mRNA_F-serratus_M_contig690.17995.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A6H5JSK3_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSK3_9PHAE) HSP 1 Score: 177 bits (448), Expect = 1.760e-51 Identity = 83/156 (53.21%), Postives = 110/156 (70.51%), Query Frame = 1
Query: 217 RGGTSRWRTALGSSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFGD----------------SSSKDLGSGQPEVPSACKP 636
R + R TA+ + R VT EELE E+T+WELP+ILDVFATWCGPC+++KPEI K++QAL+GKCRVLK+D+DEEE M L ++GLPTV+YMKDG+++ RTEG +PA+E+L+LAD+HLFG + K S + PSAC P
Sbjct: 58 RATSRRGSTAMQVAARLVTGEELEVELTEWELPMILDVFATWCGPCIQLKPEIEKLSQALEGKCRVLKLDSDEEEDMAGALNIYGLPTVIYMKDGKIQHRTEGFLPAEEMLQLADIHLFGKPPPEVTDPADDLFIDADACKPPASAAGDAPSACTP 213
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A7S2V5P5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P5_9STRA) HSP 1 Score: 136 bits (343), Expect = 5.810e-36 Identity = 55/108 (50.93%), Postives = 81/108 (75.00%), Query Frame = 1
Query: 250 GSSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLF 573
G R VT EELE E TDW+ P++LD++ATWCGPCL + PE++KVAQ + RVLKMD++ E ++ KV GLPT+++++DG++K R EGA+P +E++++ D HLF
Sbjct: 90 GPKARSVTGEELEVEFTDWDTPMVLDIYATWCGPCLILAPELDKVAQHFGDRLRVLKMDSEAEPEISGAFKVRGLPTIMFLQDGEIKARIEGALPGEELIKIVDYHLF 197
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A835Z7J6_9STRA (Thioredoxin-related protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7J6_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.810e-35 Identity = 63/137 (45.99%), Postives = 95/137 (69.34%), Query Frame = 1
Query: 244 ALGSST----------RKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFGDSSSKDLGSGQPEVPS 624
A+GSS+ R++T E E E+ D P++LD+FA WCGPC+ + PE+ K A+ L G+ RVLK+D+D+E+A+T+ L+V+GLPT+LY+KDGQ+ +RTEGAMPA+ ++ +A V L LG+ +P+ PS
Sbjct: 48 AIGSSSGAGALRMGAVREITGAEFEVELADTSSPILLDIFAVWCGPCVMLAPELEKAAEELGGQVRVLKIDSDKEDAITSALRVYGLPTLLYIKDGQIVYRTEGAMPAEAIVEVASVKL--------LGAPEPDDPS 176
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A7S3T121_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3T121_9SPIT) HSP 1 Score: 121 bits (303), Expect = 1.740e-30 Identity = 59/124 (47.58%), Postives = 78/124 (62.90%), Query Frame = 1
Query: 226 TSRWRTALGSSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFGDSSSKDL 597
TSR L ++ RKVT E E E+ D P++LDVFA WCGPC M P++ +VA+ L K RVLK+DADEE + +TL + GLPTVL + D V R EGA+ A E+L + + H FG K +
Sbjct: 48 TSRSAPPLMAAVRKVTTAEFEEELQDCSTPILLDVFAVWCGPCQLMAPQLEQVAEKLGDKVRVLKVDADEEPEVADTLMIRGLPTVLLINDMSVVMRAEGALMADELLEIVNYHFFGGPKPKSM 171
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A7S3TU68_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TU68_EMIHU) HSP 1 Score: 120 bits (301), Expect = 2.530e-30 Identity = 60/122 (49.18%), Postives = 79/122 (64.75%), Query Frame = 1
Query: 244 ALGSSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFGDSSSKDLGSGQ 609
A+G+ R+VT EE E E+ D P++LDVFA WCGPC M PE++KVA+ +CRVLK+DAD+E + +TL+V GLPTVL + D V R EGA+ A E+ + D H FG L S Q
Sbjct: 46 AMGA-VRQVTTEEFEAELQDCATPILLDVFAVWCGPCQLMAPEMDKVAEHYGDRCRVLKIDADDEAEVADTLQVRGLPTVLLINDMSVVMRAEGALMADELKEIVDFHFFGGPKPSLLESEQ 166
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A7S0HGI7_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HGI7_9EUKA) HSP 1 Score: 118 bits (295), Expect = 2.400e-29 Identity = 60/134 (44.78%), Postives = 78/134 (58.21%), Query Frame = 1
Query: 208 AHFRGGTSRWRTALGSSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFGDSSSKDLGSGQ 609
A GG SR R+V E E + D P+ILDVFA WCGPC M P++ VA+ L K RVLK+DAD+E + +TL+V GLPTV+++ D V R EGA+ A E+ LAD HLFG + G+
Sbjct: 35 ARVSGGVSRCAAPQMGKVRQVNTAEFEEAIQDCSTPIILDVFAVWCGPCQLMAPQLEIVAEKLGDKVRVLKIDADDEPVVASTLRVQGLPTVMFISDMSVVMRAEGALMADELEALADHHLFGGPPPPQIEGGE 168
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A7S4HFL5_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HFL5_9EUKA) HSP 1 Score: 115 bits (288), Expect = 2.170e-28 Identity = 52/113 (46.02%), Postives = 75/113 (66.37%), Query Frame = 1
Query: 238 RTALGSSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFG 576
R+ R+VT E E E+ D P+++DV A WCGPC M P++ +VA+ L+GKCRVLK+D+DEE + NTL++ GLPT+L + D + R EGA+ A E+ +L + H FG
Sbjct: 41 RSVTMGLVRQVTTAEFEEEIQDCSTPILVDVMAVWCGPCQLMAPQLEEVAKRLEGKCRVLKVDSDEEPDVANTLQIRGLPTILLINDMSIIMRAEGALMADELEQLVEHHAFG 153
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A7S4B483_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B483_CHRCT) HSP 1 Score: 112 bits (281), Expect = 3.750e-27 Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = 1
Query: 262 RKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLF 573
RKV + E E+ D P+++D+FATWCGPC M P++ K A+ L +CRVLK+DADEE + + L + GLPTVL + D +V R EGA+ + E+L+LA+ H F
Sbjct: 66 RKVDTAQFEEEIQDCATPILVDIFATWCGPCQLMAPQLEKAAETLGDRCRVLKIDADEEPEVASALAIQGLPTVLLINDMKVVMRAEGALMSDEILQLAEHHFF 169
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A4D9CS93_9STRA (Thioredoxin domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CS93_9STRA) HSP 1 Score: 108 bits (271), Expect = 8.660e-26 Identity = 50/108 (46.30%), Postives = 74/108 (68.52%), Query Frame = 1
Query: 253 SSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFG 576
S KVT EELE ++ + P++LDV+A WCGPC + E++KV K RVLK+D+DEE + + LKV+GLPT+ ++++GQ+ R EGAMPA E+ +L + + FG
Sbjct: 57 SGVLKVTGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCFG 164
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A2J7ZQ73_9CHLO (Thioredoxin-like protein CITRX, chloroplastic n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZQ73_9CHLO) HSP 1 Score: 107 bits (266), Expect = 6.660e-25 Identity = 50/136 (36.76%), Postives = 81/136 (59.56%), Query Frame = 1
Query: 217 RGGTSRWRTALGSSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYM--KDGQVKFRTEGAMPAQEVLRLADVHLFGDSSSKDLGSGQPEV 618
+G +R K+T+EELE + E +I+D FATWCGPCL + E+ KVA+ +DGK +V+K+D DE + N LK+ GLPT++++ ++G+ RTEG +PA +++ + G ++ + S PE
Sbjct: 49 QGSAARRSVVARGMVEKITSEELEVAIATRETTIIVDFFATWCGPCLLLAKELEKVAETMDGKVKVVKIDVDENPDLANMLKIQGLPTIVFIPKENGKPALRTEGWLPAAQIMEIVGQMDAGQVAAPPMPSAAPEA 184 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig690.17995.1 >prot_F-serratus_M_contig690.17995.1 ID=prot_F-serratus_M_contig690.17995.1|Name=mRNA_F-serratus_M_contig690.17995.1|organism=Fucus serratus male|type=polypeptide|length=220bp MSSSTTIPAFLLLLLLGALTRGFSFLTPPLAPAGSSMEVSSRRRESCTQGback to top mRNA from alignment at F-serratus_M_contig690:270579..279754+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig690.17995.1 ID=mRNA_F-serratus_M_contig690.17995.1|Name=mRNA_F-serratus_M_contig690.17995.1|organism=Fucus serratus male|type=mRNA|length=9176bp|location=Sequence derived from alignment at F-serratus_M_contig690:270579..279754+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig690:270579..279754+ >mRNA_F-serratus_M_contig690.17995.1 ID=mRNA_F-serratus_M_contig690.17995.1|Name=mRNA_F-serratus_M_contig690.17995.1|organism=Fucus serratus male|type=CDS|length=1320bp|location=Sequence derived from alignment at F-serratus_M_contig690:270579..279754+ (Fucus serratus male)back to top |