mRNA_F-serratus_M_contig694.18043.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig694.18043.1
Unique NamemRNA_F-serratus_M_contig694.18043.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig694.18043.1 vs. uniprot
Match: A0A6H5KSZ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSZ7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 4.670e-20
Identity = 53/70 (75.71%), Postives = 57/70 (81.43%), Query Frame = 3 
Query:  234 AKGEGGEEEQGPMDLNLEQMFEVFEAADKEVSDEAVGKKSDSTKTPGA-GKDPAEAMGDMLSNFFGGGKK 440
            A+ E G EEQ PMDL+LEQMFEVFEAADKEVSDE VGKK    K P A  KDPAEAMGDMLS+FFGGG+K
Sbjct:   59 AEKEDGAEEQEPMDLDLEQMFEVFEAADKEVSDEEVGKKGG--KKPAARAKDPAEAMGDMLSSFFGGGEK 126
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BLAST of mRNA_F-serratus_M_contig694.18043.1 vs. uniprot
Match: A0A835YKL6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKL6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 6.620e-6
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 3 
Query:  273 DLNLEQMFEVFEAADKEVSDEAVGKKSDSTKTPGAGKDPAEAMGDMLSNFFGGGKK 440
            DLNLE MFEVF+ ADK +SD+ VGK          GKD  + + DML + FGG K+
Sbjct:    9 DLNLEDMFEVFDKADKSISDKEVGK--------AGGKDAGKDIADMLGSLFGGKKE 56
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig694.18043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSZ7_9PHAE4.670e-2075.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YKL6_9STRA6.620e-650.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig694contigF-serratus_M_contig694:178846..182320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_003860.1
Exons2
Model size724
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig694.18043.1prot_F-serratus_M_contig694.18043.1Fucus serratus malepolypeptideF-serratus_M_contig694 179127..182279 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932121.0276845-UTR-F-serratus_M_contig694:178845..1791261622932121.0276845-UTR-F-serratus_M_contig694:178845..179126Fucus serratus maleUTRF-serratus_M_contig694 178846..179126 -
1690964157.803843-UTR-F-serratus_M_contig694:178845..1791261690964157.803843-UTR-F-serratus_M_contig694:178845..179126Fucus serratus maleUTRF-serratus_M_contig694 178846..179126 -
1622932121.0890312-UTR-F-serratus_M_contig694:182279..1823201622932121.0890312-UTR-F-serratus_M_contig694:182279..182320Fucus serratus maleUTRF-serratus_M_contig694 182280..182320 -
1690964157.8367562-UTR-F-serratus_M_contig694:182279..1823201690964157.8367562-UTR-F-serratus_M_contig694:182279..182320Fucus serratus maleUTRF-serratus_M_contig694 182280..182320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932121.0475948-CDS-F-serratus_M_contig694:179126..1792701622932121.0475948-CDS-F-serratus_M_contig694:179126..179270Fucus serratus maleCDSF-serratus_M_contig694 179127..179270 -
1690964157.8147953-CDS-F-serratus_M_contig694:179126..1792701690964157.8147953-CDS-F-serratus_M_contig694:179126..179270Fucus serratus maleCDSF-serratus_M_contig694 179127..179270 -
1622932121.0705745-CDS-F-serratus_M_contig694:182021..1822791622932121.0705745-CDS-F-serratus_M_contig694:182021..182279Fucus serratus maleCDSF-serratus_M_contig694 182022..182279 -
1690964157.8262415-CDS-F-serratus_M_contig694:182021..1822791690964157.8262415-CDS-F-serratus_M_contig694:182021..182279Fucus serratus maleCDSF-serratus_M_contig694 182022..182279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig694.18043.1

>prot_F-serratus_M_contig694.18043.1 ID=prot_F-serratus_M_contig694.18043.1|Name=mRNA_F-serratus_M_contig694.18043.1|organism=Fucus serratus male|type=polypeptide|length=134bp
MRTSTLLGMVGMTLSCCTPCAIGFVVPSGRLPPGTSSGTASERHMLNQHP
RRGSLRALAAEGKPAKGEGGEEEQGPMDLNLEQMFEVFEAADKEVSDEAV
GKKSDSTKTPGAGKDPAEAMGDMLSNFFGGGKK*
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mRNA from alignment at F-serratus_M_contig694:178846..182320-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig694.18043.1 ID=mRNA_F-serratus_M_contig694.18043.1|Name=mRNA_F-serratus_M_contig694.18043.1|organism=Fucus serratus male|type=mRNA|length=3475bp|location=Sequence derived from alignment at F-serratus_M_contig694:178846..182320- (Fucus serratus male)
ATACTTTACTCTCGTGGATATATCACTTCTCTGTGACTAACATGAGGACT
TCTACGCTATTGGGCATGGTCGGGATGACTCTTTCCTGTTGTACGCCCTG
CGCGATCGGCTTCGTGGTGCCTTCAGGCCGTTTACCACCAGGAACATCAA
GCGGCACTGCTTCCGAGCGTCATATGCTGAACCAACATCCTCGGAGAGGT
TCTCTCCGGGCGCTCGCAGCCGAGGGAAAACCTGCAAAGGGAGAAGGAGG
CGAGGAGGAGCAGGGGCCCATGGATCTCAACTTGGAGCAGATGTTTGAGG
TGCGGTGAGGTTCAATGAACAATCAGTTTCTGCTTTTATTTCGGTCTTCG
CACGGTACGCTGCTGCCGGCAACGTAAGAAACCCTGAAACATGAACACCT
GGCAGACATTCTCTGAGCAAAGACGACGAAGTCGGATCGAGAAGGACCTG
GGGTCTTGTACTTTAAGAGAGCTCAAAAGGTGTGCGACTGAGGGGCGGAT
CCACGCCAGCTACATCGACCGTCGAATGCATGTATAGCTTTATCGTGAGA
ATAGGGCAGGGTCTTCGCGAAGTGATCGATGCAACGAGCCCGAGAGAGGA
CGCGTGGCTGCAGAACGACTACTGGTATAATACCGTACATACATATGTAT
GTACACATGCAGCACCAAGCAGGAACCCCCGAAATCTTTCGGTGTTTGAC
CTTTGTTCTCACTGTACGTACCTAATGTATGCCGCTATTCTCAACCCAAC
CATATTGAGTAAGCGATCTGCCCAATCGACGTACGAGCACATCAAGCAAA
AAGCACGATAAAATCTCACAAGGTACTGTATTACCGGTACGTAGAGCACA
ATCTGTGTTGGAAAAAAAACTCCGCACTCCCCTTATCTTCGACACAATCA
ACACTCTAGTCCGTGGAGGACCTCTACTTAGCTCAGCCTCCAGCGGGCCT
CATTATTGACGCCGCTCCTTCTCCATGGGAAAAGCCTTCCAGTATATAGT
CCACCTTCTGCATGCTCTATTGGTTGAACTTTTAACTTTTGCGGTATCAT
AAGCCCCCCGAGATACTAATTAATGTGCAGAGTAAATGTTAAGCAAAAGT
GGGAAGGCTGTATCATGTACGAGTGAGTGTTGATCAACGAAACTGACGGG
TGTACTCTTTACTCTATGCTATTGTGGCGTCCACGGTAGGACATTTATCT
CGTCGACCGTGAAGTCGAGTTTTAGTGTATGTTCGCGTGTGTGTTGACTT
TTCTGGTCCTTTTATTTCTCTTTTATTTCTCATAATATGTACCCGTTTTG
GGTAGTTAGCCTGTAACCACGGAAGGCGTTCGCGTCAGTTGGACCAGTAC
GGATGTTGGTAGGTGCTGGGCAGAGATCGGAACGGTTTTTAATGTGAAGA
CAACAACACAACATGTATGGTCACACATATAGCTAGAGTATGGATCCACC
GGGTAAGGTTGGCAGTCCTGCACGTGGTCAGCTGAACAGGGAAAATGATA
ATTCCCTGTCCGCGTTCGTGCCTGAGAATTTGGTCTCGCGAGACGGGTTC
GGCAGCCCCGTCCCGCGTCAGCCTGCTCATCTCCATATTCAGGCTGAATC
TGGTGCTTGCTTACGGGATTCCTCCCGAGTTCAGCGGTGGCGTCCATCTA
TTCATTGTAACCACCTTACGCCATCGGGTCAGTCCCGAGTTTATCGGGTC
ACGCAATTGCGTACCGTTGGCGTTCACTGCCGAGAGTCCGCCGGCACGGG
GCCAGTAAACCTCAAGGTAGTTCCGAACGAGTGCTGCCTTGGCAGGTCAC
CATGGACCAATTGATATTCGCCTCTCTTTCCCGCCCTCACTAATGGTATG
AAGTGGGCATGTTGAGAGTACCGGCGTGTACGAACGATTTAATCGTTCTC
CACTTGTAGGGCATTTTCATGTATGTATGATTTTATTTTTGTGAGGAAGA
ATCCCACTTCGTGTGACTGCACCGAGATTCGAACTCACTTACCAACGTGT
AAAGGTTTCGAGGTTACCATCTGAACCACCGGGGCGACCAGGGGCCATAG
AGTTGTAAAAGGGGGAAGATACGGCAGCAGAGGTTACGTTGGAAATTTAG
AAAAATACTTTATTACAGTTGGCCGATTTTCCCCCGATTTTTTCACTGAA
AACGACCCGTCCACGGAACTGGGACTTCCGTGGGGATTATAGGAAGTTTC
GGAGAACATGTACCTCATGCACCTCAACGAGGGCTATCGCCATGGAGATG
GTTCCTCAATAAGAGATTCGCTACCTTGGTCGGCACCAGCGCGCCAACGG
TCGCTGTGCTTGGGAGCGCTTTCGTATCCGTCGCTTGCTACTCTTGCTGT
TTTTTTTTTATCTGAAAAATGGTTCAAAGATGCAAAAAACACAACACCAA
AGTACAACCGCCCCCCCCCCCCCGCGCGCAACCCATGGAGTTGTACTTCC
ATGTTGGCGTTCCATGGAGGGTTTCAGGGGTGGGGCGGCGAGTTCCTCCA
CAATTTCAGTAAACACAAAATGGGGACGAATTTTGTGAACTTTACCGTGG
AAATGTTACGACGGAAATTGGCCACGAAATCCCGTTTATATTTAGCGAAC
ACCCAAATATACCGCGAAATTTACAGCAAGGCTAGTCATGCGCTGTAAGT
TTAACTTATAGAGAGGGCGAGGTGATCTTTGCGAGACGCAGACAGCAGCA
CGGCGTTTGTTTTTTTGGAGAGTGTACGGTGTCACGCGGCAAGATTGAAT
ATATATATATATATATATATATGGCGTGGTTGGACGCGCCTGTGAGAGCA
AGACCGCGAAAGGGGAACGAAAAAAAATCAAATATCCACTGTTTTTGTCC
GTATTCCTTTGCAACTTTACTTTTCGAAACCAGTTATTTTGGGTGTCGAC
CCGATGGCATGAGCAGTCTGAAAGTGAGTAAACTTCTGAATATACTCAAT
TGATTTCCTATTTGCACGTGTACTTGTTTTTGTTTTTCCTTCTTTTCTCG
CGCGCTATCGTTACTAATATGGTACCTGGTACATAATACGAGCTCTATAG
GTGTTCGAGGCTGCGGACAAGGAGGTCTCCGACGAGGCAGTGGGCAAAAA
GTCGGACTCAACGAAGACGCCCGGCGCGGGGAAAGACCCCGCCGAAGCTA
TGGGGGACATGCTGAGCAATTTCTTCGGGGGTGGCAAAAAGTAGCGCAGA
ATGTTTACGCACGCACGTCCTCTAAGAGATAAGTTTTCAATGTTTAGATG
GAGGTGTGTTGTGACAACTCCTCCGGGGATGGGTGTATAGGGTGTACGTA
TCCCCGCTTTGTTTTTTCCGCAAGTTGATTGGTCAGCGAGAGCATGCATT
GCAGGAGATTTTGGGAAAAGGCTGACCGAAGATTTGTTTTTCTCTCGTGA
GCATGGTGCGTTCTCAGTACCACGGTCGTGCTGTCGAGATTTTGCCAATA
AAAAAAGGTCGGAGTTCTATGTCGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig694:178846..182320-

>mRNA_F-serratus_M_contig694.18043.1 ID=mRNA_F-serratus_M_contig694.18043.1|Name=mRNA_F-serratus_M_contig694.18043.1|organism=Fucus serratus male|type=CDS|length=804bp|location=Sequence derived from alignment at F-serratus_M_contig694:178846..182320- (Fucus serratus male)
ATGAGGACTTCTACGCTATTGGGCATGGTCGGGATGACTCTTTCCTGTTG
TACGCCCTGCGCGATCGGCTTCGTGGTGCCTTCAGGCCGTTTACCACCAG
GAACATCAAGCGGCACTGCTTCCGAGCGTCATATGCTGAACCAACATCCT
CGGAGAGGTTCTCTCCGGGCGCTCGCAGCCGAGGGAAAACCTGCAAAGGG
AGAAGGAGGCGAGGAGGAGCAGGGGCCCATGGATCTCAACTTGGAGCAGA
TGTTTGAGATGAGGACTTCTACGCTATTGGGCATGGTCGGGATGACTCTT
TCCTGTTGTACGCCCTGCGCGATCGGCTTCGTGGTGCCTTCAGGCCGTTT
ACCACCAGGAACATCAAGCGGCACTGCTTCCGAGCGTCATATGCTGAACC
AACATCCTCGGAGAGGTTCTCTCCGGGCGCTCGCAGCCGAGGGAAAACCT
GCAAAGGGAGAAGGAGGCGAGGAGGAGCAGGGGCCCATGGATCTCAACTT
GGAGCAGATGTTTGAGGTGTTCGAGGCTGCGGACAAGGAGGTCTCCGACG
AGGCAGTGGGCAAAAAGTCGGACTCAACGAAGACGCCCGGCGCGGGGAAA
GACCCCGCCGAAGCTATGGGGGACATGCTGAGCAATTTCTTCGGGGGTGG
CAAAAAGTAGGTGTTCGAGGCTGCGGACAAGGAGGTCTCCGACGAGGCAG
TGGGCAAAAAGTCGGACTCAACGAAGACGCCCGGCGCGGGGAAAGACCCC
GCCGAAGCTATGGGGGACATGCTGAGCAATTTCTTCGGGGGTGGCAAAAA
GTAG
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