mRNA_F-serratus_M_contig69.17973.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig69.17973.1
Unique NamemRNA_F-serratus_M_contig69.17973.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig69.17973.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 6.540e-21
Identity = 50/121 (41.32%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:   88 VWIADSGASCHMTHKKTRMYNVRSPPPGRET-VTIGDRRRISVEYMGNMDVIFHGKTDMRITLIDVAYVPDLGFNLYSLHAVQRTQLIVSDASGTHITGANLTFSRSSSGSYLRATRLPAG 447
            VWI DS ++ H T   T +YN R PP   ET + IGD R++  E  G++DV+FH + D+ +T+ D+A VPDL F+L SL+ +Q T  ++ +++GT I    + FS+  +G+Y++ATR+  G
Sbjct:   15 VWIGDSASTVHATSDGTHVYNTR-PPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETHDLLLNSAGTWILNGRVHFSKLPTGNYIQATRIAHG 134
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BLAST of mRNA_F-serratus_M_contig69.17973.1 vs. uniprot
Match: A0A8K0G8N2_9COLE (Uncharacterized protein n=2 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0G8N2_9COLE)

HSP 1 Score: 57.4 bits (137), Expect = 1.920e-6
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:   76 NEDDVWIADSGASCHMTHKKTRMYNVRSPPPGRETVTIGDRRRISVEYMGNMDVI-FHGKTDMRITLIDVAYVPDLGFNLYSLHA 327
            N+D+ WIADSGAS H++H+K    N        E + IG+   I+    G + +I F G+  +   L DV YVPD+ FNL+S+ A
Sbjct:  295 NDDETWIADSGASEHLSHQKEWFENYYEFDKPTE-IKIGNGSVINAHGKGKISLIAFDGQDYILTELNDVLYVPDIKFNLFSIGA 378
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BLAST of mRNA_F-serratus_M_contig69.17973.1 vs. uniprot
Match: A0A8K0DN47_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0DN47_9COLE)

HSP 1 Score: 57.0 bits (136), Expect = 2.780e-6
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:   76 NEDDVWIADSGASCHMTHKKTRMYNVRSPPPGRETVTIGDRRRISVEYMGNMDVI-FHGKTDMRITLIDVAYVPDLGFNLYSLHA 327
            N+D+ WIADSGAS HM+++K    N        E + IG+   I+    G + VI F G+  +   L DV YVPD+ FNL+S+ A
Sbjct:  286 NDDETWIADSGASEHMSNQKEWFENYYEFDKPTE-IKIGNGSVINAHGKGKISVIAFDGQDYIPTELNDVLYVPDIKFNLFSIGA 369
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BLAST of mRNA_F-serratus_M_contig69.17973.1 vs. uniprot
Match: A0A1J6IRJ9_NICAT (Uncharacterized protein (Fragment) n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IRJ9_NICAT)

HSP 1 Score: 54.3 bits (129), Expect = 5.030e-6
Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:   85 DVWIADSGASCHMTHKKTRMYNVRSPPPGRETVTIGDRRRISVEYMGNMDVIFHGKTDMRITLIDVAYVPDLGFNLYSLHAV 330
            D+WI DSGAS HMT++K+ + NVR+ P     VT+ +  R+ V  +G+  +         +TL+ V YVP   +NL S+H++
Sbjct:   31 DLWILDSGASNHMTYRKSFLKNVRTLPYP-FLVTLPNGYRVKVTEIGDASL------GPMLTLVRVLYVPTFKYNLISIHSL 105
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BLAST of mRNA_F-serratus_M_contig69.17973.1 vs. uniprot
Match: A0A0J7KFP4_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KFP4_LASNI)

HSP 1 Score: 55.8 bits (133), Expect = 6.760e-6
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:   76 NEDDVWIADSGASCHMTHKKTRMYNVRSPPPGRETVTIGDRRRISVEYMGNMDVIFHGKTDMRIT---LIDVAYVPDLGFNLYSLHA 327
            N  DVW+ADSGAS HMT ++     + S       VT+G+ + I    +G  ++ F  +   +IT   + DV YVPD+  NL+SL A
Sbjct:  163 NNKDVWLADSGASDHMTSREEWFTKLESVGDRERPVTLGNNKVIFA--IGKGEIQFEARVADKITKYTMADVLYVPDISRNLFSLGA 247
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BLAST of mRNA_F-serratus_M_contig69.17973.1 vs. uniprot
Match: A0A3S4Q8K1_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S4Q8K1_9ACAR)

HSP 1 Score: 54.3 bits (129), Expect = 2.470e-5
Identity = 33/94 (35.11%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:   73 SNEDDVWIADSGASCHMTHKKTRMYNVRSPPPGRETVTIGDRRRISVEYMGN-MDVIFHGKTDMRITLIDVAYVPDLGFNLYSLHAVQRTQLIV 351
            S++   WIADSGAS H++  K  + + +     RE + I + + I+VE +GN +  +F GK     T+ +V YVP+ G NL+S+ A      +V
Sbjct:    4 SDKSVAWIADSGASEHISFHKEWLQDFKPIETKRE-LRIANNKVINVEGVGNILATVFDGKRWSNATIYNVLYVPESGVNLFSIGAAADKGYVV 96
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BLAST of mRNA_F-serratus_M_contig69.17973.1 vs. uniprot
Match: A0A5E4GDL5_PRUDU (PREDICTED: poly (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GDL5_PRUDU)

HSP 1 Score: 52.8 bits (125), Expect = 6.080e-5
Identity = 31/100 (31.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:   82 DDVWIADSGASCHMTHKKTRMYNVRSPPPGRETVTIGDRRRISVEYMGNMDVIFHGKTDMRITLIDVAYVPDLGFNLYSLHAVQRTQ--LIVSDASGTHI 375
            DD+WIADSGAS HMT+  + M N+ +P    +T+ IG+   +S+ ++G   +         + L  + +VP L  NL S++ + +     ++ DAS  ++
Sbjct:   11 DDLWIADSGASHHMTNTLSNMTNI-APYTSGDTIKIGNGEGLSISHIGTASL-------SGLHLNTIYHVPQLATNLLSVYQLCKDNNCWVIFDASNVYV 102
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BLAST of mRNA_F-serratus_M_contig69.17973.1 vs. uniprot
Match: A0A5E4FW64_PRUDU (PREDICTED: Retrovirus-related Pol poly from n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4FW64_PRUDU)

HSP 1 Score: 52.8 bits (125), Expect = 7.610e-5
Identity = 31/100 (31.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:   82 DDVWIADSGASCHMTHKKTRMYNVRSPPPGRETVTIGDRRRISVEYMGNMDVIFHGKTDMRITLIDVAYVPDLGFNLYSLHAVQRTQ--LIVSDASGTHI 375
            DD+WIADSGAS HMT+  + M N+ +P    +T+ IG+   +S+ ++G   +         + L  + +VP L  NL S++ + +     ++ DAS  ++
Sbjct:   11 DDLWIADSGASHHMTNTLSNMTNI-APYTSGDTIKIGNGEGLSISHIGTASL-------SGLHLNTIYHVPQLATNLLSVYQLCKDNNCWVIFDASNVYV 102
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig69.17973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE6.540e-2141.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A8K0G8N2_9COLE1.920e-640.00Uncharacterized protein n=2 Tax=Ignelater luminosu... [more]
A0A8K0DN47_9COLE2.780e-641.18Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A1J6IRJ9_NICAT5.030e-637.80Uncharacterized protein (Fragment) n=1 Tax=Nicotia... [more]
A0A0J7KFP4_LASNI6.760e-637.93Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A3S4Q8K1_9ACAR2.470e-535.11Retrovirus-related Pol polyprotein from transposon... [more]
A0A5E4GDL5_PRUDU6.080e-531.00PREDICTED: poly (Fragment) n=1 Tax=Prunus dulcis T... [more]
A0A5E4FW64_PRUDU7.610e-531.00PREDICTED: Retrovirus-related Pol poly from n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig69contigF-serratus_M_contig69:307253..307794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.1
Seed ortholog evalue3.9e-08
Seed eggNOG ortholog5270.UM05425P0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Retrotransposon gag protein
EggNOG OGs38DPC@33154,3NUZ7@4751,3V2N5@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size544
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932106.8948133-CDS-F-serratus_M_contig69:307252..3077921622932106.8948133-CDS-F-serratus_M_contig69:307252..307792Fucus serratus maleCDSF-serratus_M_contig69 307253..307792 +
1690964150.1797497-CDS-F-serratus_M_contig69:307252..3077921690964150.1797497-CDS-F-serratus_M_contig69:307252..307792Fucus serratus maleCDSF-serratus_M_contig69 307253..307792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig69.17973.1prot_F-serratus_M_contig69.17973.1Fucus serratus malepolypeptideF-serratus_M_contig69 307253..307792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig69.17973.1

>prot_F-serratus_M_contig69.17973.1 ID=prot_F-serratus_M_contig69.17973.1|Name=mRNA_F-serratus_M_contig69.17973.1|organism=Fucus serratus male|type=polypeptide|length=180bp
SENGVGDVTVPGSYLHSAFVVQSGSNEDDVWIADSGASCHMTHKKTRMYN
VRSPPPGRETVTIGDRRRISVEYMGNMDVIFHGKTDMRITLIDVAYVPDL
GFNLYSLHAVQRTQLIVSDASGTHITGANLTFSRSSSGSYLRATRLPAGT
VGARRRQGGMLATNLLRRLGHPIPLRRSKS
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mRNA from alignment at F-serratus_M_contig69:307253..307794+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig69.17973.1 ID=mRNA_F-serratus_M_contig69.17973.1|Name=mRNA_F-serratus_M_contig69.17973.1|organism=Fucus serratus male|type=mRNA|length=542bp|location=Sequence derived from alignment at F-serratus_M_contig69:307253..307794+ (Fucus serratus male)
AGTGAGAACGGGGTAGGGGATGTTACTGTACCGGGTAGCTACCTACACAG
TGCTTTTGTAGTGCAGTCGGGTAGCAACGAGGATGATGTGTGGATTGCAG
ACAGTGGCGCGTCGTGTCATATGACGCACAAAAAAACGAGAATGTATAAT
GTGAGGTCCCCTCCGCCCGGTCGCGAAACAGTCACGATCGGGGACCGTCG
GAGAATCAGTGTAGAGTACATGGGAAATATGGATGTCATTTTCCACGGAA
AGACTGACATGCGGATAACGTTAATTGATGTCGCGTACGTACCAGATTTA
GGGTTTAACCTGTACTCGCTGCACGCTGTCCAGAGAACACAGTTGATAGT
GTCGGACGCATCTGGAACGCACATTACAGGAGCTAATCTGACGTTCTCCC
GCAGCAGTAGCGGATCATATTTGCGTGCCACCCGGCTCCCCGCCGGTACT
GTAGGAGCAAGACGGAGGCAAGGAGGCATGCTCGCAACTAACCTTTTAAG
GCGGTTGGGACATCCCATTCCACTCCGCCGCAGTAAATCCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig69:307253..307794+

>mRNA_F-serratus_M_contig69.17973.1 ID=mRNA_F-serratus_M_contig69.17973.1|Name=mRNA_F-serratus_M_contig69.17973.1|organism=Fucus serratus male|type=CDS|length=1080bp|location=Sequence derived from alignment at F-serratus_M_contig69:307253..307794+ (Fucus serratus male)
AGTGAGAACGGGGTAGGGGATGTTACTGTACCGGGTAGCTACCTACACAG
TGCTTTTGTAGTGCAGTCGGGTAGCAACGAGGATGATGTGTGGATTGCAG
ACAGTGGCGCGTCGTGTCATATGACGCACAAAAAAACGAGAATGTATAAT
GTGAGGTCCCCTCCGCCCGGTCGCGAAACAGTCACGATCGGGGACCGTCG
GAGAATCAGTGTAGAGTACATGGGAAATATGGATGTCATTTTCCACGGAA
AGACTGACATGCGGATAACGTTAATTGATGTCGCGTACGTACCAGATTTA
GGGTTTAACCTGTACTCGCTGCACGCTGTCCAGAGAACACAGTTGATAGT
GTCGGACGCATCTGGAACGCACATTACAGGAGCTAATCTGACGTTCTCCC
GCAGCAGTAGCGGATCATATTTGCGTGCCACCCGGCTCCCCGCCGGTACT
GTAGGAGCAAGACGGAGGCAAGGAGGCATGCTCGCAACTAACCTTTTAAG
GCGGTTGGGACATCCCATTCCACTCCGCCGCAGTAAATCCAGTGAGAACG
GGGTAGGGGATGTTACTGTACCGGGTAGCTACCTACACAGTGCTTTTGTA
GTGCAGTCGGGTAGCAACGAGGATGATGTGTGGATTGCAGACAGTGGCGC
GTCGTGTCATATGACGCACAAAAAAACGAGAATGTATAATGTGAGGTCCC
CTCCGCCCGGTCGCGAAACAGTCACGATCGGGGACCGTCGGAGAATCAGT
GTAGAGTACATGGGAAATATGGATGTCATTTTCCACGGAAAGACTGACAT
GCGGATAACGTTAATTGATGTCGCGTACGTACCAGATTTAGGGTTTAACC
TGTACTCGCTGCACGCTGTCCAGAGAACACAGTTGATAGTGTCGGACGCA
TCTGGAACGCACATTACAGGAGCTAATCTGACGTTCTCCCGCAGCAGTAG
CGGATCATATTTGCGTGCCACCCGGCTCCCCGCCGGTACTGTAGGAGCAA
GACGGAGGCAAGGAGGCATGCTCGCAACTAACCTTTTAAGGCGGTTGGGA
CATCCCATTCCACTCCGCCGCAGTAAATCC
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