mRNA_F-serratus_M_contig69.17962.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig69.17962.1 vs. uniprot
Match: D8LGT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT4_ECTSI) HSP 1 Score: 783 bits (2022), Expect = 2.220e-256 Identity = 622/1460 (42.60%), Postives = 744/1460 (50.96%), Query Frame = 1
Query: 1 SVAISDAIITAQAAFAGGEFQPEAFSRCVCSLMEAFEGGDNAVRLCAARLMERYRPYLGSNIIALEMAQRVSRLLG-NEDPTTRELCLDVLAALAFAVGGLPRSFLHVVDRSLRSPFLAERLAAARVYASSISVQRLLSSASDDSVSTEPSPLAIRTPKDLSAVCTALLPTLYGGDDPFRLSRESGLEATSGRGTVYSTTSGGSADVEGLLEAVLSKVDADLPSTEAWESLKHFLLEEDRTTDAAASTSMVCGKRLAA-ADAILLRLRISARSGWAGGRK-------GRALPLLRVIAVDFIVSLVRLEATPLVLHGEEEEPAA---------------------------------STSGWSAFGNTSLSAAASA-----GVESVWRLLDALAKPTVDVDETAELLSVLGAPALADAVLDAEFAELSRRHRPLSSSSRSPLSARVLNACASGLVSFAAAAFRRCSSYREDGSGSSGDAR-GKALSMLARHAADCVLRSPPALRLLSGEDLHGNGGRIDGEESSVRIIFPQLRALATVHSWPRQRLSLSIARRLGSLPPSSPLAVDLAVLESHIVGAGFEGNGGGHGEVDAAGSSRGATVNTVEGLLLDLLIARRFTE-NPKAAVGIVVALMRLHRSSLHRQTALSTALSGAMGLQDGE----------------------------------GRETN-----DQTGQPPLVRDPWFQLVLCRECMLHGFYGAAESGLRRLR------GGGARFETSDLVTVWTEVLAKISTAEAYYARTPDQASDHDSTVAAHSCAHHVTLQAAELLGSLPRS-ATSLGRGLARDRF--------ACGGGDIGGNASGVFRCDR--DEFSFQRSFLEARAELLQLLGASWGMCQDLSAARNSRYARYTRREGRCRRLPAAYRRLARDFRFLRGTRPGAGPTTSEPLRAAACLCLLLAVSADALLSQGKSAFAAPREIKGAGKKKSWRAWLERVASGGSDCGDXXXXXXXXXXXXXXXXXEGALMKAVRVLASRLVDLGNAPSASIGRAAFTSILESVRSVPFPMPRAFFRTGGGPRVALSILPPPPAA-------LSQDLAETASNVWAAGQPPPAERDRATSPAXXXXXXXXXXXXXXXXX--------DTSLKRARRDGGASARYYGPSCGLRADIAAGGRWRRAPLPLMAPVPGAGSSVAGTG----EKQRAAADSVTPFCFPAAETWWAQVAREEALF----------------GGGGSGGNG-WRSHARAQTSISGVWLLQGSVCRGKGAGGALPPVSEVILDVSAPIP--AAADGFGDTEISGAQPVAHPSEQATKMWTKKVIAQTFGAPADAAMALCFRARIAMP----PLRSTHPR-------------------------VEVTVSLKRRSG---GERVGGTGVVALGNDGACGGRRGLGGGGGDEEPEVWTIGSVTISL 3855
SVA+SDAI+ AQ+ F GGEFQPEAF RCVC L+EAFEGGDNA++L AARL+ER RPY G N++A+E+AQRVS++LG ++DPTTRELCLDVL+A+ F GGLPR L + RSLRSPFLA V DLPSTE WESLK FLL+ED + + A D +L RLR + G + P LR +AVDF VSL+ +EA AA AA A G SVWRLLDA++ + E AELLSVLGAPA+A AVL+AE ++ ++S+ S S+ +L ACAS LVS++ AAFR Y DG S AR KAL+ LA AAD VL S P LRLLS + G G + R++ PQLRALA VH+WPRQR++L++AR L +PP+S LAV+LAVL SH+V AG EG+ G G + +E +L +LL RRF + NPKAAVGI VALMR HR SL RQ+ LS+AL GAMG G E + G P+V DPWFQLVLCRECMLHGF+ AA +GLRRLR GGGA SD V WTEVL K+S AEA++ +PD VAAH+CA H T AAELL S+PR A G G A G G GG A GVFR D F+FQR FL ARAELL+LLGA WGMCQDLSA R +RYAR +RRE RC ARDFR LRG PGAG TTSEPLRAA+CLCL LA++ADALLSQGKS F RE KG+ KKK+WR WLER+ + G++ EGAL+KAVR+L SRL+ L + P ASIGR AF+SILESVR PFP+PRAFFRTG PRVALS LPP PAA ++ D T S W GQP XXXXXXXXXXXXXXXXX KR RRDGGA ARYYGPSC LRAD+A R RR LPL++ P A S+ AG+ R G G G G WRSHA QT +GVWLLQG+VCRG+G GG LP VSEV+L +S +P A A G G + AT+ W+K+V+A+ FGAPAD++ LCFRA++ +P P T +EVTV L+ R ER TG VALG+ G GGGG+ E EVWT+G V + L
Sbjct: 10 SVAVSDAILAAQSTFEGGEFQPEAFPRCVCLLLEAFEGGDNAIKLSAARLLERCRPYFGGNVLAVEVAQRVSQVLGYHDDPTTRELCLDVLSAVTFGTGGLPRGILLDIGRSLRSPFLA--------------------------------------------------------------------------------------------------VSGDLPSTELWESLKVFLLDEDTSXXXXXXXXXETQLNVTALVDLVLHRLRSNXXXXXXXXXXXXXXXXPGASNPALRAMAVDFFVSLIHVEAVERSKFAMAAAEAAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAPRATPPTPGRSSVWRLLDAVSAASEAHGEKAELLSVLGAPAVAVAVLEAEAVAGAKSAGKMASTLSS--SSVLLLACASSLVSYSGAAFRETPFYPADGGISDSAARRDKALAALAEFAADGVLSSLPVLRLLSSRGISGGG---PAAAAGARLLLPQLRALAAVHAWPRQRVALAVARSLRRVPPTSALAVELAVLVSHVVRAG-EGDDKGSXXXXXXXXXXGERLGDLERVLWELLFGRRFCDDNPKAAVGIAVALMRHHRGSLSRQSTLSSALVGAMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGAEAGKRCPAEPEGTDPIVLDPWFQLVLCRECMLHGFFEAAGAGLRRLRDGGRRKGGGAVLPASDTVWAWTEVLGKVSAAEAFFGGSPDP-------VAAHACAAHETALAAELLASIPRRPAGPWGNGRRSPSVQPQSVPAAAAGQGGEGGVA-GVFRGGGGGDLFAFQRGFLLARAELLRLLGACWGMCQDLSATRTNRYARNSRREARCXXXXXXXXXXARDFRLLRGFAPGAGSTTSEPLRAASCLCLFLAIAADALLSQGKSVFVGSRE-KGSNKKKTWRGWLERLVAAGAE--------EEEEDRVGGGETEGALLKAVRLLGSRLLGLSDPPKASIGRVAFSSILESVRGTPFPIPRAFFRTGVSPRVALSALPPAPAASLTGPDGVAAD--GTGSAPWG-GQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSVGEKRQRRDGGAGARYYGPSCRLRADVAEAERSRRPRLPLISAAP-AVSTAAGSSPPLSHSSRCPNSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPSGQAGVGAGGIWRSHAVGQTGGAGVWLLQGTVCRGRGTGGVLPAVSEVVLKISVELPPAAVASGGGADSLRSQGDPKRGISAATRKWSKEVVAEMFGAPADSSTVLCFRAQVHLPAFSPPSLPTARNGXXXXXXXXXXXXXXXXXSAGVGGVMEVTVCLRSRGKQQHDERANDTGFVALGSSSRGGADAHGSGGGGNGEKEVWTVGKVAVPL 1344
BLAST of mRNA_F-serratus_M_contig69.17962.1 vs. uniprot
Match: A0A6H5KB40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB40_9PHAE) HSP 1 Score: 749 bits (1933), Expect = 1.670e-242 Identity = 628/1502 (41.81%), Postives = 760/1502 (50.60%), Query Frame = 1
Query: 64 PEAFSRCVCSLMEAFEGGDNAVRLCAARLMERYRPYLGSNIIALEMAQRVSRLLG-NEDPTTRELCLDVLAALAFAVGGLPRSFLHVVDRSLRSPFLAERLAAARVYASSISVQR---------LLSSASDDSVSTEPSPLAIRTPKDLSAVCTALLPTLY--GGDDPFRLSRESGLEATSGRGTVYSTTSGG--SADVEGLLEAVLSKVDADLPSTEAWESLKHFLLEEDRTTDAAASTSMVCGKRLAAADAILLRLRISARSGWAGGRKGRALPLLRVIAVDFIVSLVRLEATPLVLHGEEEEPAA---------------------------STSGWSAFGNTSLSAAASA---GVESVWRLLDALAKPTVDVDETAELLSVLGAPALADAVLDAEFAELSRRHRPLSSSS----------------------------------RSPLSARVLNA-------------------------------CASGLVSFAAAAFRRCSSYREDGSGSSGDARG-KALSMLARHAADCVLRSPPALRLLSGEDLHGNGGRIDGEESSVRIIFPQLRALATVHSWPRQRLSLSIARRLGSLPPSSPLAVDLAVLESHIVGAGFEGNGGGHGEVDAAGSSRGATVNTVEGLLLDLLIARRFTENPKAAVGIVVALMRLHRSSLHRQTALSTALSGAMGLQD--------------------GEG----------------RETNDQTGQPPLVRDPWFQLVLCRECMLHGFYGAAESGLRRLR------GGGARFETSDLVTVWTEVLAKISTAEAYYARTPDQASDHDSTVAAHSCAHHVTLQAAELLGSLPRSA-----TSLGRGLARDRF--ACGGGDIG-GNASGVFRCDR---DEFSFQRSFLEARAELLQLLGASWGMCQ----------------------DLSAARNSRYARYTRREGRCRRLPAAYRRLARDFRFLRGTRPGAGPTTSEPLRAAACLCLLLAVSADALLSQGKSAFAAPREIKGAGKKKSWRAWLERVASGGSDCGDXXXXXXXXXXXXXXXXXEGALMKAVRVLASRLVDLGNAPSASIGRAAFTSILESVRSVPFPMPRAFFRTGGGPRVALSILPPPPAAL---SQDLAE--TASNVWAAGQPPPAERDRATSPAXXXXXXXXXXXXXXXXX-------DTSLKRARRDGGASARYYGPSCGLRADIAAGGRWRRAPLPLMAPVPGAGSSVAGTGEKQRAAADSV---------TPFC--FPAAETWWAQVAREEALF---------GGGGSGGNG-WRSHARAQTSISGVWLLQGSVCRGKGAGGALPPVSEVILDVSAPIPAAA---DGFGDTEISGAQPVAHPSEQATKMWTKKVIAQTFGAPADAAMALCFRARI--------AMPPLRSTHPR------VEVTVSLKRRSG---GERVGGTGVVALGNDGACGGRRGLGGGGGDEEPEVWTIGSVTISL 3855
PEAF RCVC L+EAFEGGDNA++L AARL+ER RPY G NI+A+E+AQRVS++LG ++DPTTRELCLDVL+A+ F GGLPR L + RSLRSPFLAER AAAR YAS + R L RT +++SA+ +ALLP L GGD +R SG RG GG DVE LLEAVL KV SA A LR +AVDF VSL+ +EA AA TSG ++ + A+ G SVWRLLDA + + E AELLSVLGAPALA AVL+AE ++ ++++ R PL+ + A CAS LVS++ AAFR Y DG S AR KAL+ LA AA+ VL S P LRLLS + G G + R++ PQLRALA VH+WPRQR++L++AR L +PP+S LAV+LAVL SH+V AG + GG GE G + L DL KAAVGI VALMR HR SL RQ+ LS+AL GAMG GEG R + G P+V D W+QLVLCRECMLHGF+ AA +GLRRLR GGGA SD V WTEVL K+S AEA++ +PD VAAH+CA H T AAELL S+PR + TS A+ + A G G G +GVFR D F+FQR FL ARAELL+LLGA WGMCQ + R A +RRE RCRRLPAA+ LARDFR LRG PGAG TTSEPLRAA+CLCL LA++ADALLSQGKS F RE K KKK+WR WLER+ + G+ EGAL+KAVR+L SRL+ L + P ASIGR AF+SILESVR PFP+PRAFFRTG PRVALS LPP PAA D+A T S W GQP XXXXXXXXXXXXXXXXX KR RRDGGA ARYYGPSC LRAD+A R RR LPL++ P A S+ AG+ + P C F A+E WWAQ+ REE + G G G +G WR+HA QT +G+WLLQG+VCRG+G GG LP VSEV+L +S +P AA G D+ + P S AT+ W+K+V+A+ FGAPAD++ ALCFRA++ ++P R+ +EV V L+ R ER TG VALG+ G GGG + E EVW +G V + L
Sbjct: 3 PEAFPRCVCLLLEAFEGGDNAIKLSAARLLERCRPYFGGNILAVEVAQRVSQVLGYHDDPTTRELCLDVLSAVTFGTGGLPRGILLDIGRSLRSPFLAERRAAARAYASCMCAHRSXXXXXXXXXXXXXXXXXXXXXXPALTPRTLEEMSALSSALLPLLSCEGGD-----ARVSGW-----RGGGGGREGGGFFPRDVEELLEAVLWKV--------------------------------------------------SAAPAPAAXXXXXXXXALRAMAVDFFVSLIHMEAVERSKFAMAAAEAAVKXXXXXXXXXXXXXXXXXXXXXXXXXXTSGGASASTAKAAPRATPPTPGRSSVWRLLDAFSVASEAHGEKAELLSVLGAPALAVAVLEAEAVAGAKSAGKMAAAHGFGDAAGGGXXXXXXXXXXXXGRVGEEAHALARIRFPLATAAVEAFRRLCTSPXXXXXXXXXXXXXXXXXXXXXXACASSLVSYSVAAFRETPFYPADGGVSDSAARREKALAALAEFAAEGVLSSLPVLRLLSSRGIGGGGPA--AVAAGARLLLPQLRALAAVHAWPRQRVALAVARSLRRVPPTSALAVELAVLVSHVVRAGEVDDKGGGGEGAGTGGEK----------LGDL---------EKAAVGIAVALMRHHRGSLSRQSTLSSALVGAMGXXXXXXXXXXXXXXXXXXXXXXGGEGDPGTAGVGCGGAEAGKRCPAEPEGTDPIVLDTWYQLVLCRECMLHGFFEAAGAGLRRLREGGRRKGGGAVLPASDTVWAWTEVLGKVSAAEAFFGGSPDP-------VAAHACAAHETALAAELLASIPRRSAGPWGTSRRSPSAQPQSVAAAAAGHRGEGGVAGVFRGGGGGGDLFAFQRGFLLARAELLRLLGACWGMCQVTTTMGVCLFWEAFRSQGGFGGSVKELATQRIANASRREARCRRLPAAFXXLARDFRLLRGFAPGAGSTTSEPLRAASCLCLFLAIAADALLSQGKSVFVGSRE-KANNKKKTWRGWLERLVAAGAQ--------EEEEDRVGGGETEGALLKAVRLLGSRLLGLSDPPKASIGRVAFSSILESVRGTPFPIPRAFFRTGVSPRVALSALPPAPAAGLTGPDDVAADGTGSAPWG-GQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSVGEKRQRRDGGAGARYYGPSCRLRADVAEAERSRRPRLPLISAAP-AVSTAAGSSPPLSYSXXXXXXXXXXPRRNPSCLSFSASEAWWAQLVREEVMLAAAAPAAPSGQAGFGASGIWRAHAVGQTGGAGMWLLQGTVCRGRGTGGVLPAVSEVVLKISVELPPAAVASGGAADSLRAQGDPKREIS-MATRKWSKEVVAELFGAPADSSTALCFRAQVHLPACSPPSLPAARNGXXXXXXXGVMEVAVCLRSRGKQQPDERANDTGFVALGSSSRGGADAHRSGGGENGEKEVWAVGKVAVPL 1404 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig69.17962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig69.17962.1 >prot_F-serratus_M_contig69.17962.1 ID=prot_F-serratus_M_contig69.17962.1|Name=mRNA_F-serratus_M_contig69.17962.1|organism=Fucus serratus male|type=polypeptide|length=1255bp MEAFEGGDNAVRLCAARLMERYRPYLGSNIIALEMAQRVSRLLGNEDPTTback to top mRNA from alignment at F-serratus_M_contig69:129800..139452- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig69.17962.1 ID=mRNA_F-serratus_M_contig69.17962.1|Name=mRNA_F-serratus_M_contig69.17962.1|organism=Fucus serratus male|type=mRNA|length=9653bp|location=Sequence derived from alignment at F-serratus_M_contig69:129800..139452- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig69:129800..139452- >mRNA_F-serratus_M_contig69.17962.1 ID=mRNA_F-serratus_M_contig69.17962.1|Name=mRNA_F-serratus_M_contig69.17962.1|organism=Fucus serratus male|type=CDS|length=7530bp|location=Sequence derived from alignment at F-serratus_M_contig69:129800..139452- (Fucus serratus male)back to top |