mRNA_F-serratus_M_contig691.18008.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig691.18008.1
Unique NamemRNA_F-serratus_M_contig691.18008.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig691.18008.1 vs. uniprot
Match: D7FL96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL96_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 8.340e-5
Identity = 22/36 (61.11%), Postives = 25/36 (69.44%), Query Frame = 1 
Query:  199 CHDPACNKNPYFGWHGQK-ALYCVTHKEPEMVDVKN 303
            C DP C + P FG  G K A+YCV HKEP+MVDV N
Sbjct:    9 CADPDCKRQPSFGKAGGKTAVYCVVHKEPDMVDVVN 44
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig691.18008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL96_ECTSI8.340e-561.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig691contigF-serratus_M_contig691:186753..193329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-24_000490.1
Exons4
Model size695
Cds size693
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig691.18008.1prot_F-serratus_M_contig691.18008.1Fucus serratus malepolypeptideF-serratus_M_contig691 186755..193329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932112.210421-CDS-F-serratus_M_contig691:186754..1870001622932112.210421-CDS-F-serratus_M_contig691:186754..187000Fucus serratus maleCDSF-serratus_M_contig691 186755..187000 -
1690964153.0161102-CDS-F-serratus_M_contig691:186754..1870001690964153.0161102-CDS-F-serratus_M_contig691:186754..187000Fucus serratus maleCDSF-serratus_M_contig691 186755..187000 -
1622932112.2396874-CDS-F-serratus_M_contig691:187228..1872811622932112.2396874-CDS-F-serratus_M_contig691:187228..187281Fucus serratus maleCDSF-serratus_M_contig691 187229..187281 -
1690964153.0278065-CDS-F-serratus_M_contig691:187228..1872811690964153.0278065-CDS-F-serratus_M_contig691:187228..187281Fucus serratus maleCDSF-serratus_M_contig691 187229..187281 -
1622932112.25679-CDS-F-serratus_M_contig691:188507..1886181622932112.25679-CDS-F-serratus_M_contig691:188507..188618Fucus serratus maleCDSF-serratus_M_contig691 188508..188618 -
1690964153.0384157-CDS-F-serratus_M_contig691:188507..1886181690964153.0384157-CDS-F-serratus_M_contig691:188507..188618Fucus serratus maleCDSF-serratus_M_contig691 188508..188618 -
1622932112.2724826-CDS-F-serratus_M_contig691:193046..1933291622932112.2724826-CDS-F-serratus_M_contig691:193046..193329Fucus serratus maleCDSF-serratus_M_contig691 193047..193329 -
1690964153.0489676-CDS-F-serratus_M_contig691:193046..1933291690964153.0489676-CDS-F-serratus_M_contig691:193046..193329Fucus serratus maleCDSF-serratus_M_contig691 193047..193329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig691.18008.1

>prot_F-serratus_M_contig691.18008.1 ID=prot_F-serratus_M_contig691.18008.1|Name=mRNA_F-serratus_M_contig691.18008.1|organism=Fucus serratus male|type=polypeptide|length=231bp
AWPSTLWAHKKSASIQLGVPNLRLVRHPCHERTMIATTNDSFTGDKIPAK
RTKTVLKAPSRRVARTCHDPACNKNPYFGWHGQKALYCVTHKEPEMVDVK
NKRCEADGCMKRGLFGYDGERARFCGGHRLEGMVDLKNKRCKWVGCAKQA
NFAAEGKSTACFCGEHKSPGMVDVKGRRCEVTHCTKVAGFGLLDHQPTAC
AMHRGPGMVDMKQRVRLGGGKAGGINVKIGG
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mRNA from alignment at F-serratus_M_contig691:186753..193329-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig691.18008.1 ID=mRNA_F-serratus_M_contig691.18008.1|Name=mRNA_F-serratus_M_contig691.18008.1|organism=Fucus serratus male|type=mRNA|length=6577bp|location=Sequence derived from alignment at F-serratus_M_contig691:186753..193329- (Fucus serratus male)
GCCTGGCCTTCTACACTCTGGGCCCACAAGAAGTCAGCAAGTATCCAGCT
GGGAGTGCCCAATTTAAGGCTTGTGCGACATCCTTGCCACGAGAGGACAA
TGATCGCGACGACTAATGATTCGTTCACAGGTGACAAGATTCCAGCCAAG
CGCACGAAAACTGTACTGAAAGCCCCGAGCAGGCGGGTTGCTCGCACTTG
CCACGACCCAGCCTGCAACAAGAATCCCTACTTCGGCTGGCACGGACAAA
AGGCCCTCTACTGCGTCACGCATAAAGAGCCAGGTGCGTGTCATATCTAT
GATGTCGTTTTGAGGCAGTTGCGTCTCAAACCCGTTCTCTACAATTGACC
CACCGTGGCGATACTTGTAGACATACTTGCGTCTCAACTTCCTTTCCTTT
GTACAACAGTGTTATAAATCATGACTATGCAGCTTAGTACTATTATACAG
CTTATAGTATGGTACTGCTGTGAGCATCTTGTTTCCCAACGGGCTCTTTT
TTTTTTTTTTTTTACGTGACCGACAAGATTATGTCTGGTGTGCCCTTTCG
CTCCTCCTTGATGATACGTGAACGACCCGCTCGTTGATGTATCTACATAC
ACGACCGCACGCGATGTGGGCCGATCGAGGTCAGATGTCATTTCTTTTTA
CTCTTACGTATAATAGATTGAGGAGCCCGACGTAAGCGCAAGGCTTGTGA
TTGTGTCAAGCAGACAGACCACGGGTCAGACCTGTCGCGTTGGTTTGCAT
CGCCACGTTCCCGCGACGTTCCATGCGTGTAATCGAGTTTGAACATATCG
CAAAACGTGGGGATCGCTGTTTCTCCGAAGTCGGCGCGAGACGGCGAAGT
CGCCGACTCGATTTCAGCCAAACTGCCTCTTAATCACCATATTATTTATT
ATTTCTATGATAACTGAGAGCGAGATAGGTTTTGGCCTCTATTCTTAACA
ATTGCTCGATGTTGGTGCAAGGTGGAGGACGTGCGTCCGTAAATACTTGG
ACTCCAGAAATAGTACCCTGGTACACCAAAACCCATGCATGGGGAAAGAA
AATTATCAAACCGGAAAAAAAGCAAACAAATCAGAAAGCAGACAGGGTGC
GACAGATTCGACAGCGGTTGTATTGATGCCCAGAGGGTCATTGCGAAAGA
GTCAGTATCCAGTTTGCGAAGGATTATACAAGGATGTACCACCCCGCAAT
CTTCACCAACGCTCGTTATCCGATACGCGTAACATTTTGTCTGACAAAGC
CATGTTTGCTATCATCTCAGCTCCTCCAAGTCGTGAATGCTTGTGCTCGT
TAAGATTCGGGATGCGGATGATGGTGGTCTCTAACGCTCAGCCCTTCAGC
AGTTTTTATTTTTCTTTCTTTTTCCATCTGCCAACTTGCCGGGGTAACAC
CTCGAAAACAAGACAAAACTGCAAAATCATGTAATATCTGGTGCCATTAT
TTGTAAATAGCTAAAAAAAAAGTGCTGACCACGCAGCACGCACGTGCTCC
AGTATAATTAAACACTGTGTAATAATACTGCTGTGTACTAAAGCATCCTG
GATGTACATTAATTAGTGTACAGTTATTTTCATACTACGGTAACTACGAA
AAAACTCGCAGGCTCTGGTCGTATGAGACCTGCCTCCAAGTTATGCTTGG
AATAGTTCTTTACCCGCAGTTCAACCATTTTACGGAAGTTCTGTTTTGGA
GAGTGGATTAAGATGAAAGTCACAGAGCAGTTGCGAAATCGAAGACCAAG
AGTCCAACGGGGAGTTTACTTCACTGCCCACCTGATCTCTCTCTCTCCGA
AGCTCCACGTGATTTACACTCGCCCTGGGTTCCGTCCTATATCTGGTTTC
CCCCGATTCGCCGGATCATTATTATGCTTAAATATCCCATCACGGACATG
CTCCGTAGACTCGAGGTGCTGCATATATGTGACCATACATACAACATACA
ATAAAACAAATGCCGTCGCCGTTCGAGGTCTAATAATAGTCGTAACTATG
ACTCTTTGGGCATGCAGACATGCGTCATCTCAGGGCAAGACGGAAAAGTG
AACATTGACCGTTCATGTCCTCGGTTGTCAGATCCCTGCCGCCTTGCCTA
TACGATCATATCTACCCTTCATTATCTCTGTCGAAATCATATCATCGCAC
AGCTTTGCCGTTCTCTAAACGCTTGATGTGAAAGATAGCGCTGCTCCTCA
CAGCTGACGTAGCTCGGTCCTAAGCTATCTTGCGGGCTGGACATGACTCT
CAAGCTTAAGGCGTAAGGTAAAAGGGCAAACATCGAAGCAGGTTCTGGCA
GTATCCTCCACTTGTTTTCTATACGTAAGCAGACGCAGGTTTCAGCACAG
AAATCTGCATACAGTATCCTAGATAACAGCATGTACAGCAGTAGAATATC
TAACGGGATCACGGAAGTTTTCGTGGTTGGATAATTAGAATGACTATTTG
TGGATGATAACTCCCATACAAAATGGTGCCCTGTCTGCCAGACCAGGGCC
GTATGATACGCCGTATGCCTGGCACGAGGAGACCTCGCCTACTTGGCGTC
TTGGGCACCCCCCCCCATCGTGCAGTAATGAGCTCTACGTTCTCATACGA
AACGGGTATTTTGCCTGTTTCGAGCTCCCGTCCAGGCAGTGTACACCTGT
CGACATGTTATCGCTGCGGTCCAGCGGAATGATTGCACTTTTTTGTGTCT
TGCCTCATGCACCACCAGTACTCTTGTGTTGAAAGATGACTTCCCCGTGC
AGTAATACTCTCTCTCCCATTTCGTCTAGTCTTGAAACCTCTGTTCCATT
ATAATGTGCTGTCACGCCGTTACTTTCAACATACCCACTTCATACCAATA
GTGGGGGTGGGAAAGAGAGGCGAATATTAATTGGTCCATGGTGACCTGCT
AAAGGCAGCACTCGTTCGGAACTTCCTTGAGGTTTACTGGCCCTGTGCCG
GTGGACTCTCGGCAGTGAACGCCATCGGGACGCAATTGCGTGACCCGATG
AACCTGGGATTGACCCGATGGCGTATGGCGGTTTCATAAATGGACGCCGC
CGCGGAACTCGGGAGCAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGT
ATGGAGATGAGCAGGCTGACGCGGGACGGGACGGCTGAACCCGTCTCGCG
AGACCAAATTCTCAGGCACGCACGGGGACAGGGGAATATTATTTTCCCTG
TTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTGATCCATACT
CTGCTATATGTGATGACCATACATACATACTGTACTGCAAGTACAGGTTA
AGTACTTTTTCTTACATATCCCCCCCCCATCATCAGCACAAAAAATATCT
TACCTGTAGTCTACTGTACTGTATTGTACTGTATGCTAAACTTGTCCCGT
CAGTCCCTGCAGCTGCAACTCCCTCTTAGGTTTGTCACCTCTAGAGCTTG
TACCAAAGCCTGTACAACAGTTACTTGCGGTGGCCATCACAACCAGACTA
TTACAGTGTCTTGGGGATTTTTTGGCTCCGTTCCTGCGGTGCGAGAGAGG
AAGCACTCCCACTCCTCTGGTCGAAGTACATGGATCCCCTCAGCAGGGCA
GTCTGTCGGGAGTCGATGAATCCTCTCCTACTTTTAAAACCCCTTTACAG
TTTTATCAATAGTCCCTTCAGAAAAGTAGCGTCATCCGTGGAATTTTCTC
CTTGTTGATGTGAACGATACGGGTATATAACGCAATAGATACGGCAGTGA
CAACTCCAGTGCAGCCCTCAATCCTGACGTCCACGATCAGTAGTTTGCAG
TGTCAGAGGATCTCTGTAATCCGAAAACTAACAACAGTGATCTGTCACAA
GTCAGTATCTTGTTTTTAAAGAAAAATCAGAAACGGAGTCAGTCAGTATC
TTGTTTTACAGCAACAGCAGTAGTTAGTTGGTGCAGTACATACTATTAAT
AAGATAGTCAGTACCTGGTACTCCTCAGTCCTATCAACGACTGCAACCCT
CCGCCTTCGTGTCGTTGGAATTTTGAATCTTGCAACTGGCCTGTACTACA
TTCATAATGTACAAAGAAACACAGCACAAACAGTAGTCTCTAAATCTTCA
ACTGTATACAAGTATCAATACTCGTACAGGACAGCCTGTTCCTTTCTGGG
ACACCAACGGGACCTACCTGCCGCTGTCGGTACAGCAGCACTAGTCTATA
CTGTGTACATGGCTCGGTACCAGTAACGGTTACCTGTATGTCCCGTCTCT
TTTGTCGCGAATACAGTTATATTGATAGGTGGCGCCGGTTCATCGTTGAC
ACGAACCCGTCCGGCGCCACAGATAATATTAATTTCCCTGTTCAGCTGAT
CGCGAGCAGGATTGGCAACTTTACACCCCCCGAGTGACCCGTACTACACA
TACATAAAGACAAAAAAAAAATGAACATCTCGGGTATACAGAATAGCACT
CCCGTACACACACACACACCCCACTTACTTTTATTATAGTGTCTGCACAG
TACGGAATCAGGCACTGCAGGCTTCAGTTATCAATATGATAGTCATGTTC
AACAGTAAAGTGCACGTACACCAAAAGGTAGACATTATGGTTATGTATCA
CTGCTTCTGATTCTGCTTCTGCTTCCGTGTGTCGTCTTGTTGCTGTTCCT
GACGTTTCTCTTCGGCGACAACAATTGTTATGTACGGTGCACGGTGCGTT
ATGTACGGCAGAAATGGTTGACGTCAAGAACAAGCGGTGCGAGGCAGATG
GATGCATGAAGCGAGGGCTTTTCGGCTATGATGGTGAACGCGCACGCTTC
TGTGGCGGACACCGCCTTGAAGGTCCGGTCCCTCTGCCTCCAATGTAAAA
CCTTGCTGATTTTCTTCGGTTATCCATTACCTGGTATTCTTTTATTCGGG
TTTCCTGATCCAGTTATCCTATTACTCGTACATTGTAGTAGCCCGCAGAG
CGAAACGCAACGAAACGAATGTACAGTAATTTCATTGGAATACTACTGTA
CTTGAGTATGTTTTTTTGTTTTTGTTTTTTTGCGCGGGTGCCGTTTCAGC
ATGCCGTGAAGTATAGCAAACGTAGTACAGGCAGTGCATGGACAGCAGTA
GCTAATAGGCGGAAGAGAGATGTCGTCCCCTCCTCCCCACTGATCTTGCA
AGAATTTCGATGTTCTATGTTCTATGTCCTATGTCCCGCGGGTCACGTTG
TGCTCGCATCGCATCTCCCTGTGCGCGCACGGAAAAAACGGGCGATTGCA
TCAGATGCCGCCGGAGAGGGTGCCTTACCTTTTTTACGCACACTGGTGCT
TGCTTTACAAATATACCTTAGATTATTTGTGCATAGCACCAAGTATAGTT
TATAGTCTGAATACAGTACGAGCGATACGGTTTCTTTACACACGCCCTCG
AGATCTCTGGTCTACACCTAGAGCTATGCATACATGACTGCTGTTCACAT
TTGCTCCATGATGAAAGTCTTCTCCCTCGCTCGGAGATATACACGAGAGT
TTAGGTACTGTTGCCGATACACTACATAATGCTGTTAGGTTACCATAATA
GAACAGCGGCATACAACAGTTGAAACACGAGATATCTTCCCCCAAGGTAG
AGCAGCTACTAGTACATAATAGCTGTGGCTGTTGGTTAACACAATCGCCT
ATTATAGCTAAATAACTTCACATATACAGGACCTGTCCAGTACTGTACCT
AGGAGAAACGCTTTGTTGATGTCAACAAGTTACGCCACGTCTGTGGCATG
GTTAATGTACACCGACAGCTGCTCCCCCAACGACTTTGTGTGTCGAAAAG
TTTAAGACGTGTCGACGATTGCCACGGGGAGAGAAAATGACTCATACTAT
TAAATAGTACCTGGTACAGCATATCGGATGACGCGGACGAGGTTCTGTAG
AAGGCGAGGGTAAGGACGTGATTTCCCGAAAACACTTAGAAATCTGATCC
CATTGAATGTCAATCTACATGGTTGCCTTGTTGAGTAGCTCTACCGCCTT
TCCTTATTCCTCGGTGTGTCACACCCTTTTTCCTTTGCCCTTTCGCAGGG
ATGGTCGATCTCAAAAACAAGCGCTGCAAGTGGGTGGGGTGCGCAAAGCA
GGTGAACGCCCGAACAAGCTAGTTCTTCCGAATCGTACGGTTACTGCAAT
GTACGGTAGTTGTAGCAGTATATATAATATTCCATGCCCACCCCTCACCC
CGGAACCCAAATATCTCCTTTTAAATCCTGGATGAGGTGGTTGTCCATTC
CATCCGCGAAGCAGCCCTCAAAAGGAGGTGTGGTCTTGCCAACCTGTCGC
GCAACGTTACCTTTGCTCACGCACTGCAGGCGAACTTCGCGGCGGAGGGC
AAGTCTACCGCCTGCTTCTGCGGCGAGCACAAGTCACCGGGTATGGTTGA
CGTCAAAGGCCGTCGCTGCGAAGTAACGCACTGCACCAAGGTGGCTGGGT
TCGGCCTGCTTGACCACCAGCCCACCGCGTGTGCCATGCACCGAGGCCCC
GGCATGGTGGACATGAAGCAGCGTGTACGCCTCGGTGGCGGCAAGGCTGG
CGGTATTAACGTGAAGATCGGCGGGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig691:186753..193329-

>mRNA_F-serratus_M_contig691.18008.1 ID=mRNA_F-serratus_M_contig691.18008.1|Name=mRNA_F-serratus_M_contig691.18008.1|organism=Fucus serratus male|type=CDS|length=1386bp|location=Sequence derived from alignment at F-serratus_M_contig691:186753..193329- (Fucus serratus male)
GCCTGGCCTTCTACACTCTGGGCCCACAAGAAGTCAGCAAGTATCCAGCT
GGGAGTGCCCAATTTAAGGCTTGTGCGACATCCTTGCCACGAGAGGACAA
TGATCGCGACGACTAATGATTCGTTCACAGGTGACAAGATTCCAGCCAAG
CGCACGAAAACTGTACTGAAAGCCCCGAGCAGGCGGGTTGCTCGCACTTG
CCACGACCCAGCCTGCAACAAGAATCCCTACTTCGGCTGGCACGGACAAA
AGGCCCTCTACTGCGTCACGCATAAAGAGCCAGGCCTGGCCTTCTACACT
CTGGGCCCACAAGAAGTCAGCAAGTATCCAGCTGGGAGTGCCCAATTTAA
GGCTTGTGCGACATCCTTGCCACGAGAGGACAATGATCGCGACGACTAAT
GATTCGTTCACAGGTGACAAGATTCCAGCCAAGCGCACGAAAACTGTACT
GAAAGCCCCGAGCAGGCGGGTTGCTCGCACTTGCCACGACCCAGCCTGCA
ACAAGAATCCCTACTTCGGCTGGCACGGACAAAAGGCCCTCTACTGCGTC
ACGCATAAAGAGCCAGAAATGGTTGACGTCAAGAACAAGCGGTGCGAGGC
AGATGGATGCATGAAGCGAGGGCTTTTCGGCTATGATGGTGAACGCGCAC
GCTTCTGTGGCGGACACCGCCTTGAAGAAATGGTTGACGTCAAGAACAAG
CGGTGCGAGGCAGATGGATGCATGAAGCGAGGGCTTTTCGGCTATGATGG
TGAACGCGCACGCTTCTGTGGCGGACACCGCCTTGAAGGGATGGTCGATC
TCAAAAACAAGCGCTGCAAGTGGGTGGGGTGCGCAAAGCAGGGATGGTCG
ATCTCAAAAACAAGCGCTGCAAGTGGGTGGGGTGCGCAAAGCAGGCGAAC
TTCGCGGCGGAGGGCAAGTCTACCGCCTGCTTCTGCGGCGAGCACAAGTC
ACCGGGTATGGTTGACGTCAAAGGCCGTCGCTGCGAAGTAACGCACTGCA
CCAAGGTGGCTGGGTTCGGCCTGCTTGACCACCAGCCCACCGCGTGTGCC
ATGCACCGAGGCCCCGGCATGGTGGACATGAAGCAGCGTGTACGCCTCGG
TGGCGGCAAGGCTGGCGGTATTAACGTGAAGATCGGCGGGGCGAACTTCG
CGGCGGAGGGCAAGTCTACCGCCTGCTTCTGCGGCGAGCACAAGTCACCG
GGTATGGTTGACGTCAAAGGCCGTCGCTGCGAAGTAACGCACTGCACCAA
GGTGGCTGGGTTCGGCCTGCTTGACCACCAGCCCACCGCGTGTGCCATGC
ACCGAGGCCCCGGCATGGTGGACATGAAGCAGCGTGTACGCCTCGGTGGC
GGCAAGGCTGGCGGTATTAACGTGAAGATCGGCGGG
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