mRNA_F-serratus_M_contig688.17939.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig688.17939.1
Unique NamemRNA_F-serratus_M_contig688.17939.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig688.17939.1 vs. uniprot
Match: D8LGY8_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY8_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 4.910e-34
Identity = 77/104 (74.04%), Postives = 84/104 (80.77%), Query Frame = 3 
Query:  327 EGTTSLADMKRALRQNFLNTGVIDDVTARLRRQFILEVRRKGLGVPGAREAVAA-----RCRSAGGISLRERVLNSLVVDHLTSNGFLQSLAIFLPESGLGDSS 623
            EG  SL D+KRALR NF  TGVIDDVTARLRRQF+LE+RRKGLGVPGA+EA  A     R RS  GISL+ERVL+SLVVDHL SNG LQSLA+FLPESGLG  S
Sbjct:   45 EGGASLHDVKRALRDNFRATGVIDDVTARLRRQFVLELRRKGLGVPGAQEAAVAAGTCRRRRSPSGISLQERVLHSLVVDHLASNGLLQSLAVFLPESGLGGGS 148
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BLAST of mRNA_F-serratus_M_contig688.17939.1 vs. uniprot
Match: A0A835Z6Y0_9STRA (LisH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Y0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.720e-14
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 3 
Query:  315 GDGEEGTTSLADMKRALRQNFLNTGVIDDVTARLRRQFILEVRRKGLGVPGAREAVAARCRSAGGISLRERVLNSLVVDHLTSNGFLQSLAIFLPESG 608
            G+GE+   SL +++  LR +F  TGV+ D+TARLRRQF+ E+ +   G P  +  VA R  S   + L +R L +LV D L + G LQSLA+FLPESG
Sbjct:   11 GEGED-ELSLHELRDRLRTSFRETGVLADITARLRRQFVAELVQHHHGPPAMKALVANRQISE--LPLTQRQLRNLVADFLRAQGLLQSLAVFLPESG 105
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BLAST of mRNA_F-serratus_M_contig688.17939.1 vs. uniprot
Match: A0A1Y1HLP5_KLENI (Dystonin n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HLP5_KLENI)

HSP 1 Score: 58.2 bits (139), Expect = 3.310e-6
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 3 
Query:  324 EEGTTSLADMKRALRQNFLNTGVIDDVTARLRRQFILEVRRKGLGVPGAREAVAARCRSAGGISLRERVLNSLVVDHLTSNGFLQSLAIFLPESGL 611
            E G  S   +K  L  + L TGVID++  +LR Q + ++R           +V     SA   +L +R+LNSL +D+LTS G++ +L++F PE G+
Sbjct:    4 EGGQPSAEHLKSRLYSSLLETGVIDNLKTQLRTQILRQLR-------SVDSSVLDASPSAEPPALPQRILNSLFIDYLTSQGYVYTLSVFTPECGM 92
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig688.17939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGY8_ECTSI4.910e-3474.04LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z6Y0_9STRA5.720e-1446.94LisH domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1Y1HLP5_KLENI3.310e-635.42Dystonin n=1 Tax=Klebsormidium nitens TaxID=105231... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig688contigF-serratus_M_contig688:266290..270981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size682
Cds size549
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig688.17939.1prot_F-serratus_M_contig688.17939.1Fucus serratus malepolypeptideF-serratus_M_contig688 266290..270850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932100.1252186-CDS-F-serratus_M_contig688:266289..2664311622932100.1252186-CDS-F-serratus_M_contig688:266289..266431Fucus serratus maleCDSF-serratus_M_contig688 266290..266431 -
1690964146.8537502-CDS-F-serratus_M_contig688:266289..2664311690964146.8537502-CDS-F-serratus_M_contig688:266289..266431Fucus serratus maleCDSF-serratus_M_contig688 266290..266431 -
1622932100.1397834-CDS-F-serratus_M_contig688:266943..2670741622932100.1397834-CDS-F-serratus_M_contig688:266943..267074Fucus serratus maleCDSF-serratus_M_contig688 266944..267074 -
1690964146.863508-CDS-F-serratus_M_contig688:266943..2670741690964146.863508-CDS-F-serratus_M_contig688:266943..267074Fucus serratus maleCDSF-serratus_M_contig688 266944..267074 -
1622932100.1532145-CDS-F-serratus_M_contig688:270574..2708501622932100.1532145-CDS-F-serratus_M_contig688:270574..270850Fucus serratus maleCDSF-serratus_M_contig688 270575..270850 -
1690964146.8732402-CDS-F-serratus_M_contig688:270574..2708501690964146.8732402-CDS-F-serratus_M_contig688:270574..270850Fucus serratus maleCDSF-serratus_M_contig688 270575..270850 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932100.1725068-UTR-F-serratus_M_contig688:270850..2709811622932100.1725068-UTR-F-serratus_M_contig688:270850..270981Fucus serratus maleUTRF-serratus_M_contig688 270851..270981 -
1690964146.883324-UTR-F-serratus_M_contig688:270850..2709811690964146.883324-UTR-F-serratus_M_contig688:270850..270981Fucus serratus maleUTRF-serratus_M_contig688 270851..270981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig688.17939.1

>prot_F-serratus_M_contig688.17939.1 ID=prot_F-serratus_M_contig688.17939.1|Name=mRNA_F-serratus_M_contig688.17939.1|organism=Fucus serratus male|type=polypeptide|length=183bp
MSAVDRAHSFVGGSPPDPVLGRLGTVEAWAKDVERRATGGHGWDTVTNRD
GRYGDTEGVTGGDGEEGTTSLADMKRALRQNFLNTGVIDDVTARLRRQFI
LEVRRKGLGVPGAREAVAARCRSAGGISLRERVLNSLVVDHLTSNGFLQS
LAIFLPESGLGDSSAVSTAASDGADGEAAGRLE
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mRNA from alignment at F-serratus_M_contig688:266290..270981-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig688.17939.1 ID=mRNA_F-serratus_M_contig688.17939.1|Name=mRNA_F-serratus_M_contig688.17939.1|organism=Fucus serratus male|type=mRNA|length=4692bp|location=Sequence derived from alignment at F-serratus_M_contig688:266290..270981- (Fucus serratus male)
CTGAGAACGGTATCTGCAGGCTCTCCCATGCTACCAGTAAAAAGCTGTAC
CAAGAAAAAAGCGCCGGGATATAACTGGCGCCATATAACTGAAACTAGGA
ACGGGGGGTTTTATACGTTTCATCCAACGGCATGTCGGCGGTAGATCGAG
CTCATTCCTTCGTTGGAGGATCACCACCGGATCCTGTGCTTGGAAGGTTG
GGAACAGTCGAGGCGTGGGCGAAAGATGTGGAACGTAGAGCAACTGGAGG
ACATGGGTGGGATACTGTTACGAACAGAGATGGTAGATACGGCGACACGG
AGGGCGTTACAGGAGGGGACGGAGAGGAGGGCACAACATCGCTGGCCGAC
ATGAAGCGCGCGCTAAGGCAAAACTTTCTCAACACGGGCGTTATCGACGA
TGTTACGGTGAGACGACGTATGCAACTGTTTTTGCCACAGAATTACCTGG
GGAGGACCGTGGTGTTGGATACTCGTAAACTTGTTGCTGAGACAAGATCT
CAAACTAAGCCTGAGTACCGCTGCTTTAAACCATGAAATTAGACAGCAGA
GGTAAATAAATACATGGATGAGTTTTTGTTTTGTTTTTTTCCATCCCGTA
TATTCTGGACGTCAGACTACACCTTTCGGTTAGCACTGTGGACGCACCAG
CCGGGGTCACACAAGAGGAATCCGATACTGTATCAATACTGTCTGTACAA
AGTTGTGGGTCTTTCTTCATCGAATGCACCTCCTAGTAGTTAGTGGTACA
AGTACTCGTGTAAGGTTTGTTTCCAAAACAAAGCAGTCTCAAGGACAGCA
CTATAGAGCTAGACTAACAGGATACCGGTATTCTATTACAGTAGTAGTGC
ACATGGTACAAATTTATCGTGCAGCAGTAGTAGGACTGTACTCGTTGGCG
CGTTCAGTGACGTCCTGTTGCTGCCGCGGGAAGTACTGCTCGTGCAGTAT
TTGTTTTGCGTATTCTGCAGCACCAGTCGAGTGTACAGCCGTCCCGCCGT
TCCTTTCGCGACGAACATGTTAGATGTCGGCCAAACCATTCGTGACTCAG
TAGTCCAATCGTAAAAAAAATGACAGGGAAAAATTTAAAATTTAAAATTT
AGTTGTGGCAAACATTGAAATATAAAATACAGTGTACTGCAGTGCGTGGC
GAGGGAGAACCCCGAATCACTACTATTAATTATTAATACTGTCGCTACCG
GAAAAAAGGCCAGAGAGCCCAAGACACATCTTTTAAAGAAAATCTGAACG
CATCTAAACCTTCTGATCAGTCAAAAGGTAAGGTTTAGGTGGGAACATTG
GCTGTAGGAACAAACATCTCTACATGTTATTAAAAGGGCTCCCCAATGTT
GTTACATAGGGTCAACAACAGTATAATATCGGGGCGAAGCCCACCGTTAT
ACTGTCTGTACACTAACATTGATCGCCATGTAGGGACACCAAGACAAAAC
CATCAGACCACTAAATATATACCAGGTTGATCCATACTCTTGCTATATGT
GTGACCATACATATGCTAAAAGGCTAGTATTTTTGGACTAAGAGTAATAG
TCTACGGCACAGTAATATGGTAGAGAACAATATAAAGTTATAAGTAAGGT
TTGGTGTTTGTTATTTCTATTTCGATGCAGGAGGTCTACAAGTCATAGAT
GGTGGAGGGCCTCAAATTACAAATTACAACATGCCATTTAGAACTGATAC
CGTACAGTATATGTTTATGAAAGCAGGCGTTTGAAGTTAGTCACATACAG
CAAGCCAACCTTTATGGGAAACAGAAACGACATGAAAATACAGAAATGTG
AAATTTCTGTGGCGAAATTTTTGTAAATGTGGCGCTATGGGCCCCCTGCC
GCAGAAATTTCGCCCTACAGAAATGGCGAATTTCTGTGGGAGGTGTTTTT
TCTCTTCCCACATACAGAAATGAGGCTCATTTCTGTCTGTGGCTCGACAA
GTTTAGTTTGCCGCAGAAATGATTCACGCCTTCCAAGAACGATTGGAAGG
TCGGGACTGTAGTATCCCTCCTATCAAATATCGGCAAAGAAGAGCTCGCG
AGTGCTGTTGTACGATGGGTGCTGAGCAGCAGTAGTTGTGTGATGATCGC
CGGAGCAGCAGATTTGGAGGAAATTTATAGAATCTGTTGAGGTGATGGGC
CCGGGCAAGCAGATCTGGAGGAAATTTATAAAAGCTGTTGAGGTGATGGG
CCTGGACAAGCTGATCGCCGGCTTCGGGGGCGGTTGAATGGCTGGCGCCG
GAGATCAATCAAGCAGGGCCGGGCTGCGTGTCACGAGCGTCCGACGGCTC
GCCATCGAAACGATGTCGCTCTGCCCACTCTATTTGCGATGTACTCGTAA
TTAAGTACTAAATGACCCGGTCTCGCCGGACTAAATTCTCGGGCACAAAC
GCGGAGAGGGAAATACTATTTTCCCTGTTCAGTTGACCACGAGCAGGACT
GGCAACCTTACCCGGTTGATCCATACTCGCCATGTGTACATACTTGCACC
TGTCTTCGTGCGGTGATGGGTGGCCGAAAATGCCGTATGTACAAAAGTAT
ATAACATGTTTCTCGTGTTCTACGAAGGATACAACAGTAGCAGCTTTCAA
CAGTAGTAGATATAACTCGTGTGACGCGGCCAATGGTACCAACCGTTGCC
GCATCCACTGGTACCGATACTGCCATACATCAGTTGTTCCGAAGTACATG
GACACATAGAGATACATATATACAGCACATATATCATGTATAAAAAACTC
GAGCCCACGTACGGTACTGGCACCTCTCTTTGTTACTTATTATACATATA
TGGATAATATATAATGATTGTTCTGGACGGCATGACATTGGTACTTAAGA
GCGATGCTCTCTCTGGTTGACATACATCTAGTTGCAGGCCCGGCAACTTT
GTCACAGAGACATGGTAGGGACACCACGCTGCACCGGTTGTGGAGATCGA
GGTCCCCGTTCTTTTCTGTATTTGTCCTTGTCCCATAAACGACCAACTAC
AGTTTTTCCCCACAGATTTTTTGGCCACAGAAATGACAAATTTCTGTATT
TGCGTTTCTGTATTTGTCCTTGTCCCATAAACGACCAACTACAGTTTTTC
CCCACGGATTTTTTGGCCACAGAAATGACAAATTTCTGTATTTGCGTTTC
TGTATTTTGCGTTTCCCATAAAGGTTGGCCTAAGGTCAAAAGGATAAACC
GGGGATATAATTTACATCGGGAGATCAGGACAACAGTAATATGATGTGAT
GGGAGGCCTCAAATTACAACGGGCCATAGGGACTGATATACAGATATACA
GTAATAATGGAAGCAGGTGTAAAATACTTACAGCATCAGTGATGGAATTG
CAGGTTATGTAAGAGCAGGAGCAATGAAAGCAAAAGGTTTGGGTCAAAGA
TTTGAAGAAAGGCGAAGAGGGCGACCAGCAGATAGATGTCTTCAACATAA
TCCAGAAAAGACCAAACACGGTTGTTCACTTGAAAGTAGACGAAGCAATG
GAGAGCCGTCGATCGCGAAAGGAAATGAGGAGCAGGCAGGCGGAGAACCT
TCCTTACTATCTGTCAGGTCTATACTGCAAACGCGAGAGCTCCTCAAATC
CAACAGGTCCACGTAAGACCTAACACGATTCAGGAACTTCGGCTGCAAAA
ACAAAATAACAGATAAGCTCCTCATCGCCAACACCTATGACCTCCAGCTC
CCCCTAGATGTCGGCCAAACCATTGGATAATACTGAGTCACGTGACTCAA
TAGTCAATAGTCTAATGGTCTGGTCGACATCTAACAGAACATGCCGCTGT
CGGCGTGGCCCGTTTATCATTAGTTTCTCTACTACGCCGCGAGATCCGAT
CGACGCACCATATCTCACATCCACTCTCCTGACTCCTGACGAATTCTACG
TGGCCAGGCTAGGCTGCGACGTCAGTTTATATTGGAAGTGCGGCGCAAAG
GGCTTGGGGTGCCGGGGGCGAGAGAGGCGGTTGCCGCCCGGTGTCGATCA
GCCGGCGGGATATCCCTGAGAGAGAGGGTCTTAAACAGGTCGGAGTCCTG
CAGCTCTTTAGCTCCGCCTCTCTTCTAGTCCTCGTCTGTTGTCAGTTGCA
ACTTCGCGCATCCGAGCATTGGCGTTTTCTTCTTGTCCCTGTGTTCTGTG
CTCTGTGCTCGTGTACGGAACTGGGGTCGGGAGAAAATTTGTTTTCATCA
AGGGTCATCGAGTTTGTAAAATCCTAAAAAATCGTTTTAATACGAAGCGG
CTTCACTTCATACACAACCAGTAGGTAGCTTTTTGTCTCGGCGGACACAT
TATTAATATTATACTTCGTAGCTCAGACACAACCAAAAGGTAGCTACTGT
ACAAACTGAGCCGACCAATTTCATCGTCTGAGGCGTCCCGTGGCCATTGG
CAGAATGTCTTTACGTTAGGTTTGACTATAAAATGAGGTGATAACACACA
CATAGTCTAACGGCTCAAGCTGTGCGGCTTACCGCTTATCGAAGCAACCG
AAACCGCGCGCCCGGTGAATCCTACCGTACTCCTGTGTACGCTCCTGAAG
CCTGGTAGTGGACCACCTCACGAGCAATGGCTTCCTCCAGTCTCTCGCTA
TCTTTTTACCGGAATCGGGTCTGGGCGACTCCTCCGCCGTCTCCACCGCT
GCGTCTGACGGCGCAGACGGGGAGGCGGCGGGACGGCTCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig688:266290..270981-

>mRNA_F-serratus_M_contig688.17939.1 ID=mRNA_F-serratus_M_contig688.17939.1|Name=mRNA_F-serratus_M_contig688.17939.1|organism=Fucus serratus male|type=CDS|length=1098bp|location=Sequence derived from alignment at F-serratus_M_contig688:266290..270981- (Fucus serratus male)
ATGTCGGCGGTAGATCGAGCTCATTCCTTCGTTGGAGGATCACCACCGGA
TCCTGTGCTTGGAAGGTTGGGAACAGTCGAGGCGTGGGCGAAAGATGTGG
AACGTAGAGCAACTGGAGGACATGGGTGGGATACTGTTACGAACAGAGAT
GGTAGATACGGCGACACGGAGGGCGTTACAGGAGGGGACGGAGAGGAGGG
CACAACATCGCTGGCCGACATGAAGCGCGCGCTAAGGCAAAACTTTCTCA
ACACGGGCGTTATCGACGATGTTACGATGTCGGCGGTAGATCGAGCTCAT
TCCTTCGTTGGAGGATCACCACCGGATCCTGTGCTTGGAAGGTTGGGAAC
AGTCGAGGCGTGGGCGAAAGATGTGGAACGTAGAGCAACTGGAGGACATG
GGTGGGATACTGTTACGAACAGAGATGGTAGATACGGCGACACGGAGGGC
GTTACAGGAGGGGACGGAGAGGAGGGCACAACATCGCTGGCCGACATGAA
GCGCGCGCTAAGGCAAAACTTTCTCAACACGGGCGTTATCGACGATGTTA
CGGCTAGGCTGCGACGTCAGTTTATATTGGAAGTGCGGCGCAAAGGGCTT
GGGGTGCCGGGGGCGAGAGAGGCGGTTGCCGCCCGGTGTCGATCAGCCGG
CGGGATATCCCTGAGAGAGAGGGTCTTAAACAGGCTAGGCTGCGACGTCA
GTTTATATTGGAAGTGCGGCGCAAAGGGCTTGGGGTGCCGGGGGCGAGAG
AGGCGGTTGCCGCCCGGTGTCGATCAGCCGGCGGGATATCCCTGAGAGAG
AGGGTCTTAAACAGCCTGGTAGTGGACCACCTCACGAGCAATGGCTTCCT
CCAGTCTCTCGCTATCTTTTTACCGGAATCGGGTCTGGGCGACTCCTCCG
CCGTCTCCACCGCTGCGTCTGACGGCGCAGACGGGGAGGCGGCGGGACGG
CTCGAGCCTGGTAGTGGACCACCTCACGAGCAATGGCTTCCTCCAGTCTC
TCGCTATCTTTTTACCGGAATCGGGTCTGGGCGACTCCTCCGCCGTCTCC
ACCGCTGCGTCTGACGGCGCAGACGGGGAGGCGGCGGGACGGCTCGAG
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