mRNA_F-serratus_M_contig6846.17898.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6846.17898.1
Unique NamemRNA_F-serratus_M_contig6846.17898.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6846.17898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6846contigF-serratus_M_contig6846:23627..25573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size966
Cds size966
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6846.17898.1prot_F-serratus_M_contig6846.17898.1Fucus serratus malepolypeptideF-serratus_M_contig6846 23627..25573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932092.9001083-CDS-F-serratus_M_contig6846:23626..239311622932092.9001083-CDS-F-serratus_M_contig6846:23626..23931Fucus serratus maleCDSF-serratus_M_contig6846 23627..23931 +
1690964143.476848-CDS-F-serratus_M_contig6846:23626..239311690964143.476848-CDS-F-serratus_M_contig6846:23626..23931Fucus serratus maleCDSF-serratus_M_contig6846 23627..23931 +
1622932092.9202235-CDS-F-serratus_M_contig6846:24607..249831622932092.9202235-CDS-F-serratus_M_contig6846:24607..24983Fucus serratus maleCDSF-serratus_M_contig6846 24608..24983 +
1690964143.4966936-CDS-F-serratus_M_contig6846:24607..249831690964143.4966936-CDS-F-serratus_M_contig6846:24607..24983Fucus serratus maleCDSF-serratus_M_contig6846 24608..24983 +
1622932092.9577127-CDS-F-serratus_M_contig6846:25288..255731622932092.9577127-CDS-F-serratus_M_contig6846:25288..25573Fucus serratus maleCDSF-serratus_M_contig6846 25289..25573 +
1690964143.5098476-CDS-F-serratus_M_contig6846:25288..255731690964143.5098476-CDS-F-serratus_M_contig6846:25288..25573Fucus serratus maleCDSF-serratus_M_contig6846 25289..25573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6846.17898.1

>prot_F-serratus_M_contig6846.17898.1 ID=prot_F-serratus_M_contig6846.17898.1|Name=mRNA_F-serratus_M_contig6846.17898.1|organism=Fucus serratus male|type=polypeptide|length=322bp
ADLKLEATPIISAFLSEKSGRVAASAKRDHGHHSSLNLILHKSSDYVCHD
GGAKNDRSPRSATSKCGARQKSLDEIGIIVSPQHPPANTFLAPAMAEYCI
TRYTDAKDPVLVTRGEADQLADLVLGYGRMYSAFVADSTKVGEVKERVSS
ACAAAVKQGLFLGTEEGLVAVGPDVLPVHVHKHSVGATTSTRLAELVEGD
SSVKVPFGTHQRVVANKSAAAFGLEIKGSRMDGHGGFTSKNLGSTDAETP
ARGSFHIYNRTNQFLGPVKREGVPRYTTGDTETLRESCAPRKTGRRGQCC
VLSPTRPTPWFYANASANTDV*
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mRNA from alignment at F-serratus_M_contig6846:23627..25573+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6846.17898.1 ID=mRNA_F-serratus_M_contig6846.17898.1|Name=mRNA_F-serratus_M_contig6846.17898.1|organism=Fucus serratus male|type=mRNA|length=1947bp|location=Sequence derived from alignment at F-serratus_M_contig6846:23627..25573+ (Fucus serratus male)
GCCGACCTTAAACTGGAAGCGACCCCCATCATCTCCGCGTTCTTGAGCGA
GAAGTCCGGCCGTGTGGCAGCCTCTGCTAAACGTGACCACGGCCATCATT
CATCTTTGAATCTTATCCTGCACAAGAGCTCAGACTACGTATGCCACGAT
GGAGGTGCTAAAAACGACCGTTCGCCGCGGTCGGCGACATCTAAATGTGG
TGCCAGGCAGAAGAGCTTGGACGAAATAGGGATAATCGTGTCTCCACAAC
ACCCACCTGCCAACACCTTCCTCGCACCGGCCATGGCGGAGTATTGCATC
ACGCGGTAAGTTTAATAAACTTTGCTCCACTGCACTGTATGGGACGGTGA
GTACCCCCTGTCGCCCAATAATATAAAATACAAAAAACAACAACGAAATT
CGGAGTCCAGCAACTTCGAAGGCGGCAAATGAGTTAATAACTGTCGATGC
TGTCATCGTGCGAGTGTGTGTTGTCATCCCATTTATTCTGCACGTCACGT
TTGTGGACGCATCAGCCGGGCTTACACAGGAAGAAGATCACACATGATTT
CTCTACCTTTCTCCTGCGGTGCTTGCCTTCATTTTTCTCGCGACAAGGAT
TCAGCCGTTCCTTTCCCTCATCGACCGTGAAGTCGAATTCAACGATTTAA
TCGTTCTCCACTTGTTGGGGGTTTATTTTTATTTTTTTGTGAGGAAAAAT
TCAACTACGTGTGACGACAGCGAGATTCGAACTCACGTCCCAACTCTAGA
AGATTTCGAAGTCACCAACCGAATCACCGGGGCGACCGTATCACTATCTG
AGTAATATCGTCGCTGAAACGCCACTTTCTTTGCATACCCTACATACCAT
AGTATTTGTTGAAGTACCGTTATCAATGCGGTGGAATAGCGACTTATCCA
TTACAACGGGCAGTCTGGGTAGCATTGTTTTGATCGTGCCACACTTGACC
ACGACGTATCATTGTATCCTGTCTGTCGCAGGTACACGGACGCGAAAGAC
CCAGTTTTGGTCACGCGAGGCGAGGCTGACCAGCTCGCCGACCTCGTGCT
GGGGTATGGCCGGATGTACTCTGCATTCGTTGCCGACTCGACCAAAGTGG
GCGAGGTAAAGGAGAGGGTAAGTAGCGCTTGTGCCGCGGCTGTGAAGCAG
GGGTTGTTTCTGGGGACGGAAGAAGGCCTTGTTGCCGTTGGGCCGGACGT
CCTTCCTGTTCACGTCCATAAGCATAGCGTTGGAGCGACCACAAGCACTC
GCCTCGCAGAGCTGGTGGAGGGCGACTCTAGTGTTAAAGTTCCCTTCGGA
ACCCATCAGCGAGTGGTGGCTAATAAGTCGGCTGCAGCATTCGGCCTGGA
GATCAAAGTAAGCACCATTTGTGTTGGACCTGGTTTTCTAGAATCTACCA
CTCTCTACTTAGGAATAATGTTTTGTATATTTTTGTGCCATAACCGTTGG
CTTGGTTGGATGACGACGACCTCGCGGAAAATAATTCGTCTTGCGTGTCC
ATTTAGTTCTTGAGATTCATATTTTGGGGCCGGGCGTTTGGGTAGCTTAT
GTTGCCTTCGGGGGAAACCACCGTCCTCGGTACCTCTACCCTCGCGTTGA
ATTTCGGACCTTCCTCTCAACACTGCTACCTTCCCCGTATATATGTGATG
TTGCCGTTTCAGGGATCGAGGATGGACGGTCACGGTGGTTTCACTAGTAA
GAACCTCGGTTCCACGGACGCGGAAACCCCGGCTCGGGGATCCTTTCACA
TCTACAACCGGACGAACCAGTTTCTTGGGCCAGTGAAAAGGGAAGGGGTG
CCGAGGTACACCACTGGCGACACCGAGACACTGCGTGAATCCTGCGCCCC
TCGTAAAACAGGGAGGAGGGGGCAGTGTTGTGTCTTAAGCCCGACCCGTC
CAACCCCTTGGTTCTATGCCAATGCTTCCGCAAACACTGACGTATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6846:23627..25573+

>mRNA_F-serratus_M_contig6846.17898.1 ID=mRNA_F-serratus_M_contig6846.17898.1|Name=mRNA_F-serratus_M_contig6846.17898.1|organism=Fucus serratus male|type=CDS|length=1932bp|location=Sequence derived from alignment at F-serratus_M_contig6846:23627..25573+ (Fucus serratus male)
GCCGACCTTAAACTGGAAGCGACCCCCATCATCTCCGCGTTCTTGAGCGA
GAAGTCCGGCCGTGTGGCAGCCTCTGCTAAACGTGACCACGGCCATCATT
CATCTTTGAATCTTATCCTGCACAAGAGCTCAGACTACGTATGCCACGAT
GGAGGTGCTAAAAACGACCGTTCGCCGCGGTCGGCGACATCTAAATGTGG
TGCCAGGCAGAAGAGCTTGGACGAAATAGGGATAATCGTGTCTCCACAAC
ACCCACCTGCCAACACCTTCCTCGCACCGGCCATGGCGGAGTATTGCATC
ACGCGGCCGACCTTAAACTGGAAGCGACCCCCATCATCTCCGCGTTCTTG
AGCGAGAAGTCCGGCCGTGTGGCAGCCTCTGCTAAACGTGACCACGGCCA
TCATTCATCTTTGAATCTTATCCTGCACAAGAGCTCAGACTACGTATGCC
ACGATGGAGGTGCTAAAAACGACCGTTCGCCGCGGTCGGCGACATCTAAA
TGTGGTGCCAGGCAGAAGAGCTTGGACGAAATAGGGATAATCGTGTCTCC
ACAACACCCACCTGCCAACACCTTCCTCGCACCGGCCATGGCGGAGTATT
GCATCACGCGGTACACGGACGCGAAAGACCCAGTTTTGGTCACGCGAGGC
GAGGCTGACCAGCTCGCCGACCTCGTGCTGGGGTATGGCCGGATGTACTC
TGCATTCGTTGCCGACTCGACCAAAGTGGGCGAGGTAAAGGAGAGGGTAA
GTAGCGCTTGTGCCGCGGCTGTGAAGCAGGGGTTGTTTCTGGGGACGGAA
GAAGGCCTTGTTGCCGTTGGGCCGGACGTCCTTCCTGTTCACGTCCATAA
GCATAGCGTTGGAGCGACCACAAGCACTCGCCTCGCAGAGCTGGTGGAGG
GCGACTCTAGTGTTAAAGTTCCCTTCGGAACCCATCAGCGAGTGGTGGCT
AATAAGTCGGCTGCAGCATTCGGCCTGGAGATCAAAGTACACGGACGCGA
AAGACCCAGTTTTGGTCACGCGAGGCGAGGCTGACCAGCTCGCCGACCTC
GTGCTGGGGTATGGCCGGATGTACTCTGCATTCGTTGCCGACTCGACCAA
AGTGGGCGAGGTAAAGGAGAGGGTAAGTAGCGCTTGTGCCGCGGCTGTGA
AGCAGGGGTTGTTTCTGGGGACGGAAGAAGGCCTTGTTGCCGTTGGGCCG
GACGTCCTTCCTGTTCACGTCCATAAGCATAGCGTTGGAGCGACCACAAG
CACTCGCCTCGCAGAGCTGGTGGAGGGCGACTCTAGTGTTAAAGTTCCCT
TCGGAACCCATCAGCGAGTGGTGGCTAATAAGTCGGCTGCAGCATTCGGC
CTGGAGATCAAAGGATCGAGGATGGACGGTCACGGTGGTTTCACTAGTAA
GAACCTCGGTTCCACGGACGCGGAAACCCCGGCTCGGGGATCCTTTCACA
TCTACAACCGGACGAACCAGTTTCTTGGGCCAGTGAAAAGGGAAGGGGTG
CCGAGGTACACCACTGGCGACACCGAGACACTGCGTGAATCCTGCGCCCC
TCGTAAAACAGGGAGGAGGGGGCAGTGTTGTGTCTTAAGCCCGACCCGTC
CAACCCCTTGGTTCTATGCCAATGCTTCCGCAAACACTGACGTATAAGGA
TCGAGGATGGACGGTCACGGTGGTTTCACTAGTAAGAACCTCGGTTCCAC
GGACGCGGAAACCCCGGCTCGGGGATCCTTTCACATCTACAACCGGACGA
ACCAGTTTCTTGGGCCAGTGAAAAGGGAAGGGGTGCCGAGGTACACCACT
GGCGACACCGAGACACTGCGTGAATCCTGCGCCCCTCGTAAAACAGGGAG
GAGGGGGCAGTGTTGTGTCTTAAGCCCGACCCGTCCAACCCCTTGGTTCT
ATGCCAATGCTTCCGCAAACACTGACGTATAA
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