mRNA_F-serratus_M_contig689.17953.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig689.17953.1
Unique NamemRNA_F-serratus_M_contig689.17953.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig689.17953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig689contigF-serratus_M_contig689:307354..307660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size237
Cds size132
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig689.17953.1prot_F-serratus_M_contig689.17953.1Fucus serratus malepolypeptideF-serratus_M_contig689 307354..307556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932101.8453126-CDS-F-serratus_M_contig689:307353..3074601622932101.8453126-CDS-F-serratus_M_contig689:307353..307460Fucus serratus maleCDSF-serratus_M_contig689 307354..307460 +
1690964147.5777948-CDS-F-serratus_M_contig689:307353..3074601690964147.5777948-CDS-F-serratus_M_contig689:307353..307460Fucus serratus maleCDSF-serratus_M_contig689 307354..307460 +
1622932101.8787715-CDS-F-serratus_M_contig689:307531..3075561622932101.8787715-CDS-F-serratus_M_contig689:307531..307556Fucus serratus maleCDSF-serratus_M_contig689 307532..307556 +
1690964147.5964048-CDS-F-serratus_M_contig689:307531..3075561690964147.5964048-CDS-F-serratus_M_contig689:307531..307556Fucus serratus maleCDSF-serratus_M_contig689 307532..307556 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932101.893293-UTR-F-serratus_M_contig689:307556..3076601622932101.893293-UTR-F-serratus_M_contig689:307556..307660Fucus serratus maleUTRF-serratus_M_contig689 307557..307660 +
1690964147.6084917-UTR-F-serratus_M_contig689:307556..3076601690964147.6084917-UTR-F-serratus_M_contig689:307556..307660Fucus serratus maleUTRF-serratus_M_contig689 307557..307660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig689.17953.1

>prot_F-serratus_M_contig689.17953.1 ID=prot_F-serratus_M_contig689.17953.1|Name=mRNA_F-serratus_M_contig689.17953.1|organism=Fucus serratus male|type=polypeptide|length=44bp
PPLSYQNIQSLEKSPACHRARGTTQTRSPTLGTNPDTPERPTY*
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mRNA from alignment at F-serratus_M_contig689:307354..307660+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig689.17953.1 ID=mRNA_F-serratus_M_contig689.17953.1|Name=mRNA_F-serratus_M_contig689.17953.1|organism=Fucus serratus male|type=mRNA|length=307bp|location=Sequence derived from alignment at F-serratus_M_contig689:307354..307660+ (Fucus serratus male)
CCTCCCCTCTCATACCAAAACATACAGTCACTCGAAAAATCCCCTGCATG
CCATAGGGCCCGGGGTACAACACAAACCAGAAGTCCTACGCTAGGCACAA
ATCCTGAGGGCAAGGAGAGAGTTAAGGGTGAAGCTAGTCGGATACACAGT
AGCCGAATAGGGCCTGCGCTCTTATGTGTACGCCGGAACGCCCAACATAT
TGAGCTAAAACTTCTCGAATCCACGCGATTTGTGCTCAATACTGTTCTAA
TGGTTGCAGTGTCCACCTGTGGGCCCACGGGTTGCCCAGAAAGTCCTCCT
CCCCTCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig689:307354..307660+

>mRNA_F-serratus_M_contig689.17953.1 ID=mRNA_F-serratus_M_contig689.17953.1|Name=mRNA_F-serratus_M_contig689.17953.1|organism=Fucus serratus male|type=CDS|length=264bp|location=Sequence derived from alignment at F-serratus_M_contig689:307354..307660+ (Fucus serratus male)
CCTCCCCTCTCATACCAAAACATACAGTCACTCGAAAAATCCCCTGCATG
CCATAGGGCCCGGGGTACAACACAAACCAGAAGTCCTACGCTAGGCACAA
ATCCTGACCTCCCCTCTCATACCAAAACATACAGTCACTCGAAAAATCCC
CTGCATGCCATAGGGCCCGGGGTACAACACAAACCAGAAGTCCTACGCTA
GGCACAAATCCTGATACGCCGGAACGCCCAACATATTGATACGCCGGAAC
GCCCAACATATTGA
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