTTGACATTTATTTTTCCTCCTGACTGGGGGTTGCTCAGAAGG
TATAGGCGCGTTCGTATTTTTCTTTGAACAGAACAGAACAGCTAGCAGAC
CTCACGGCGCCGCTGCGGCACCGCAACCCAGGACCATACACCATGCCATG
TGTTACAAGGGAACAGTGCCTGGTTCAAGATCGCACGCCGCAGGCTTCCG
ATGGCCATTCGTGCCGCGATGTGTGTGGTGTGGGCGGCAGGCAGACATGA
GGGAATTTGCGCAAGCCTAGTGCGTGTACATGACAGCAGTTTTGGTACTG
GTGGATTTGCCGTGTTGTAGGCACTGCAGATTCTCCATGCGTGGTGTGAA
AACATATAAGGCACAACAATATAAATCAGTCATTATATTACAATGTCATT
ACTATTGTGGTCCCTGATGTTCTGAGTCGCTTATCGCGTGCTGCATAGAC
AACAGATGCATTCCCCGTACTGAGAACTACTGAATCTGTTCGATGCACAT
ACATACATATATACATACAATAAGTTTTATTGATCCCCTCTTGGGAGGAT
CAATACGAGTGGCATAGAATGACTAGGATGACAGGGCCGGATTGCGCGGT
TATGTGCAATTTAATATACATACATACATACATACATACGTAATAAGTTT
CATTGATTCCCCCTTGGGAGGATCAATACGAGTGGCATAAAATGACTAGG
ATGACAGGGCCGGATTGCGCGGTTATGTGCAATTTAATAAATATACATAC
ATACATACATACATACATACATACATACATACATACATACATAAATCTCT
AGTCTAGGTGATAGGACTATTAATCATGTATAATTGTCAGCCCTCGCGTT
TTCCATCCGCTGATCGATCAACCTCCGCGCTTGTGCTGATTTGATTACTT
CCTCTCGCTAGTAGGCTAAGAGGCAGCCTTTCGGGTACAAGGGGTCGCGG
TTTCATCGCGTCATACCGGGATTTATGGTACAGGTACGGGAAACATATTA
TTCCTAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig694:257035..267141-

>mRNA_F-serratus_M_contig694.18048.1 ID=mRNA_F-serratus_M_contig694.18048.1|Name=mRNA_F-serratus_M_contig694.18048.1|organism=Fucus serratus male|type=CDS|length=1566bp|location=Sequence derived from alignment at F-serratus_M_contig694:257035..267141- (Fucus serratus male)
AAATTGTCTCCTAGCTCACTTTCCATTTGGTTGTCTCACGCAGATCACAC
CACAAACCACCTGTGTGTTCCATTCTGTCTCATCTCCTCCGTAGAAATGT
ATATGTCTTCATCCCGACGTGGCTGTGCAAGGATTGTTCGAGCAGCAAAT
AGAACCGCCAGCGTCAACGCAGTCTGCTGTACCCACGCCCTGCCCATGCC
CAGGCCACAGGGTTCGCTATGGATTGCTTCGTCGCCAATGCCTGGGCGTT
GGGCAACAACTTCCGTGGCCCGTGCTTGGTTTGGGAGCGCTTCGGGTGGT
GGCTTCGACGCTGCTAACAGGGCCCGGGGTGGTGTAGCAAGTGGGCCGGG
CGGCGGGGCACCACAGCCGCCCCCTCCACCTCGACCTGGGCGAAGCAGCC
CGGCGCTGGCCTTGGTGGGGGGAATCCTGCTGTTTGGTGGAGGATACATT
GGAGCGCAGCTGCTGAAAGGGGAAGGGTCCTCGAAGCAGCAGAAAAGTGC
TGCGCGCGATAAATTGTCTCCTAGCTCACTTTCCATTTGGTTGTCTCACG
CAGATCACACCACAAACCACCTGTGTGTTCCATTCTGTCTCATCTCCTCC
GTAGAAATGTATATGTCTTCATCCCGACGTGGCTGTGCAAGGATTGTTCG
AGCAGCAAATAGAACCGCCAGCGTCAACGCAGTCTGCTGTACCCACGCCC
TGCCCATGCCCAGGCCACAGGGTTCGCTATGGATTGCTTCGTCGCCAATG
CCTGGGCGTTGGGCAACAACTTCCGTGGCCCGTGCTTGGTTTGGGAGCGC
TTCGGGTGGTGGCTTCGACGCTGCTAACAGGGCCCGGGGTGGTGTAGCAA
GTGGGCCGGGCGGCGGGGCACCACAGCCGCCCCCTCCACCTCGACCTGGG
CGAAGCAGCCCGGCGCTGGCCTTGGTGGGGGGAATCCTGCTGTTTGGTGG
AGGATACATTGGAGCGCAGCTGCTGAAAGGGGAAGGGTCCTCGAAGCAGC
AGAAAAGTGCTGCGCGCGATTCATCGCCAGAGGAGGAGGAGGAGGAGGAG
TCAGCTCGCCCACAGTCATCGCCAGAGGAGGAGGAGGAGGAGGAGTCAGC
TCGCCCACAGGCGGAAGTAACGGACAAAGTCTTTTTCGACGTGGAGATCA
ACGGGGAGCCGGCGGGCAGGGTCATCATGGGGCTTTACGGCGGGATCGTG
CCCAAAACGGCGGCGAACTTTGTCGCCCTTTGCAAGGGGGATCCGGCGGA
AGTAACGGACAAAGTCTTTTTCGACGTGGAGATCAACGGGGAGCCGGCGG
GCAGGGTCATCATGGGGCTTTACGGCGGGATCGTGCCCAAAACGGCGGCG
AACTTTGTCGCCCTTTGCAAGGGGGATCCGGCTAAGAGGCAGCCTTTCGG
GTACAAGGGGTCGCGGTTTCATCGCGTCATACCGGGATTTATGGTACAGG
TACGGGAAACATATTATTCCTAAGCTAAGAGGCAGCCTTTCGGGTACAAG
GGGTCGCGGTTTCATCGCGTCATACCGGGATTTATGGTACAGGTACGGGA
AACATATTATTCCTAA
back to top