mRNA_F-serratus_M_contig69.17965.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig69.17965.1
Unique NamemRNA_F-serratus_M_contig69.17965.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig69.17965.1 vs. uniprot
Match: D8LGS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS6_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.980e-45
Identity = 92/181 (50.83%), Postives = 114/181 (62.98%), Query Frame = 3 
Query:   39 PSVLSSWWL--PYLNLNDPDWLIFSTVYALGAVVCGWTVLQGL-LEGRRSEAEKNSLSQLRRRYVAMAYGAACLGFAAKIALFTPRNEPPQNA-DNIVLSFLSSEVCREVGGVLILTSAMMQCASIGKPLSGSSK---QTAGGKVVSIAGVVVAAAAIVLGLFLPGYLERTGIVVPAHCGG 560
            P  L +++L   YLNLNDPDW+++ST YALGAVVCGW+ LQ     GR +       +   RR  AMAYGAACLG A   A   PR EP +   D IVL+FLSSEV RE GG  IL  AM  CA + +P   ++     T+G  V+ +  V VA A +VLG++LPGYL+R GI VPAHCGG
Sbjct:    9 PIALGAFFLLASYLNLNDPDWILWSTAYALGAVVCGWSALQAAGAVGRGARGTAKDDASYSRRMTAMAYGAACLGLAGHSAFLAPRGEPLETGNDGIVLTFLSSEVAREAGGAFILAQAMAMCAFVWRPRDATATGAPSTSGRAVIGVVSVAVALAGVVLGVYLPGYLQRAGIAVPAHCGG 189
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig69.17965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGS6_ECTSI1.980e-4550.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig69contigF-serratus_M_contig69:241710..244014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTMEM220 protein
Ec32 orthologEc-07_005180.1
Exons2
Model size1778
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig69.17965.1prot_F-serratus_M_contig69.17965.1Fucus serratus malepolypeptideF-serratus_M_contig69 242464..242808 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932105.9584234-UTR-F-serratus_M_contig69:241709..2419261622932105.9584234-UTR-F-serratus_M_contig69:241709..241926Fucus serratus maleUTRF-serratus_M_contig69 241710..241926 +
1690964149.6903563-UTR-F-serratus_M_contig69:241709..2419261690964149.6903563-UTR-F-serratus_M_contig69:241709..241926Fucus serratus maleUTRF-serratus_M_contig69 241710..241926 +
1622932105.981292-UTR-F-serratus_M_contig69:242453..2424631622932105.981292-UTR-F-serratus_M_contig69:242453..242463Fucus serratus maleUTRF-serratus_M_contig69 242454..242463 +
1690964149.7042806-UTR-F-serratus_M_contig69:242453..2424631690964149.7042806-UTR-F-serratus_M_contig69:242453..242463Fucus serratus maleUTRF-serratus_M_contig69 242454..242463 +
1622932106.0186186-UTR-F-serratus_M_contig69:242808..2440141622932106.0186186-UTR-F-serratus_M_contig69:242808..244014Fucus serratus maleUTRF-serratus_M_contig69 242809..244014 +
1690964149.7280147-UTR-F-serratus_M_contig69:242808..2440141690964149.7280147-UTR-F-serratus_M_contig69:242808..244014Fucus serratus maleUTRF-serratus_M_contig69 242809..244014 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932106.0011396-CDS-F-serratus_M_contig69:242463..2428081622932106.0011396-CDS-F-serratus_M_contig69:242463..242808Fucus serratus maleCDSF-serratus_M_contig69 242464..242808 +
1690964149.7168577-CDS-F-serratus_M_contig69:242463..2428081690964149.7168577-CDS-F-serratus_M_contig69:242463..242808Fucus serratus maleCDSF-serratus_M_contig69 242464..242808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig69.17965.1

>prot_F-serratus_M_contig69.17965.1 ID=prot_F-serratus_M_contig69.17965.1|Name=mRNA_F-serratus_M_contig69.17965.1|organism=Fucus serratus male|type=polypeptide|length=115bp
MAYGAACLGFAAKIALFTPRNEPPQNADNIVLSFLSSEVCREVGGVLILT
SAMMQCASIGKPLSGSSKQTAGGKVVSIAGVVVAAAAIVLGLFLPGYLER
TGIVVPAHCGGEGE*
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mRNA from alignment at F-serratus_M_contig69:241710..244014+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig69.17965.1 ID=mRNA_F-serratus_M_contig69.17965.1|Name=mRNA_F-serratus_M_contig69.17965.1|organism=Fucus serratus male|type=mRNA|length=2305bp|location=Sequence derived from alignment at F-serratus_M_contig69:241710..244014+ (Fucus serratus male)
AAGGATGACCGGGCCATCGGAAATCGCGGCGCCTGCCGCCTTCGGTGCTT
TCTTCGTGGTGGCTTCCTTACCTCAACCTCAACGATCCAGACTGGCTGAT
TTTCTCTACCGTCTACGCGCTCGGGGCGGTTGTCTGCGGCTGGACTGTGT
TGCAGGGGCTGTTGGAGGGCAGGAGAAGCGAGGCGGAGAAAAATTCTCTG
TCACAACTGCGGCGGAGGTGAGGTGGTTTCTGAGGGCGAACATGAGTCGC
GACACCGTGTCAAAAACGTTGTTTTAGGTTGCCAGAAGATTGTTATCTTT
CCTAGCTGTACCTAAGGACGTTCTGTTTTGATTTCGTGAGAAATTTCGGC
CACGAGGTCGGGGTCTCTTTTGAAGTTACCCCGAAGCGTCGAAAGTCAGC
AAAGCGGCATGGCGGCGGCCAGAGGTTTTTTCGCCAACTCTGTGGACCGG
GTCTCATTCGAGCGGTTGGTACCTGCAGAGGGCCAAGTCACTCAAGCCTT
GGAGTTGCCAAATTGTCAAATTCTCGATACGGTTGTCTAAACGGTAGAGG
TAGTGTTGTCGAAGGCCTGAACTACAGAGTACCGCTTGCTGTACAGGTAA
CGCCAGCTGTACAGCTCGATCCAAAACACGAAAAGCTGAAAAGAACGTTC
GGGTCGACGCACGTTCTCATCCAAAAAAAATCCCTACTAGCGCCTAACCG
CAGGTAGCAATATATGCCGTTTGGTTTTCGCGTGCCGACCGCAGGTACGT
AGCTATGGCGTACGGCGCCGCCTGCCTTGGGTTCGCGGCAAAAATTGCCC
TCTTCACCCCAAGGAACGAGCCCCCCCAGAATGCAGATAACATTGTTTTG
TCTTTCCTCAGCAGCGAAGTTTGTCGCGAAGTAGGAGGGGTCCTCATCTT
GACGTCCGCCATGATGCAATGCGCCTCCATTGGAAAACCGTTGAGCGGAT
CGTCCAAACAAACCGCGGGTGGGAAGGTCGTTTCAATCGCGGGCGTCGTG
GTCGCGGCCGCGGCGATCGTCCTTGGACTATTCCTCCCGGGATACCTGGA
GCGCACGGGCATCGTGGTGCCCGCCCACTGCGGCGGAGAGGGCGAATAAT
GATCGAATGATGATCGCGATATCGGGTCAAGTACCCCCCCGGATATAGGA
TGTACAGGCCTCAAGCCTCGGATGCGTACCAGGTACCAAGATTTTTTTTT
CTGTCGGTGAAATTAATGTTTCTCGTGTTTTTTTTTCAATATGTCTTGTG
TAGTTTTGTTTATGTTTTTTCGAACATCGTTTCGCTCACAAAAAGTACTG
CTGTCACACCTGTTATTATGCTAGCTTAGAGCTTAGGGCTTGGTGCGGAC
GGGCGGGAGTGGGGTGATTTCGACCACCGTCGTGCACAAAAAGCTGCTCG
CCCCCGTAATGCCGGGGAGGCAAGCGGCCGTCGCCATATACAAGAGAAGG
GTTTGCATCGTGTTCGTAACGTTTGTCTTGTGTGGAAACGCCTGTCCCTT
TTTTTTGTGATATTGGTATGAGGGCCTCGAGGTGTGTACTCCCGAGGGGC
AGACCGCGCGCGCGCCAGGTGGGGAACACCGCGCCAAGCCCCAAGGTTAA
GGTTACTGGCATGACTACCTGTGTCTGTGGATGTGATTTGTGTGTGTAAC
AATGCTGTTAAAAGTAGTCCCGCCTTTTTGGTGCGCAGCCCTCTGTCATG
GTACACACACTAAACTGTAGTATAGTATAGTATAGATTCTCCTGTGGTAG
GGTGTTGTGTGTGTTTTCTTCCCATCCATTCTGGACATCAAGTTCGTTGG
ACGTACCAGCCGGGGTCACACAGGAGGAAGGTCACACAGGATTTTTCATC
CACCTTCCTTCTGCGGTGCGTGCCTTGATTTTTGTCGCGAGAAGGATTCA
GCCATTCCTTTCCCTCGTCGACCGTGAAGTCGATGTAGTATGAATATTTC
AGAGCCGAAGTGTAGAGTGGGTTTTCGCTGCAGCGTCATTTCACAAAAAA
AATAAATGATTGTGGTGTCCTGTAGGTATATTCTTGAACAAACATAACCA
AGTACTGTATATAACCCTGTACTGTAGTAAGTAACTCGATGTATTTGTCG
TCCGTGATGCTATAATCAGACCTACTCGTATTAATAGTATCCTTTCACAG
ACAGGTTCGTTTATCCTCTCGGAGGAAAACTTGAGGGCGGGAAAAGCACT
GCACTCTAGTCCCTCCGTCGCAGATGCGGCACCTTTCGTAGAGCACCTCC
CCATACCCCCTCCGATCTACCCACCCACACCCACACACCCATCCCTTCAT
TGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig69:241710..244014+

>mRNA_F-serratus_M_contig69.17965.1 ID=mRNA_F-serratus_M_contig69.17965.1|Name=mRNA_F-serratus_M_contig69.17965.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig69:241710..244014+ (Fucus serratus male)
ATGGCGTACGGCGCCGCCTGCCTTGGGTTCGCGGCAAAAATTGCCCTCTT
CACCCCAAGGAACGAGCCCCCCCAGAATGCAGATAACATTGTTTTGTCTT
TCCTCAGCAGCGAAGTTTGTCGCGAAGTAGGAGGGGTCCTCATCTTGACG
TCCGCCATGATGCAATGCGCCTCCATTGGAAAACCGTTGAGCGGATCGTC
CAAACAAACCGCGGGTGGGAAGGTCGTTTCAATCGCGGGCGTCGTGGTCG
CGGCCGCGGCGATCGTCCTTGGACTATTCCTCCCGGGATACCTGGAGCGC
ACGGGCATCGTGGTGCCCGCCCACTGCGGCGGAGAGGGCGAATAAATGGC
GTACGGCGCCGCCTGCCTTGGGTTCGCGGCAAAAATTGCCCTCTTCACCC
CAAGGAACGAGCCCCCCCAGAATGCAGATAACATTGTTTTGTCTTTCCTC
AGCAGCGAAGTTTGTCGCGAAGTAGGAGGGGTCCTCATCTTGACGTCCGC
CATGATGCAATGCGCCTCCATTGGAAAACCGTTGAGCGGATCGTCCAAAC
AAACCGCGGGTGGGAAGGTCGTTTCAATCGCGGGCGTCGTGGTCGCGGCC
GCGGCGATCGTCCTTGGACTATTCCTCCCGGGATACCTGGAGCGCACGGG
CATCGTGGTGCCCGCCCACTGCGGCGGAGAGGGCGAATAA
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