mRNA_F-serratus_M_contig690.17996.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig690.17996.1
Unique NamemRNA_F-serratus_M_contig690.17996.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig690.17996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig690contigF-serratus_M_contig690:292530..295351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size370
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932110.7154663-CDS-F-serratus_M_contig690:292529..2927871622932110.7154663-CDS-F-serratus_M_contig690:292529..292787Fucus serratus maleCDSF-serratus_M_contig690 292530..292787 +
1690964152.3170633-CDS-F-serratus_M_contig690:292529..2927871690964152.3170633-CDS-F-serratus_M_contig690:292529..292787Fucus serratus maleCDSF-serratus_M_contig690 292530..292787 +
1622932110.8042495-CDS-F-serratus_M_contig690:295240..2953511622932110.8042495-CDS-F-serratus_M_contig690:295240..295351Fucus serratus maleCDSF-serratus_M_contig690 295241..295351 +
1690964152.329859-CDS-F-serratus_M_contig690:295240..2953511690964152.329859-CDS-F-serratus_M_contig690:295240..295351Fucus serratus maleCDSF-serratus_M_contig690 295241..295351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig690.17996.1prot_F-serratus_M_contig690.17996.1Fucus serratus malepolypeptideF-serratus_M_contig690 292530..295351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig690.17996.1

>prot_F-serratus_M_contig690.17996.1 ID=prot_F-serratus_M_contig690.17996.1|Name=mRNA_F-serratus_M_contig690.17996.1|organism=Fucus serratus male|type=polypeptide|length=123bp
VRSRGRRRADKYNTMALRHFGAGRLRAMSVSRFMSLLRPHTTVAKAGGTR
ERATVVDKREKASVIASDVTTKFGDPSFWEGQYSSQCESPEELEPFEWFL
PYEGGLQQHLLLFLESLPSCNR*
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mRNA from alignment at F-serratus_M_contig690:292530..295351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig690.17996.1 ID=mRNA_F-serratus_M_contig690.17996.1|Name=mRNA_F-serratus_M_contig690.17996.1|organism=Fucus serratus male|type=mRNA|length=2822bp|location=Sequence derived from alignment at F-serratus_M_contig690:292530..295351+ (Fucus serratus male)
GTACGAAGCAGGGGGAGGAGAAGGGCAGACAAATATAACACCATGGCTCT
CCGACACTTCGGGGCTGGGCGGTTGAGGGCGATGAGCGTGTCGCGTTTTA
TGAGCTTGCTGCGTCCACACACTACCGTGGCTAAGGCAGGGGGGACAAGG
GAGAGGGCTACGGTCGTGGACAAGAGGGAGAAGGCTTCCGTAATTGCCTC
GGACGTTACGACGAAGTTTGGCGACCCGTCTTTTTGGGAGGGACAATACT
CGTCTCAGGTACTTGTTACGAGTTACGAGTTAAGGCTGCAGTTAACATGG
TATGAAATTTTATCGAAGAGTTGGATGTTTTGGGGGGTGTTCCGTTTCAC
ATGAAATTTGTGCTTAAGGGCCGCATTCGTTTATTTTTCAGGTCTCTCCG
GGACACTTTTAATTTATGCGCTGGTCTTCATCGTTCGAACTGAGAGGGGA
TGATGACAGTGCTACAAGTACCGTTGCTGTAATACGAATGTCTCTCAAAA
AGAATGCGTGGCTATCACATGTACTGAGTAAATAACAGAGTAAGGATCAA
CCGCGGGTGAGGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGAGAAAAC
CAATATTTCCCTGTTTGTCCCCGTTCGCGCCTGAGAGTTTGGTAACGCGA
GACGCGTTCGGCCGTCCGGTCCCGCGTCAGCCTGCTCATTCTCCACTCCG
ACTGATTATGGCAGTGTAAAGTTCCAGCCCCTGGTCACAAGATAGAAAAG
ATAGAAAAGATCGAAAAACATCATTCCGGAAGGGAAAAACGTACACTCTT
CCACGAATTTTACTTTGAGTACTGTACTCGGTACATACACTATATACTAG
TCTACTGCTGTAACAACGAATGCCATGAAGAGGTTTTGTATTTGCAGCCT
ATGATCCCACCTAAACGTTTTGACATTTTTCCCCCTGACTGGGGGATGCT
CAGAAGGTCTAGGCGCGTTCTGTTGCTTTGGTGGCAAGCCCGAAAAACTA
CTTTACACGGTAGCCAATCCCGCTTTGTAGAGTACAGTACAATGTAGTAC
CTGGTACAGTGCAATAGTAACAATATAAGATGATAGTGCCATGCCCACAA
TCCTGTTACACAATATGAAGTTATAGTGTGCAATATAACGTTATTATAGT
ATTCAACTTTGTGTTAGTACTGCTGAAACAGCAGTACATAGTGTCTGGTA
GTTTTAAATACAAGTATAATTGTGTCTATTTGGGGAGGATTTTAGCCAAA
TCTCGGGTGTCATCTCGCTCTGCGGATTCAACAAAGTCGACGCTGTTACC
TTGAACATGCCGTCACCATAGACCATTGGAAGAAGCCCAAAACACTCAGC
GAACTCTGACTGGTGGCTGTGGTTCGCTCGCAAAAGTGTACAACGAGTAC
GGTCGGCGGCAGTCGAGGTGTTGAACTTGGGTCGCTGTAGTGCCGCACAA
GACTTCAAATACCAGTTGAAGAAACGATTTCTCCATCGCAGCGCTGTCCC
GCGCGCTAATTCCAGCGACAATGTCTACCTTACTCCCACATACGACTCTG
CCTGCAATTTGGTGAGCTCGAGTATTTCGTGTGGCGTGAGTGAATTGCGT
TTGAGCGGCTGAGACACGCTTTTGCACCAGATTGGGCACATCCGATGAGC
AAACACCACGACCGCCGTCCTCAGCCCACCACAACATTTTCGGCCACCGC
ACCGATGCAACTCGTTCACAATACCCTTGACTATAACATGTAGAAGAGTT
ACGTCGTCTAACTTGAGCACTCCGCCCAGGAGAGGGCAGGGCTGAAACAC
AGAGTCTCGAACGTTGCCTGCCTCTTTAGCGGACCCCAGGCAGTCGCTCG
GTTCGGAACAAATCTCACCAGCGACGATTGCACGCCACACAGTGTACGAA
AAGATACCAAACCTCCAGCAAATCCATGCATGTCAATAGGGAGCAGAGCC
GTACCTGGTGGGTCCGCTATCTCGTCTCGTGGGCAAACTTCCTTTTCAGC
TATTGCTGTGACGGACTGCCTTGCCTTTGACAAAAGCTGGAAATGGCCCA
AATAGCGCCATTTCATTGACGCAGACATTCGACCGCATTTTATTTTAAGT
CTTGATTTTGGGGTACAAAAAATAAAAAACGGGGATCGGGGAACAATCGT
GTTGACTGCAAACTTAAAGCGCAAGATACAGCTCAAGGTTCTTTTCCGCT
CTTCCTGTCGCCGAGTCGGCCTAGATGTGCATCTCTCGGACTCTCGCATC
AACTGAGCATTGGGAAACCTCATACCCAGATGTATGCATCTGAGCTAGTC
TAGGGCTCACCCCAACACACTAGGCGAGAGACCTTCTTTGCCATGTCCTT
CGAAGTACGTGAGTATGCGAAGACCAACGAACCGACAGTTTTACCGGGAA
ACCCCATTGAGGCATTTCAGCTGATTGATAGCGTGGATATACCAAAATAC
GTCAATATGCATGCACGAATGCATGGAAGTGTACCGGGTTGAGCCTTAAC
CTGAGCGACTTCCTAAACGTTACACTTGTTACAGTTTTTCTCCCATTCGC
AGCTCCTTCGTATGAAAAGGATACAAGTTCATTTCGCTTCTACCTTATTT
TACCTCGTTTTACCTTGTTATAGTCGCGCAAATATTGCAGAAACTACCCT
CGTTAACTACCTTACCAATATCCATGACCGAATATTTCATTCCCTACTGT
GTCCCGCCCAGTGCGAGAGCCCTGAGGAGCTGGAACCCTTTGAGTGGTTC
CTGCCGTACGAGGGCGGGCTCCAACAGCACCTTCTTCTCTTCTTAGAATC
CCTTCCTTCCTGCAATCGGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig690:292530..295351+

>mRNA_F-serratus_M_contig690.17996.1 ID=mRNA_F-serratus_M_contig690.17996.1|Name=mRNA_F-serratus_M_contig690.17996.1|organism=Fucus serratus male|type=CDS|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig690:292530..295351+ (Fucus serratus male)
GTACGAAGCAGGGGGAGGAGAAGGGCAGACAAATATAACACCATGGCTCT
CCGACACTTCGGGGCTGGGCGGTTGAGGGCGATGAGCGTGTCGCGTTTTA
TGAGCTTGCTGCGTCCACACACTACCGTGGCTAAGGCAGGGGGGACAAGG
GAGAGGGCTACGGTCGTGGACAAGAGGGAGAAGGCTTCCGTAATTGCCTC
GGACGTTACGACGAAGTTTGGCGACCCGTCTTTTTGGGAGGGACAATACT
CGTCTCAGGTACGAAGCAGGGGGAGGAGAAGGGCAGACAAATATAACACC
ATGGCTCTCCGACACTTCGGGGCTGGGCGGTTGAGGGCGATGAGCGTGTC
GCGTTTTATGAGCTTGCTGCGTCCACACACTACCGTGGCTAAGGCAGGGG
GGACAAGGGAGAGGGCTACGGTCGTGGACAAGAGGGAGAAGGCTTCCGTA
ATTGCCTCGGACGTTACGACGAAGTTTGGCGACCCGTCTTTTTGGGAGGG
ACAATACTCGTCTCAGTGCGAGAGCCCTGAGGAGCTGGAACCCTTTGAGT
GGTTCCTGCCGTACGAGGGCGGGCTCCAACAGCACCTTCTTCTCTTCTTA
GAATCCCTTCCTTCCTGCAATCGGTGATGCGAGAGCCCTGAGGAGCTGGA
ACCCTTTGAGTGGTTCCTGCCGTACGAGGGCGGGCTCCAACAGCACCTTC
TTCTCTTCTTAGAATCCCTTCCTTCCTGCAATCGGTGA
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