mRNA_F-serratus_M_contig69.17957.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig69.17957.1 vs. uniprot
Match: D8LGS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS7_ECTSI) HSP 1 Score: 412 bits (1060), Expect = 3.550e-115 Identity = 360/1008 (35.71%), Postives = 482/1008 (47.82%), Query Frame = 2
Query: 1016 YSRRR-MPSNIRISQQLCVKSGNGWEEYCAASSACLITGTTSQT-----DQTLSDGENAARRISVLREMLQVRTGTGGFATMRSLVRVFAERYPRSIWMTFRQLMRQPKAQRCRRDMTVCAMLLSDIDNPFFRHTTAGWPLARLVDLVTDSYLVESPPLSVIYEEGETAPWVTGNE------IRHPATGASGVDCTGLDTSHTVRVGGASGGEHHETGNRASNGTNGARVTFGKVRH------------------------------EKKWTTGVYVILRGSVNLYILDRETTVGQPTMASQEYLTTRASRGQPMHKPCPPADKEAPALTAVVSQGSKRFTRGGNHEDGWVSDGDIYEKFDPIFS-RGVGPPRGRNRTFARRWKACRLGPGALFGDRPQCAVGGDLIDACRGHAGDVSQPYIISACHAGSTGPDLDAGLSRCSPAQETAVTAETTELLEIGLETYREMLAVGMGERTKEDVAVLRATRALEGIPTPTLERICRYATDRIVGTTASSCKCSSILKPGIEA-----------------RNDLVQCDSGRRLVCWKGTFQTTSFFIAEGVGEVVLSNPPSSPSGGSVDSFFRGNXXXXXXXWRQRRNSVGKCRESSSEKKGKTFFIFPTVHAAPSTALTDPQTARADDSACSAFEETESPVATISRSVSLSPLGHKDCGSGNGDECWLGAEEEKPKVLAAILERGDFFGVYPTTTS----RSDQWQTYPSSNATIGGNDKGLVQDTSARLSVRGNESTSSSPKSTATEAAGVDTGVLPTAKPSRSK---RFRWLP-VEATTDPPILVAALPFELPSQEFPALHKASLLAGQGGVRCLAVRLTVLQNIFPSVHRRLAAAAAERYSEWIGEAVRRDEELWIERLVRGSVPSLSRSFYRSFAKADYSGNHATVS-NDLASS---IAESTNGKGESFCSGSEQSTGAE----TIVSA-FPIPPSRPFSSK---KRSIFDLSQRFRRLVSCSTARGVIPVRLGRAL 3799
Y+RRR + I+ +++ ++ W+ A C + + D LS E AARRISVL+++L++R G G A M++LV AERYPRS+W FRQLMRQP+A+R RRDM VCA+LL +IDN FF++TTAGWP +RLVDL +DS LV+ P LSV+YEEGETAP +E + P+ + T ++ RV ASG +E E++WT G YVI+RGSVNLYIL+R PT ASQ+ L T+ASRGQPM++P PPA+ EA + +G RG G E + + S RG P R R R A RWKACRLG GALFGDRP+ +SQP ++ G+ PA ETAVTAE TELLEIG+ TYR +LA G+ E+ VAVLRAT A++G+PT L RICRY T+R G ++ +L P + R + D ++C KGTF+ T FF+ EG GEV+L + G D XXXXXXX + S F+E ++ +I S +L+ W G + P L G P TT+ RSD T S A I + + +T+ + V +S+P AA T +P ++ + R P + ATTDP + +P+ FP LHKASL+AG GG+RCL V L VLQ + P V+RRLA +ERY EW+ EA R++EE W E L SV SLSRSFY SFAK + SG+ A N + SS I+ + G+G S G G++ TI +A + S S +SIF+LS+R+ L CS+AR V+PVRLGR +
Sbjct: 463 YARRRGLDGKIKSMEEVVEQAVRKWKNLGKA--LCRLLRMSDYWYGFAFDGALSGEERAARRISVLQQILEMR-GVGRTA-MKTLVLAIAERYPRSVWSRFRQLMRQPRAERKRRDMAVCAVLLGEIDNQFFKYTTAGWPFSRLVDLASDSRLVQKPALSVLYEEGETAPRTIDSETTVTQAVLVPSVVSIATKTTDSNSDDDPRV--ASGSSCNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERWTVGAYVIVRGSVNLYILERGPAAMLPTPASQDDLATKASRGQPMYRPRPPAEWEAADVAVEAQEGQPGVGRGAGLV-GRRQRRAFTEHLEAVMSGRGAEPRRARTRNMAPRWKACRLGAGALFGDRPEAGSNPTTTTG-------LSQPPGVATEPPGA------------GPALETAVTAEETELLEIGVTTYRRLLAAGVREQEGRAVAVLRATGAMDGVPTQALARICRYGTERSTGPQLAN---PPLLNPSLGRVFPGREQGKAESAFGFPRGEDNGNDYNDSVMCRKGTFRGTVFFVMEGHGEVILGGGETQRFDGRRDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXST--SGFQEDDT---SIGESSALT---------------WTGMSWQGPPDLPGSTATAG--GTTPATTAAAHGRSDITGT--GSTAAI---EPSVASNTTVQAMV-----VASAP------AAAASTPRVPDGSGTKHRDGSSVRLRPGLVATTDPSAITRDPASAVPAPVFPGLHKASLVAGPGGLRCLTVGLAVLQKVCPPVYRRLARVVSERYLEWVTEARRKNEEDWQESLESESVHSLSRSFYDSFAKGNCSGSIAGKGPNGVESSVGWISSAEGGRGSSSVLGFGDRAGSDGDELTIEAATLGMASSNSISGSGKSNKSIFELSRRYVGLALCSSARNVVPVRLGRVV 1403
BLAST of mRNA_F-serratus_M_contig69.17957.1 vs. uniprot
Match: A0A6H5KB88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB88_9PHAE) HSP 1 Score: 313 bits (801), Expect = 8.940e-84 Identity = 320/1037 (30.86%), Postives = 431/1037 (41.56%), Query Frame = 2
Query: 1241 MRSLVRVFAERYPRSIWMTFRQLMRQPKAQRCRRDMTVCAMLLS---------------------DIDNPFFRHTTAGWPLARLVDLVTDSYLVESPPLSVIYEEGETAPWVTGNE------IRHPATGASGVDCTGLDTSHTVRVGGASGGEHHETGNRASNGTNGARVTFG-------------------------------------KVRHEKKWTTGVYVILRGSVNLYILDRETTVGQPTMASQEYLTTRASRGQPMHKPCPPADKEAPALTAVVSQGSKRFTRGGNHEDGWVSDGDIYEKFDPIFSRGVGPPRGRNRTFARRWKACRLGPGALFGDRPQCAVGGDLIDACRGHAGDVSQPYIISACHAGSTGPDLDAGLSRCSPAQETAVTAETTELLEIGLETYREMLAVGMGERTKEDVAVLRATRALEGIPTPTLERICRYATDRIVGTTASSCKCSSILKPGIEARNDLVQ----------CDSGR----RLVCWKGTFQTTSFFIAEGVGEVVLSN--------------------------------PPSSPSGGSVDSFFRGNXXXXXXXWR-----------------QRRNSVGKCRESSSEKKGKTFFIFPTVHAAPSTALTDPQTARADDSACSAFEETESPVATISRSVSLSPLGHKDCGSGNGDECWLGAEEEKPKVLAAILERGDFFGV-----YPTTTSRSDQWQ---TYPSSNATIGGNDKGLVQDTSARLSVRGNESTSSSPKSTATE------------AAGVDTGVLPTAKPSRSK---RFRWLP-VEATTDPPILVAALPFELPSQEFPALHKASLLAGQGGVRCLAVRLTVLQNIFPSVHRRLAAAAAERYSEWIGEAVRRDEELWIERLVRGSVPSLSRSFYRSFAKADYSGNHATV-SNDLASSI---AESTNGKGESFCSGSEQSTGAE----TIVSA-FPIPPSRPFSSK---KRSIFDLSQRFRRLVSCSTARGVIPVRLGRALPHPRNRNQFKAVPPSGVDDHR 3862
M++LV AERYPRS+W FRQLMRQP+ +R RRDM VCA+LL+ +IDN FF++TTAGWP +RLVDL +DS LV+ P LSV+YEEGETAP +E + P+ + ++ RV ASG ET + + G +RV G + E++WT G YVI+RGSVNLYIL+R WKACRLG GALFGDRP+ VSQP P+ PA ETAVTAE TELLEIG+ TYR +LA G+ ER VAVLRAT A G+PT L RICRYAT+R G I + ++ + D+G ++C +GTF+ T FF+ EG GEVVL P + + G G+XXXXXXX ++ ++ G + +S + V A + A + + + + +S +T L P H G +G+ + + A +R D G + ++ S WQ P S AT GG R + G T++ S A+ AA T +P ++ + R P + + TDP + +P+ FP+LHKASL+AG GG+RCL VRL VLQ + P V+ RLA +ERYSEW+ EA R++EE W E L SV SLSRSFY SFAK D SG+ A +ND+ SS+ + + G+G + GS G++ TI +A + S S+ +SIF+LS+R+ L CS+AR V+PVRLGR L P RN P S HR
Sbjct: 1 MKTLVLAIAERYPRSVWSRFRQLMRQPRDERKRRDMAVCAVLLAVRFLTRNTMITRGSYRLCTEEEIDNQFFKYTTAGWPFSRLVDLASDSRLVQKPALSVLYEEGETAPRTIDSETTVTQAVLVPSVVSIATKIIDSNSDDDPRV--ASGSSCDETTSCSEGGK--SRVAAGLSSXXXXXXXXXXXXXXXGWGGVQGTGPPRQQPXXXXXEQQEERWTVGAYVIVRGSVNLYILER-------------------------------------------------------------------------------------------WKACRLGAGALFGDRPEAGSNPTTTTG-------VSQP------------PEAATEPPGAGPALETAVTAEETELLEIGVNTYRRLLAAGVREREGRAVAVLRATGATNGVPTQALARICRYATERSAGPQLXXXXXXXXXXGHIFSGHEQGKDESAFGFPRGIDNGNDYNDSIMCRQGTFRGTVFFVMEGHGEVVLGGGETQIFDGRHEEGXXXXXXXLLAATAFGNRRAPKNRRTRGRHQDTHVGSXXXXXXXXXXXXXXXXXXXXXXXXXGRQESTSGFQEDDTSVGESSVLTWTGMVSGAGTPAAAAVAAMKPEQETAATAVDADSAASTDGYPQGLIPNEHHGKGRDSGESTPIPSAAALSISFAEEQDRADGDGGSSGEGWGPRSAVSAGWQGPPDLPGSTATAGGTTPATTAAAHGRSDITGTGITAALESSVASNTTAQAMAVAAAPAAAASTPRVPDGSGTKHRDGSSVRLRPGLVSITDPSAITTDPASAVPAPVFPSLHKASLVAGPGGLRCLTVRLAVLQKVCPPVYHRLARVVSERYSEWMTEARRKNEEDWQESLESESVHSLSRSFYDSFAKVDCSGSVAGKGANDVESSVGWTSSAEGGRGSNSVLGSGDRAGSDGDEGTIEAATLGMASSNSISASGKSNKSIFELSRRYVGLALCSSARNVVPVRLGRVLV-PAQRN----TPSSSTSPHR 918
BLAST of mRNA_F-serratus_M_contig69.17957.1 vs. uniprot
Match: A0A6H5KDQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ5_9PHAE) HSP 1 Score: 103 bits (258), Expect = 2.630e-19 Identity = 60/129 (46.51%), Postives = 70/129 (54.26%), Query Frame = 3
Query: 12 LRGLAAYVLQGISLQLPQPDQKGRVDMAKALLHFDPGPPPPRFEFNRV---RTNPQ--TVGWQSEEQGYSSNNVRNVVWKGLRQFGRRPVLLAVARDEPSTMIVRGWDSSMAWRITNVITFHEMDWKLW 383
L GLAAY++Q ISLQ+PQPD+KGRVDM+KA L F PGPPPPRFEF R NP + + VVW+G+R RR VLLA AR+ ITFHE DWK W
Sbjct: 108 LSGLAAYLVQSISLQIPQPDRKGRVDMSKASLQFSPGPPPPRFEFGPSQFDRRNPSDGSEAGDTLRPPVGGRTASRVVWRGIRTLRRRAVLLACARN---------------------ITFHEDDWKTW 215 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig69.17957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig69.17957.1 >prot_F-serratus_M_contig69.17957.1 ID=prot_F-serratus_M_contig69.17957.1|Name=mRNA_F-serratus_M_contig69.17957.1|organism=Fucus serratus male|type=polypeptide|length=1197bp MPSNIRISQQLCVKSGNGWEEYCAASSACLITGTTSQTDQTLSDGENAARback to top mRNA from alignment at F-serratus_M_contig69:22945..57671+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig69.17957.1 ID=mRNA_F-serratus_M_contig69.17957.1|Name=mRNA_F-serratus_M_contig69.17957.1|organism=Fucus serratus male|type=mRNA|length=34727bp|location=Sequence derived from alignment at F-serratus_M_contig69:22945..57671+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig69:22945..57671+ >mRNA_F-serratus_M_contig69.17957.1 ID=mRNA_F-serratus_M_contig69.17957.1|Name=mRNA_F-serratus_M_contig69.17957.1|organism=Fucus serratus male|type=CDS|length=7182bp|location=Sequence derived from alignment at F-serratus_M_contig69:22945..57671+ (Fucus serratus male)back to top |