mRNA_F-serratus_M_contig692.18012.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig692.18012.1
Unique NamemRNA_F-serratus_M_contig692.18012.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig692.18012.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.950e-41
Identity = 84/118 (71.19%), Postives = 95/118 (80.51%), Query Frame = 1
Query:    1 MVALNHR-GSNEDQVRAPTEARGGTWQAIPENLTIESRLQEVKQKGPSHQDRRVLYVEMLKMVTSAVSAGVQTVPPETLRAMVETFERSVNAAGMISSGQGAVLGNPLAVRQPAARSE 351
            MVAL H   S +DQVR PT   G TWQAIPE+ TIE+RLQ V Q G S QDRR+LYVEMLK  T+AVS+GVQ VPP+T+RA+V+TFE S+NAA MISSGQGAVLGNP AVRQPA RSE
Sbjct:  439 MVALVHSDASKDDQVRPPTVVVGDTWQAIPEDATIETRLQRVAQTGQSCQDRRLLYVEMLKKATAAVSSGVQLVPPDTMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAVRSE 556          
BLAST of mRNA_F-serratus_M_contig692.18012.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 9.310e-28
Identity = 61/89 (68.54%), Postives = 76/89 (85.39%), Query Frame = 1
Query:  145 QDRRVLYVEMLKMVTSAVSAGVQTVPPETLRAMVETFERSVNAAGMISSGQGAVLGNPLAVRQPAARSEGSRARSAVEFSGAASRRSAQ 411
            QDRR+LYV+M+K   +AVSAGV+ VPP+TLRA+VETFE S+NAA  ISSGQG VLGNP AVRQPA RS+G+RA+S++E+ GA +RR AQ
Sbjct:  334 QDRRLLYVDMVKRTNAAVSAGVELVPPDTLRAIVETFESSLNAAARISSGQGVVLGNPQAVRQPAKRSQGARAKSSLEYGGARARRRAQ 422          
BLAST of mRNA_F-serratus_M_contig692.18012.1 vs. uniprot
Match: A0A6H5JCK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.700e-22
Identity = 59/122 (48.36%), Postives = 76/122 (62.30%), Query Frame = 1
Query:   64 GGTWQAIPENLTIESRLQEVKQKGPSHQDRRVLYVEMLKMVTSAVSAGVQTVPPETLRAMVETFERSVNAAGMISSGQGAVLGNPLAVRQPAARSEGSRARSAVEFS---GAASRRSAQSYN 420
            G  W A   N+TIES L ++K+ GP+ QDRR LYV+ LK  T+AVS GV+TVPPE LRA+V  F++ V+ A  I S  G  + NP  VR P +R  G R R++ E     GAA R   QSY+
Sbjct:   10 GVQWDAG--NVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 129          
BLAST of mRNA_F-serratus_M_contig692.18012.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.740e-22
Identity = 69/160 (43.12%), Postives = 90/160 (56.25%), Query Frame = 1
Query:    4 VALNHRGSNEDQVRAPT-------------EARGGT-----WQAIPENLTIESRLQEVKQKGPSHQDRRVLYVEMLKMVTSAVSAGVQTVPPETLRAMVETFERSVNAAGMISSGQGAVLGNPLAVRQPAARSEGSRARSAVEFS---GAASRRSAQSYN 420
            VALNH+  +E + +AP              E  GG      W A   N+TIES L ++K+ GP+ QDRR LYV+ LK  T+AVS GV+TVPPE LRA+V  F++ V+ A  I S  G  + NP  VR P +R  G R R++ E     GAA R   QSY+
Sbjct:  717 VALNHKALSEGEKQAPLVATGRLQCATEGDEGGGGAGAGVQWDAG--NVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 874          
BLAST of mRNA_F-serratus_M_contig692.18012.1 vs. uniprot
Match: D7FLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA8_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.620e-20
Identity = 58/137 (42.34%), Postives = 76/137 (55.47%), Query Frame = 1
Query:    4 VALNHRGSNEDQVRAPTEARG----------------GTWQAIPENLTIESRLQEVKQKGPSHQDRRVLYVEMLKMVTSAVSAGVQTVPPETLRAMVETFERSVNAAGMISSGQGAVLGNPLAVRQPAARSEGSRAR 366
            V  NH   +E + +AP  A G                G  Q    N+TIES L ++K+ GP+ QDRR LYV+ LK  T+AVS GV+TVPPE LRA+V+ F++ V+ A  I S  G  + NP  VR P +R  G R R
Sbjct:  272 VTKNHEALSEGEQQAPLVATGRLQCATDGDKGGGGAGGGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVQQFKQGVHQASRIGSSAGLAVANPAVVRPPTSRDTGKRKR 408          
BLAST of mRNA_F-serratus_M_contig692.18012.1 vs. uniprot
Match: A0A6H5JMX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX3_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.820e-19
Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   64 GGTWQAIPENLTIESRLQEVKQKGPSHQDRRVLYVEMLKMVTSAVSAGVQTVPPETLRAMVETFER-SVNAAGMISSGQGAVLGNPLAVRQPAARSEGSRARSAVEFS---GAASRRSAQSYN 420
            G  W A   N+TIES L ++K+ GP+ QDRR LYV+ LK  T+AVS GV+TVPPE LRA+V  F++  V+ A  I S  G  + NP  VR P +R  G R R++ E     GAA R   QSY+
Sbjct:  109 GVQWDAG--NVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQXGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 229          
BLAST of mRNA_F-serratus_M_contig692.18012.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.960e-14
Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 MVAL-NHRGSNEDQVRAPTEARGGTWQAIPENLTIESRLQEVKQKGPSHQDRRVLYVEMLKMVT 189
            MVAL N   S +DQVR PT   G TWQAIPEN TIE+RLQ V Q G S QDRR+L+VEMLK  T
Sbjct:  431 MVALVNSDASKDDQVRPPTAMVGDTWQAIPENATIETRLQRVAQTGQSSQDRRLLFVEMLKKTT 494          
BLAST of mRNA_F-serratus_M_contig692.18012.1 vs. uniprot
Match: A0A6H5JUZ2_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ2_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.310e-5
Identity = 41/125 (32.80%), Postives = 68/125 (54.40%), Query Frame = 1
Query:   64 GGTWQA-IPENLTIESRLQEVKQKGPSHQDRRVLYVEMLKMVTSAVSAGVQTVPPETLRAMVETFERSVN--AAGM---ISSGQGAVL--GNPLAVRQPAARSEGSRARSAVEFSGAASRRSAQS 414
            GG W++ +  + T+++ L ++K+KGP++QDR+VLY ++ K +  A S       P    A+V+ F   VN  A G+    + G+GA L   NP  +R PA  S   R  +   ++   S+R+A S
Sbjct:  697 GGRWKSFVGSSQTVQTVLLDLKEKGPTYQDRKVLYADVTKKLGQAASILSDRFSPTVAVALVDQFLTMVNMQAGGVGTTTTGGRGAALFMANPGTLRLPARTSNKRRPGAVERYTRGGSKRAATS 821          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig692.18012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JWW3_9PHAE2.950e-4171.19MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JU34_9PHAE9.310e-2868.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK5_9PHAE2.700e-2248.36Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJG6_9PHAE3.740e-2243.13SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
D7FLA8_ECTSI1.620e-2042.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMX3_9PHAE1.820e-1947.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBU5_9PHAE2.960e-1465.63SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JUZ2_9PHAE2.310e-532.80SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig692contigF-serratus_M_contig692:19457..19882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size426
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932113.1860847-CDS-F-serratus_M_contig692:19456..198821622932113.1860847-CDS-F-serratus_M_contig692:19456..19882Fucus serratus maleCDSF-serratus_M_contig692 19457..19882 +
1690964153.4597495-CDS-F-serratus_M_contig692:19456..198821690964153.4597495-CDS-F-serratus_M_contig692:19456..19882Fucus serratus maleCDSF-serratus_M_contig692 19457..19882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig692.18012.1prot_F-serratus_M_contig692.18012.1Fucus serratus malepolypeptideF-serratus_M_contig692 19457..19882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig692.18012.1

>prot_F-serratus_M_contig692.18012.1 ID=prot_F-serratus_M_contig692.18012.1|Name=mRNA_F-serratus_M_contig692.18012.1|organism=Fucus serratus male|type=polypeptide|length=142bp
MVALNHRGSNEDQVRAPTEARGGTWQAIPENLTIESRLQEVKQKGPSHQD
RRVLYVEMLKMVTSAVSAGVQTVPPETLRAMVETFERSVNAAGMISSGQG
AVLGNPLAVRQPAARSEGSRARSAVEFSGAASRRSAQSYNS*
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mRNA from alignment at F-serratus_M_contig692:19457..19882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig692.18012.1 ID=mRNA_F-serratus_M_contig692.18012.1|Name=mRNA_F-serratus_M_contig692.18012.1|organism=Fucus serratus male|type=mRNA|length=426bp|location=Sequence derived from alignment at F-serratus_M_contig692:19457..19882+ (Fucus serratus male)
ATGGTGGCGCTGAACCACCGTGGCTCCAACGAAGACCAGGTCCGCGCACC GACGGAGGCGCGTGGTGGCACTTGGCAAGCAATCCCAGAGAACCTCACAA TCGAGTCTAGGTTGCAGGAAGTCAAGCAGAAGGGACCAAGTCACCAGGAC CGCCGGGTCTTGTACGTCGAAATGTTGAAGATGGTCACTTCGGCCGTCAG TGCAGGGGTGCAGACCGTACCGCCTGAGACACTGCGTGCTATGGTGGAGA CTTTCGAGCGAAGCGTTAACGCTGCGGGGATGATCTCTTCCGGGCAGGGG GCAGTTCTTGGAAACCCACTAGCGGTACGGCAACCAGCTGCTCGCAGTGA GGGTTCCAGGGCGAGATCGGCCGTGGAGTTCAGCGGGGCTGCATCCAGAA GGAGTGCGCAGAGCTACAACTCTTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig692:19457..19882+

>mRNA_F-serratus_M_contig692.18012.1 ID=mRNA_F-serratus_M_contig692.18012.1|Name=mRNA_F-serratus_M_contig692.18012.1|organism=Fucus serratus male|type=CDS|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig692:19457..19882+ (Fucus serratus male)
ATGGTGGCGCTGAACCACCGTGGCTCCAACGAAGACCAGGTCCGCGCACC
GACGGAGGCGCGTGGTGGCACTTGGCAAGCAATCCCAGAGAACCTCACAA
TCGAGTCTAGGTTGCAGGAAGTCAAGCAGAAGGGACCAAGTCACCAGGAC
CGCCGGGTCTTGTACGTCGAAATGTTGAAGATGGTCACTTCGGCCGTCAG
TGCAGGGGTGCAGACCGTACCGCCTGAGACACTGCGTGCTATGGTGGAGA
CTTTCGAGCGAAGCGTTAACGCTGCGGGGATGATCTCTTCCGGGCAGGGG
GCAGTTCTTGGAAACCCACTAGCGGTACGGCAACCAGCTGCTCGCAGTGA
GGGTTCCAGGGCGAGATCGGCCGTGGAGTTCAGCGGGGCTGCATCCAGAA
GGAGTGCGCAGAGCTACAACTCTTAGATGGTGGCGCTGAACCACCGTGGC
TCCAACGAAGACCAGGTCCGCGCACCGACGGAGGCGCGTGGTGGCACTTG
GCAAGCAATCCCAGAGAACCTCACAATCGAGTCTAGGTTGCAGGAAGTCA
AGCAGAAGGGACCAAGTCACCAGGACCGCCGGGTCTTGTACGTCGAAATG
TTGAAGATGGTCACTTCGGCCGTCAGTGCAGGGGTGCAGACCGTACCGCC
TGAGACACTGCGTGCTATGGTGGAGACTTTCGAGCGAAGCGTTAACGCTG
CGGGGATGATCTCTTCCGGGCAGGGGGCAGTTCTTGGAAACCCACTAGCG
GTACGGCAACCAGCTGCTCGCAGTGAGGGTTCCAGGGCGAGATCGGCCGT
GGAGTTCAGCGGGGCTGCATCCAGAAGGAGTGCGCAGAGCTACAACTCTT
AG
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