mRNA_F-serratus_M_contig69.17971.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig69.17971.1
Unique Name	mRNA_F-serratus_M_contig69.17971.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig69.17971.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig69.17971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig69	contig	F-serratus_M_contig69:291244..294389 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal anchor
Exons	4
Model size	441
Cds size	438
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig69.17971.1	prot_F-serratus_M_contig69.17971.1	Fucus serratus male	polypeptide	F-serratus_M_contig69 291246..294389 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932102.9930205-CDS-F-serratus_M_contig69:291245..291302	1622932102.9930205-CDS-F-serratus_M_contig69:291245..291302	Fucus serratus male	CDS	F-serratus_M_contig69 291246..291302 -
1690964148.084363-CDS-F-serratus_M_contig69:291245..291302	1690964148.084363-CDS-F-serratus_M_contig69:291245..291302	Fucus serratus male	CDS	F-serratus_M_contig69 291246..291302 -
1622932103.031452-CDS-F-serratus_M_contig69:292100..292205	1622932103.031452-CDS-F-serratus_M_contig69:292100..292205	Fucus serratus male	CDS	F-serratus_M_contig69 292101..292205 -
1690964148.0942385-CDS-F-serratus_M_contig69:292100..292205	1690964148.0942385-CDS-F-serratus_M_contig69:292100..292205	Fucus serratus male	CDS	F-serratus_M_contig69 292101..292205 -
1622932103.0557535-CDS-F-serratus_M_contig69:292810..292895	1622932103.0557535-CDS-F-serratus_M_contig69:292810..292895	Fucus serratus male	CDS	F-serratus_M_contig69 292811..292895 -
1690964148.111734-CDS-F-serratus_M_contig69:292810..292895	1690964148.111734-CDS-F-serratus_M_contig69:292810..292895	Fucus serratus male	CDS	F-serratus_M_contig69 292811..292895 -
1622932103.0810225-CDS-F-serratus_M_contig69:294198..294389	1622932103.0810225-CDS-F-serratus_M_contig69:294198..294389	Fucus serratus male	CDS	F-serratus_M_contig69 294199..294389 -
1690964148.1259234-CDS-F-serratus_M_contig69:294198..294389	1690964148.1259234-CDS-F-serratus_M_contig69:294198..294389	Fucus serratus male	CDS	F-serratus_M_contig69 294199..294389 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig69:291244..294389-
coding sequence from alignment at F-serratus_M_contig69:291244..294389-

protein sequence of mRNA_F-serratus_M_contig69.17971.1

>prot_F-serratus_M_contig69.17971.1 ID=prot_F-serratus_M_contig69.17971.1|Name=mRNA_F-serratus_M_contig69.17971.1|organism=Fucus serratus male|type=polypeptide|length=146bp
FVPESGGFLKLFPNVLRSKSDFVKDSLNGMGDGATVPHAVLLLFFFLLFT
PLWRLLKIRCRRRRMPAHGRRVEGTRNSDNEAIDVRVQSELESALSETRS
KLTSLEHASTRAAAELDDANSRVQGLQAEKVEQEALLRSKVSDLAS

mRNA from alignment at F-serratus_M_contig69:291244..294389-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig69.17971.1 ID=mRNA_F-serratus_M_contig69.17971.1|Name=mRNA_F-serratus_M_contig69.17971.1|organism=Fucus serratus male|type=mRNA|length=3146bp|location=Sequence derived from alignment at F-serratus_M_contig69:291244..294389- (Fucus serratus male)
TTTGTCCCTGAATCTGGGGGATTCCTAAAGTTGTTTCCCAACGTGCTCCG
CTCGAAGAGCGACTTTGTCAAAGATTCCCTGAACGGAATGGGGGATGGCG
CCACTGTACCGCACGCGGTGCTGCTGCTCTTCTTCTTTTTGCTGTTCACG
CCGCTGTGGCGTCTCCTCAAGATCCGTTGTCGCAGGCGAAGGTGAGAGAT
TCCGTAGATTGCAGTAAAAACGTTTAGGCGGCTACTTGTTCTTTATTTTA
CTCAGCAGTACTGGCTTCACGACGGATATTATCCATGATCGTATCGCTAT
TATTATGGAGCTACGTATTAATCAGAGGGCTGGAGGTGATGTATAGTCTA
TATATGTATGTACGCTCATCACATTTAGCAAGAGTAAGGATCAACCAGGT
AAGATTGCCAATCCTGCTCGTGGGCAGCTGAACAGGGAAAATGTTTTTCT
CCCTGTCCGCTTTCGCGTCTGAGCATTTGGCCTCGCGAGACGGGTTCGGC
AGTCCTGTCCCGCGTCAGCCTGCTTATGTCGATACTCAGGCTGAATCTGG
TGCTTACTTACGGAATTCCTCCCGAGTTCCGCGGCGGCGTCCATTTAAAT
AATTATTTAAACCGCCATACGCCGTCGGGTCAGTCCCGAGTTTATCGGGT
CACGCAATTGCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGGTACAG
GGCCAGTAAACCTCAAGGTAGTTCCAAACGGGTGCTGCCTTGGCAGTTCA
CCATGGACCAATTAACATGCGCCTCTCTTTCCCACACCCACTATTGGTAT
GAAGTGGGCATGTTGAAAGTACCGGCTGTGATACCGGACGTGGAAGATAC
AGTATGTAATGTATGTACAGCAGCAGTCGCACCGAAGCTATGGTGATCCG
GTGGTACGGTGGTACTCTATTAATAGTACAATATAATATTTTTACCATAC
AGTACTCGAAACCGCGGTTCATCGTACCCTCGGTGCTACAACAGACAGTG
TCTACAGTATATAAATGTACAGGTACAAGTATACTGTAGCTATTACAGAT
GCAATTATAAGCAGAGATTGAGCATCAATCGGTATGGTTGCCAATCCTGC
TCGTGGTCAGCTGAACAAGAAAAATGTTTTTTCCTTTTTTGTCCCCGTTC
GCGCCTCTGAGAATTTGGTCATGCGAGACAGGTTTGGCCGTCCCGTCCCG
CGCTAGCCCGCTCATTTTCCACACTACATTAGGGCTGAATCAGTATCCTG
GACATGCAATCAATGCAGGGACACATGTCACAATGCAACGTGGTACGGGG
TAGCGCGTAGTTGGGGGGGGGGGGTGCAAAAGATCAAAACCGGAAGCACG
GGCGTGTTTTGTTTTTTGTTTTTTGTTTTTCGGGGAGTGAGGGAGAAAAC
TTTAACTTTACGTACTCTTATCGTTTCATGTTGCCTTATCGCATTCATTT
TCTCGACAATCCCCCTTTATTCCTATTTTCTCCCCATCTTGAAGAATGCC
CGCCCATGGTCGGCGTGTCGAAGGTACTCGTAACAGCGACAACGAGGCCA
TCGATGTCAGGGTGCAGTCAGAGCTGGAGGTAAGTTATTTGGTGGTACGA
ACGAAGTTTGTTCGCTTTCCTCTTGACATTCTTCCCCCTACACTATACTG
TCCGTAATTTATCCTATTAATAGTACTGTAGACTACCAATACAGGAGTAT
TGTATGTGCTCAAAGGCTCTTCTCTTAGCAAGGCTCTTTTTGAAAGCATG
TAGCGGAGGTTATGCTAAACGATCCCCCGCAGAGAATTAGCTCAGGGCTC
CGGTTTGCTTACCCATAGAGTACCTGTTTTGGAAACTAGGAAGCGCTGTC
GGCACTTCTGCGCTTCTCCAACCGATATGTACGTGTAGAACTTTTGCTTG
CATCATTACATCTATTATGATACTTGGTGTTGACAATATCCTTATTTTCA
TCTTTCCCGCGGGACTTCTTTTAACCCCCCCCTGCCTTCCCGCACCGAAG
CAGTGCTGGCTGCTGAAACCTCCCATCCTTCTCTCCCCCCACCCTTCGAC
CCTGTCAAGAAATTCCGTGGACATTTTTGTTTGATCGATTTTCCCACGCT
GTTCCTTTTCCTCCCCATTTCCCCTTTTTTTTGTCTTCCTTCCGTTGACA
CCTAACGATCGCCCCCCCTCGTGGTTGCCCACAGAGTGCACTTTCCGAGA
CCCGGTCGAAGTTGACGTCACTTGAACACGCGTCAACTCGAGCAGCCGCC
GAACTGGACGATGCCAACTCTCGTGTACAAGGCCTGCAGGTGACGAACGA
TCCCGTCTTTTCCCAAAGCGCAGACCCTGGTGCAATATATATATATATAG
TATACATATACCATGAATAATTTAGTTGCCTACGGTACGGTTGATAATAA
GGTGCGGTGGCTGTAACCGGCCGTGGGTGATGCCGTACGGGACAACATGT
TTGGTCTATCCCGAGTTTCCAACGAAGGATTTTTATCTTCATGTTCTACA
GCGATTCCCCCACTGCAACTGTTTTCCTTCTTTTTCTATACAAAACCCTG
CGGAAAAAATCCGGCCGCGTTTAACAGAAAAGACAGGACGGACGGGTTCG
AGGCAGAATATCGAGAGCGAGCGGTAGATACTGATCCAAACGTGGTGTTA
AAATATTACCATATATGTTCTGACTACTAACGCGATGAGTACTATTAATA
GGTACTGCTGTCGCGTTCGTTTATCAGAAAACTGGTGTGTGTGGGTTGTT
TGGTAATCCAACGAATGTTGTCAGAAATATGCCTACTGCTTGTATCCCCA
ATTTATTGATATATTCGGCGGCACCAGTGTGGAAATTTACCATCTTTTGG
GAATATGAAATACCCACGTCTTACGAGATATCAGTATTCTTCTAGATTTT
CGGCGTGTGATACCAAAGCGTCTTTCGCCGTCGCTTCGATACCTTGCCGC
AAAAAAGAGAGAAAATCGATGAGAAGCTTAACTGAACGGCGCCGTCAAAC
TCTCTCAATTCGATCCGATATGTGTGTTGTTCTGTTCATTTTCTTCACCC
GTCCCAAATAAAACACACAAAAACCCGATTCGAGAAGGCTGAAAAAGTGG
AGCAGGAAGCCCTTTTGCGGTCCAAAGTGTCGGACCTGGCCTCTGC

Coding sequence (CDS) from alignment at F-serratus_M_contig69:291244..294389-

>mRNA_F-serratus_M_contig69.17971.1 ID=mRNA_F-serratus_M_contig69.17971.1|Name=mRNA_F-serratus_M_contig69.17971.1|organism=Fucus serratus male|type=CDS|length=876bp|location=Sequence derived from alignment at F-serratus_M_contig69:291244..294389- (Fucus serratus male)
TTTGTCCCTGAATCTGGGGGATTCCTAAAGTTGTTTCCCAACGTGCTCCG
CTCGAAGAGCGACTTTGTCAAAGATTCCCTGAACGGAATGGGGGATGGCG
CCACTGTACCGCACGCGGTGCTGCTGCTCTTCTTCTTTTTGCTGTTCACG
CCGCTGTGGCGTCTCCTCAAGATCCGTTGTCGCAGGCGAAGTTTGTCCCT
GAATCTGGGGGATTCCTAAAGTTGTTTCCCAACGTGCTCCGCTCGAAGAG
CGACTTTGTCAAAGATTCCCTGAACGGAATGGGGGATGGCGCCACTGTAC
CGCACGCGGTGCTGCTGCTCTTCTTCTTTTTGCTGTTCACGCCGCTGTGG
CGTCTCCTCAAGATCCGTTGTCGCAGGCGAAGAATGCCCGCCCATGGTCG
GCGTGTCGAAGGTACTCGTAACAGCGACAACGAGGCCATCGATGTCAGGG
TGCAGTCAGAGCTGGAGAATGCCCGCCCATGGTCGGCGTGTCGAAGGTAC
TCGTAACAGCGACAACGAGGCCATCGATGTCAGGGTGCAGTCAGAGCTGG
AGAGTGCACTTTCCGAGACCCGGTCGAAGTTGACGTCACTTGAACACGCG
TCAACTCGAGCAGCCGCCGAACTGGACGATGCCAACTCTCGTGTACAAGG
CCTGCAGAGTGCACTTTCCGAGACCCGGTCGAAGTTGACGTCACTTGAAC
ACGCGTCAACTCGAGCAGCCGCCGAACTGGACGATGCCAACTCTCGTGTA
CAAGGCCTGCAGGCTGAAAAAGTGGAGCAGGAAGCCCTTTTGCGGTCCAA
AGTGTCGGACCTGGCCTCTGCTGAAAAAGTGGAGCAGGAAGCCCTTTTGC
GGTCCAAAGTGTCGGACCTGGCCTCT