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Homology
BLAST of mRNA_F-serratus_M_contig6848.17900.1 vs. uniprot
Match: D8LLP2_ECTSI (Protein cereblon n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP2_ECTSI) HSP 1 Score: 130 bits (327), Expect = 1.240e-29 Identity = 76/130 (58.46%), Postives = 83/130 (63.85%), Query Frame = 2
Query: 722 VVNRLTSRSEGLLVRTSPVGTTAEIRSGHGGSVSVDADGSG-------LAVMARGRHRFRLVEDLGWRRGVRYWKVVISPDLCTDPLRVPLPRAFR-----DSRG-------GRHWAVAIPASSLTPTPP 1054
VVNRL SR G V SPVGTTAE+RSGHGGS DADG G LA+MARGRHRFRLVEDLGWRRGV YWKVVI PD C R P+PRAFR D RG G HW +A+P ++ P
Sbjct: 141 VVNRLDSRRGGPHVGASPVGTTAEVRSGHGGSAE-DADGGGEXXXXGGLAMMARGRHRFRLVEDLGWRRGVLYWKVVICPDHCPGTFRPPVPRAFREFPGTDRRGRRRRRDGGNHWPMAVPRFAVVANSP 269
BLAST of mRNA_F-serratus_M_contig6848.17900.1 vs. uniprot
Match: A0A6H5KP54_9PHAE (CULT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP54_9PHAE) HSP 1 Score: 104 bits (259), Expect = 1.270e-20 Identity = 61/128 (47.66%), Postives = 70/128 (54.69%), Query Frame = 2
Query: 722 VVNRLTSRSEGLLVRTSPVGTTAEIRSGHGGSVSVDA------DGSGLAVMARGRHRFRLVEDLGWRRGVRYWKVVISPDLCTDPLRVPLPRAFRD-----------SRGGRHWAVAIPASSLTPTPP 1054
VVNRL SR AE+RSG S A DG GLA+MARGRHRFRLVEDLGWRRGVRYWKVVI D C + P+PRAFR+ GG HW +A+P ++ P
Sbjct: 200 VVNRLDSRXXXXXXXXXXXXXXAEVRSGXXXSAEDAAGGGEGGDGGGLAMMARGRHRFRLVEDLGWRRGVRYWKVVICSDHCPGTFQPPVPRAFREFPGTGRRGRRRRDGGNHWTMAVPRFAVVANSP 327
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 95.9 |
| Seed ortholog evalue | 2.3e-17 |
| Seed eggNOG ortholog | 2880.D8LLP2 |
| Preferred name | CRBN |
| KEGG ko | ko:K11793 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000151,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0009987,GO:0010498,GO:0016567,GO:0019538,GO:0019941,GO:0030163,GO:0031333,GO:0031461,GO:0031464,GO:0031974,GO:0031981,GO:0032092,GO:0032446,GO:0032459,GO:0032460,GO:0032462,GO:0032463,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033333,GO:0033334,GO:0033339,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0035107,GO:0035113,GO:0035118,GO:0035138,GO:0035239,GO:0035295,GO:0036211,GO:0042471,GO:0042472,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043269,GO:0043271,GO:0043393,GO:0043412,GO:0043496,GO:0043583,GO:0043632,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0048513,GO:0048519,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048736,GO:0048839,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051128,GO:0051129,GO:0051603,GO:0060173,GO:0060429,GO:0060562,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071599,GO:0071600,GO:0071704,GO:0080008,GO:0090073,GO:0090596,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234 |
| EggNOG free text desc. | proteasome-mediated ubiquitin-dependent protein catabolic process |
| EggNOG OGs | KOG1400@1,KOG1400@2759 |
| Ec32 ortholog description | Peptidase S16, lon N-terminal |
| Ec32 ortholog | Ec-04_005010.2 |
| COG Functional cat. | ADK |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04121 |
| Exons | 5 |
| Model size | 1159 |
| Cds size | 594 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932093.0096946-UTR-F-serratus_M_contig6848:8965..9087 | 1622932093.0096946-UTR-F-serratus_M_contig6848:8965..9087 | Fucus serratus male | UTR | F-serratus_M_contig6848 8966..9087 + |
| 1690964143.5233283-UTR-F-serratus_M_contig6848:8965..9087 | 1690964143.5233283-UTR-F-serratus_M_contig6848:8965..9087 | Fucus serratus male | UTR | F-serratus_M_contig6848 8966..9087 + |
| 1622932093.026905-UTR-F-serratus_M_contig6848:9273..9285 | 1622932093.026905-UTR-F-serratus_M_contig6848:9273..9285 | Fucus serratus male | UTR | F-serratus_M_contig6848 9274..9285 + |
| 1690964143.5364618-UTR-F-serratus_M_contig6848:9273..9285 | 1690964143.5364618-UTR-F-serratus_M_contig6848:9273..9285 | Fucus serratus male | UTR | F-serratus_M_contig6848 9274..9285 + |
| 1622932093.0838916-UTR-F-serratus_M_contig6848:12373..12398 | 1622932093.0838916-UTR-F-serratus_M_contig6848:12373..12398 | Fucus serratus male | UTR | F-serratus_M_contig6848 12374..12398 + |
| 1690964143.579129-UTR-F-serratus_M_contig6848:12373..12398 | 1690964143.579129-UTR-F-serratus_M_contig6848:12373..12398 | Fucus serratus male | UTR | F-serratus_M_contig6848 12374..12398 + |
| 1622932093.1009963-UTR-F-serratus_M_contig6848:13130..13280 | 1622932093.1009963-UTR-F-serratus_M_contig6848:13130..13280 | Fucus serratus male | UTR | F-serratus_M_contig6848 13131..13280 + |
| 1690964143.5887372-UTR-F-serratus_M_contig6848:13130..13280 | 1690964143.5887372-UTR-F-serratus_M_contig6848:13130..13280 | Fucus serratus male | UTR | F-serratus_M_contig6848 13131..13280 + |
| 1622932093.1184835-UTR-F-serratus_M_contig6848:13459..13715 | 1622932093.1184835-UTR-F-serratus_M_contig6848:13459..13715 | Fucus serratus male | UTR | F-serratus_M_contig6848 13460..13715 + |
| 1690964143.6015968-UTR-F-serratus_M_contig6848:13459..13715 | 1690964143.6015968-UTR-F-serratus_M_contig6848:13459..13715 | Fucus serratus male | UTR | F-serratus_M_contig6848 13460..13715 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932093.0505075-CDS-F-serratus_M_contig6848:9285..9616 | 1622932093.0505075-CDS-F-serratus_M_contig6848:9285..9616 | Fucus serratus male | CDS | F-serratus_M_contig6848 9286..9616 + |
| 1690964143.555058-CDS-F-serratus_M_contig6848:9285..9616 | 1690964143.555058-CDS-F-serratus_M_contig6848:9285..9616 | Fucus serratus male | CDS | F-serratus_M_contig6848 9286..9616 + |
| 1622932093.0663266-CDS-F-serratus_M_contig6848:12110..12373 | 1622932093.0663266-CDS-F-serratus_M_contig6848:12110..12373 | Fucus serratus male | CDS | F-serratus_M_contig6848 12111..12373 + |
| 1690964143.5680933-CDS-F-serratus_M_contig6848:12110..12373 | 1690964143.5680933-CDS-F-serratus_M_contig6848:12110..12373 | Fucus serratus male | CDS | F-serratus_M_contig6848 12111..12373 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6848.17900.1 >prot_F-serratus_M_contig6848.17900.1 ID=prot_F-serratus_M_contig6848.17900.1|Name=mRNA_F-serratus_M_contig6848.17900.1|organism=Fucus serratus male|type=polypeptide|length=198bp
MGDDSLWGGGPEETEIVWFGGSAPPQQQQQQQHPTPPSARPRSDDDLDNI IRSGMSNNSDSGSSSSGRSGSDDGMQDDERELQPQEVIVPQPTFQREPGT TGNDIAPASLVAALPTPATHAYLGEATTGSTLSRKDLEVGSTVEMPILSL PGVVLFPGESLPLRLHNAHATLAQSMLAGEARRTHGDQGQASRHLEW* back to topmRNA from alignment at F-serratus_M_contig6848:8966..13715+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig6848.17900.1 ID=mRNA_F-serratus_M_contig6848.17900.1|Name=mRNA_F-serratus_M_contig6848.17900.1|organism=Fucus serratus male|type=mRNA|length=4750bp|location=Sequence derived from alignment at F-serratus_M_contig6848:8966..13715+ (Fucus serratus male) GAAACTTGTCCCAGCGGATACCCGACCCACAACGCAGGATAGAGCATTTG
AAAGGGTGAGAATTATCTGCCTGGATCGAAAACATCGGTTCTAAATCGAA
AGGGCTGGTTCATCAAGGCAAGGTAAGCATGTGCGGTTTGGGAGTCTACA
CGCTTCTGGTATACGCTCTTAGAGCACAGTACTATTCAGCTGCATACCAT
ATTTTCTTTAGAGCTAGCTGTATAGAGCTATTACAGATTAATAGTCTTTG
TACAGAGCAGTACCAATAGCCCTTCTCTTTCCTTGATCAACCAATCTCGC
CAAACCAGACTTACGAGGGCATGGGCGACGATAGCCTATGGGGAGGGGGC
CCGGAGGAGACAGAGATCGTGTGGTTTGGTGGGAGCGCGCCGCCGCAACA
GCAGCAGCAGCAGCAGCATCCGACGCCTCCTTCAGCAAGGCCAAGAAGCG
ACGACGATCTCGACAACATTATTCGTAGCGGCATGAGCAACAACAGCGAC
AGTGGCAGCAGCAGCAGCGGCCGCAGCGGCAGCGATGACGGGATGCAAGA
TGACGAGCGAGAACTCCAGCCCCAGGAAGTGATTGTTCCGCAACCGACGT
TCCAACGCGAGCCAGGCACTACCGGCAACGATATCGCTCCTGCTAGCCTA
GGTTCGTGTGATATGCCGCCTTCGGGCGAAAGATCGACGACAGATCACCG
ACAAGAGGGTCTATGGTACTGGCGTGTGTTCTCCGTTGAGCTCTGTGTGC
CGTTTCGTACTCCAGCTTCAACCATCTTGACTTAGAGAAGCTCCCTCTCC
ATGGAAGTACAGTAGAAGCTCTACAACATTACAGTACAGTAGTACAAGCA
GCAGTAGGTAAAGAACGTTGTACAAGTTGCATGATTATTACTAAAATAAT
TGCGGCCTGCTTTCAACATCGAAAAGAACGTGTCACAGGCACGAGTATTA
GACTAGCCTTGAAGAAACACATGAGATATATACTGTATATTAGCGCCGGT
CGCCCCGGTAGCTCAGAGGTACCTCGTAACCCTCTGACACGTTGGGACGT
GAGTTCGATCCCGGCAAACGAGATTTTTCTCACTAAAAACTAAAATAAGG
GTGGAGAACGATTCAACGTTAGTACACAAAATTCGACTTCACGGTCGACG
AGGGAAAGGAACGACTGAATCCTTCTCGCGATAAAAATGAAGGCACGCAC
CGCAGAAGGAAGGTGGATGAGAAATCCTGTGTGACCTTCCTCCTGTGTGA
CCTCGGCTGGTACGTCCATTGATGTCCAGAATGGATGGGAAGAAAACATA
CACACACACACACACACACACACACTGGTATGTCGTTTAGGTATAGCAAT
TACATATAGCAGTGTATGGATCAACCGGGTAAGGTTACCAAACCTGCTCT
AGGTCAGCTGAACAAGAGAAAATGAATATTCATCCCCTGTCCACGTTCGC
GCCCGAGAATTTGGTCTGGCGAGACGGGTCGATTCATACTCTCCTGTGTA
TAATGATCATCCATACTATTTTCATAATACTATTCCTGGAATAAACGGAG
TATGTATGTACAGTATGGTTACACATACCAGTATAGCAGAGTACCGTATA
GATCAACCGGGTATGGCTGCCAATCCTGCTCGTGGTCAGTTGAACAGGGA
AAAATGAATATTTCCCTGTCCGCGTTCGCGCCTGAGAATTTGGCCTCGCG
ATACGGTTTCGGCAGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACTC
AGACTGAATATGGTGCTTACTTAGGGGATTCCTCCCGAGTTCCGCGGCGG
CGTCCATATATTTATTCTAAATCGCCATACGCCATCGGGTCAGTCCCGAG
TTTATCGGGTCACGCATTTGTGTACTGATGGCGTTTACTGCCGAGAGGCC
GCCGGCACAGGGGCAGCAAACCTCAAGGTAGTTCCGAACGAGTGCTGCCT
TGGCAGGTCACCATGGACCAATTAATATGCGCCTCTCTTTCCCGCACCCT
CTATATGGGTATGAAGTGGGCATGTTGAAAGTACCGACGACAGTATGTAT
GTATGGTCACACATATAGCAAGAGTGTTGATCAACCGGGTACCAACAAGT
GATAAGAAGTGCTAACCTTACGAACTCGTACAAAAACACACTGCTGTAGA
AGGGCGAACAAAAATTGTCTTCGTCTTCGTGTATGAATACACAAAATACC
ACTATGATACTGATGTTGTACCTACGGACTCATAAAGCCTGTGACACTGC
TGCGTGTGTGTTCTTCACGGTAACCAATCTGACCTCAACAATACCCAAAT
ACCCAGTAGTGTACCTGTACGCGGTGGCAACGTGGTCTGCTGGCCAGGAA
AATACCGGGGGGAACATGTGCAAAGCAAAGAAAGGAAAAACAGAAAATAT
ATAGGTATACTCGTACGACCCTATAGGCCCTTTCTTGTGAAGTGCCACAA
ACTACCATAAGAGCAATAGACTATATTGTAGAGGATACGGTACGTCGTGC
CTGGTGCGTAGTTTACTGTTTGTGCTGTAGTGTTCTGATGCCTCACCCCT
GAAGCTCGATCACTACTTCTTATATAAATATATGGACGCCGCCGCGGAAC
TCGGGAGGAATCCCGTAAGTAAGCACCAGATTCACCCTGAGTATGGAGAT
GAACAGCAGGCTGACGCGGGACGGGACTGCCGAAACCATCTCGCGAGACC
AAAATCTCAGGCACGAACGCGGACAGGGTAATATGGAATATTCATTTTTC
CTGTTCAGCTGACCACGAGCATGATTGACAACCATACCCGGTTGATCCAT
ATTACAGTATTGCTATATGTGTTACTATACATAATGCTCTTCTGTGCAGT
AGTTTGATGATTGTTCAGTTATAAGGTGAAAACTACGAGTATCCACGGTG
CATTGTCCCCGAAATACAGTACTTGAGCTGTGCTTAGATAGATTCGCCAC
GCAGCCATCCAGCGCAGCGGAGGTCGTGACTGATGACTGACCACAAATAC
CTCGTATGCATTGGGGTGACTGCGGAGAGGAAACCCGCGCTGCCGCCGAT
TTTCCCCCGAGTCATACCACCATTTTGTTCACCCACTCAAGGTTCCCCCC
GCCTTTCCCCCCCTCTCTCACCCCTCAATAACGCCTCCCTCACAGTAGCA
GCCCTGCCAACCCCTGCCACACACGCTTACCTGGGTGAGGCGACCACGGG
CTCCACCCTCTCGAGGAAAGACCTGGAAGTGGGCTCCACGGTGGAGATGC
CCATCCTATCCCTGCCAGGAGTGGTGCTATTCCCGGGGGAGTCGCTTCCG
TTGCGCCTCCACAATGCCCACGCGACCCTGGCACAGTCCATGCTCGCAGG
AGAGGCGAGGCGGACGCACGGCGATCAGGGGCAGGCGTCGCGACATCTCG
AGTGGTGAACAGGTTGACCTCGCGCAGCGAAGGGTGAGACACGCGCGACT
GTGCGAGTATTTCATGGTTCATTCCATGGTTCATTTCATGGTTTCCTGCT
TTGGTTTGGGCCCTGAACTGTCACGGGGGTTAAGAGTCTTAACACTGTGT
ACTGTAGCCCCTCGCTCTAGGAATAGGAAACGACGCAACGCATCGCGACC
AAGTATATTTTTGGTTTGCTTGTGCTGAAGAGTACCCAAGCATATGCTGC
CAAGCGGAAACGTTGGAAGATTGGCGATGGGGTGCAAATGGTCACCGTGT
TCTGCAGCTCTCTAGCTCCTCAAACGCTCTCGATAGTATAGTAGCAAGTT
TACCTCCTCAAAACACTCTGGCTGAACTAACTGCGCTTCAAAGCACCGAA
CAGCGAACAGTACCGACTAGAAGATTGGATGTCCTGGGTCCTTTGGAGCG
GCGGGGAGGGGGTCAATTCCTCGGACTCTGCCGTCGTCGACTCAAGTGTA
ACCTAGCTCCTGCATCGCCGTTGCATTCATTCTCAAAGCGTTATATAATC
AATGGTAAAAAGTTGAACTCGGTCGATCAATGTGCGTATTTCACGACGTC
TGGAGTCAAACACTCCGTTTTTATTGCGCTCACTTCCGTTAGCATCTATA
AACGTTAGTAATTGAAAAAGGCGAAAACACGACCGGTCGGTCCGATGGTA
TGAAATCAACTCTCCCCTACATCTACCTCCGCCCTTCATGTGCGTATGAC
GCGAAACGGCCGCAGGTTGCTGGTGAGGACGTCGCCCGTTGGTACTACCG
CGGAGATTCGATCGGGCCATGGGGGTTCCGTCAGCGTTGACGCGGACGGG
TCGGGGCTGGCAGTCATGGCGCGAGGGCGACACCGTTTTAGACTCGTCGA
AGACCTGGGTTGGAGGTGAGATAAATGTGTCCCTACTTTTGGAAGTTGCT
CTGCACCCTTGGGGGGGGGGGGGGGGGGGGGGGCGATCTCCACTCCCCTC
TAGCTCCCCCTCCCCGCCCCCAGTATCTCGACCCCGCCTCCTATAACGCA
GCGCTTTGTCGTTTCGCCGATCCAACAACCCCTTGGGGGTACAGACGAGG
CGTTCGCTACTGGAAGGTGGTCATCAGCCCCGACCTCTGTACCGATCCCC
TCCGGGTACCTCTCCCCCGAGCGTTCCGCGACTCTCGCGGCGGCCGGCAC
TGGGCCGTGGCGATCCCCGCTTCGTCGTTGACGCCAACTCCCCCACGGGG
CTGGTCACCCGGGCGACTTCCTCCTCCGCAGGCAGAGGGAGCACGAACCG
CCGACGATGGCCTCACGCCAAGGTGGAGCTGCCCGGGCAGGGGGCGGTGC
back to topCoding sequence (CDS) from alignment at F-serratus_M_contig6848:8966..13715+ >mRNA_F-serratus_M_contig6848.17900.1 ID=mRNA_F-serratus_M_contig6848.17900.1|Name=mRNA_F-serratus_M_contig6848.17900.1|organism=Fucus serratus male|type=CDS|length=1188bp|location=Sequence derived from alignment at F-serratus_M_contig6848:8966..13715+ (Fucus serratus male) ATGGGCGACGATAGCCTATGGGGAGGGGGCCCGGAGGAGACAGAGATCGT GTGGTTTGGTGGGAGCGCGCCGCCGCAACAGCAGCAGCAGCAGCAGCATC CGACGCCTCCTTCAGCAAGGCCAAGAAGCGACGACGATCTCGACAACATT ATTCGTAGCGGCATGAGCAACAACAGCGACAGTGGCAGCAGCAGCAGCGG CCGCAGCGGCAGCGATGACGGGATGCAAGATGACGAGCGAGAACTCCAGC CCCAGGAAGTGATTGTTCCGCAACCGACGTTCCAACGCGAGCCAGGCACT ACCGGCAACGATATCGCTCCTGCTAGCCTAGATGGGCGACGATAGCCTAT GGGGAGGGGGCCCGGAGGAGACAGAGATCGTGTGGTTTGGTGGGAGCGCG CCGCCGCAACAGCAGCAGCAGCAGCAGCATCCGACGCCTCCTTCAGCAAG GCCAAGAAGCGACGACGATCTCGACAACATTATTCGTAGCGGCATGAGCA ACAACAGCGACAGTGGCAGCAGCAGCAGCGGCCGCAGCGGCAGCGATGAC GGGATGCAAGATGACGAGCGAGAACTCCAGCCCCAGGAAGTGATTGTTCC GCAACCGACGTTCCAACGCGAGCCAGGCACTACCGGCAACGATATCGCTC CTGCTAGCCTAGTAGCAGCCCTGCCAACCCCTGCCACACACGCTTACCTG GGTGAGGCGACCACGGGCTCCACCCTCTCGAGGAAAGACCTGGAAGTGGG CTCCACGGTGGAGATGCCCATCCTATCCCTGCCAGGAGTGGTGCTATTCC CGGGGGAGTCGCTTCCGTTGCGCCTCCACAATGCCCACGCGACCCTGGCA CAGTCCATGCTCGCAGGAGAGGCGAGGCGGACGCACGGCGATCAGGGGCA GGCGTCGCGACATCTCGAGTGGTGATAGCAGCCCTGCCAACCCCTGCCAC ACACGCTTACCTGGGTGAGGCGACCACGGGCTCCACCCTCTCGAGGAAAG ACCTGGAAGTGGGCTCCACGGTGGAGATGCCCATCCTATCCCTGCCAGGA GTGGTGCTATTCCCGGGGGAGTCGCTTCCGTTGCGCCTCCACAATGCCCA CGCGACCCTGGCACAGTCCATGCTCGCAGGAGAGGCGAGGCGGACGCACG GCGATCAGGGGCAGGCGTCGCGACATCTCGAGTGGTGA back to top
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