mRNA_F-serratus_M_contig6837.17886.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6837.17886.1
Unique NamemRNA_F-serratus_M_contig6837.17886.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6837.17886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6837contigF-serratus_M_contig6837:25..3502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size364
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6837.17886.1prot_F-serratus_M_contig6837.17886.1Fucus serratus malepolypeptideF-serratus_M_contig6837 92..3502 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932089.2035544-UTR-F-serratus_M_contig6837:24..911622932089.2035544-UTR-F-serratus_M_contig6837:24..91Fucus serratus maleUTRF-serratus_M_contig6837 25..91 +
1690964141.5517364-UTR-F-serratus_M_contig6837:24..911690964141.5517364-UTR-F-serratus_M_contig6837:24..91Fucus serratus maleUTRF-serratus_M_contig6837 25..91 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932089.2279093-CDS-F-serratus_M_contig6837:91..1691622932089.2279093-CDS-F-serratus_M_contig6837:91..169Fucus serratus maleCDSF-serratus_M_contig6837 92..169 +
1690964141.5667033-CDS-F-serratus_M_contig6837:91..1691690964141.5667033-CDS-F-serratus_M_contig6837:91..169Fucus serratus maleCDSF-serratus_M_contig6837 92..169 +
1622932089.2517874-CDS-F-serratus_M_contig6837:2934..30451622932089.2517874-CDS-F-serratus_M_contig6837:2934..3045Fucus serratus maleCDSF-serratus_M_contig6837 2935..3045 +
1690964141.5853078-CDS-F-serratus_M_contig6837:2934..30451690964141.5853078-CDS-F-serratus_M_contig6837:2934..3045Fucus serratus maleCDSF-serratus_M_contig6837 2935..3045 +
1622932089.2917147-CDS-F-serratus_M_contig6837:3394..35021622932089.2917147-CDS-F-serratus_M_contig6837:3394..3502Fucus serratus maleCDSF-serratus_M_contig6837 3395..3502 +
1690964141.598774-CDS-F-serratus_M_contig6837:3394..35021690964141.598774-CDS-F-serratus_M_contig6837:3394..3502Fucus serratus maleCDSF-serratus_M_contig6837 3395..3502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6837.17886.1

>prot_F-serratus_M_contig6837.17886.1 ID=prot_F-serratus_M_contig6837.17886.1|Name=mRNA_F-serratus_M_contig6837.17886.1|organism=Fucus serratus male|type=polypeptide|length=99bp
MNMSAWMDEDYSFDDWWRATHPGDSTSVRIKERIDAQVQAAQKQRQWNQP
LIGELLVPWDLSKSTFVLPAVEERLKEFLPLAESVNEDLAPQLNWVPTG
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mRNA from alignment at F-serratus_M_contig6837:25..3502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6837.17886.1 ID=mRNA_F-serratus_M_contig6837.17886.1|Name=mRNA_F-serratus_M_contig6837.17886.1|organism=Fucus serratus male|type=mRNA|length=3478bp|location=Sequence derived from alignment at F-serratus_M_contig6837:25..3502+ (Fucus serratus male)
GCACTTTCACTTTTGGCATTAGACAATTTAGGCAACGAAGATCTGCATTC
GTGGTACAGCTTCGACGATGAACATGAGCGCCTGGATGGATGAAGACTAT
AGCTTCGACGATTGGTGGCGAGCCACGCATCCTGGTGATAGCACGGTGAG
ACCTCATGTTCCTCGGACGGTAAGGGATGGTAAAAACAGTCCGTATCGTG
TGAGCGGAACCGCTTTATCTTCGAAGTGTGTCCACCGTCTCCAACTCAAG
GTGCTGTATTCTGAGAAGTAGATATTTTCTCACTCTGGATAAGGTTCGTA
GCCTCGGTGCGGACAAGAAGCGTGTGCTGGATCATTCTATCGTATAGCTG
GCCGGAGCTGCGATTGTCTTGATTTTCTCGCACTCGTACACGATCTCCTA
CAAGAGAAGAAAAGCACCGTGCCTCTTTTTGCTGATTAGCGCAAAATTTT
GGTGCAAGCAAAACTACCACCAGGCCTCTACCATCCGCCTCGTCTTCCCC
ATGAATGCCCCTGAGAGTCACTGAACTTCTCCCTACATCCCGCAACCTAG
GCACACTCAATATCCTACCCGCTATACTCTAGCTGTCCGTGTTCTCGTAC
TGTTTTTTATGTGGTTCGGACTTTCGGCGTATCTTGTCCTTGCAGCTGAA
GACTACGGCAAGATGTATAGTCAGCCCTAACCAATCAGATGTGAATCCCG
CTTGTGCTGGTCCCAAAGAGATCTGGAGGTCAACGGGTTGCATCATGGTG
GGGCCGTCCTACTCAAACCAAATAGGGTTCAAAAAGTCCTCGTGAGGCAT
AACCAACCGGAAACAACTGAAACATCATACCCGCGTCACGACAGAGCCTT
AGCCTTTGGGGTGTGAACTACATATTGTCTTCTTTCAAGGGTGCTGCCAG
CATTCGTGGATATGGGTGTGTGCGGCTCATTTCATCAAGTCATCATCGTA
AAGCAACTGCTGTACTACACACAGCAGCAGTACCTATGCTGTAGAATAAG
TTTTAGTGCTATCGCTAAAAAGTCACCCGACGAATGGTGAATCAGTGAAA
AATAAGTCCCTTTTCACACCGAACGTAACCCCGTTCAACTATTAACTACA
ATACTAAAGTAATATAATATACTGTAGCTGCTGTTGCACACCCACGTTCA
GCGCTATGTACCAGCAACAAAGGCGAAATAGTCACGCTCTGGTCAGTTCG
ACCAACCAAGCCCGCGTTTCTCAAAGGCGAAGTCATGCAGAAAAAATAAA
ACTCTTACACCAAGGCGCACGGTGGTGGCGGCCTTGGGGAGCTGTGAAGC
TGGCGCCCGAGCCAGTATCCACCCGTCCAAATCCCCAAGTTCCCTCGGAA
AGCGCCCCAGAAATCTTGCCCGTTCGCCGCTCCAGTTTGGATCTCGTAGG
AAGAAATCTGACCGTAGTCAGAAATCAGCTTTCTCCCCCACAACGCCCGG
ATGTCGCCATTGATTCTCGCGCACAAGGACTCAGCACCCCCTTGGTCCGT
CGACGATCGAGCTACCCTCCATCCTCACCGAATTTGGTATGTACTCGCCC
AGCAATACTTGCAATAACATGCTTGTGCGTGCAGCGCCACCCTGTCAAGC
TTTCCGCGACACCATCACCTGCCTCTAGCGTGCCGCGTGATCCCGAAGGA
CACCATATTGGCGTTCTGGAGGGGCGTACCGGGCGAAACCGTCCAGACAC
AACCAAGCTGCCACCGCTTGTCAATCAACCGACCGGGTCGGGTGGACAGC
CAAGTTACCTCTCGAGGGCGAGTACGGCCTTAACCCGCCTTAAAGACCGC
CCCCCCCAACTCCTACCTGGAAACAAAGTTTCGGAGGGAGAGGGTACGAT
ATACTCCGTATATATTATACCTGGTATGCAGTAGAGGAAGAAGTCGGGAC
TTGGTATCCTTTTGGTGGGCTCCACATTTTCTTGGGGGAAATGTGGACTT
TTCTGGAAAATCACGCAAAAAACATGAAACATAACTTTTGTTTTATTGTC
AATCGCATCAAACGGGAAAGATTGCCAATCCTGCTCGTAGTCATCTGAAG
AGGGAAATTGTTTTTTTTCGCCGTCCCCGTTCGTGCCTGAGAATTTGGTG
TTGCGAGACAGGCTCGGCCGTCCCAGGCAGTCAGTACTGCTTTATAAGTC
AAATCGATACTAATGCTGCATAGTACAGTAAAGTAAAGTAGTTCATCGAA
AAGTCTGAAGGCATCAAAGGCTTTCGAGCATCCAAAGGGGGATTGAGGTA
CTTGGATTAACAACACTACTCCGAAGCATACCGTCTTCGTACGGTACGGC
ATGATACGGTCTTCCGACGTGTTGTCTATGCCATGGTGTCATTTAGTGAG
AGACTCTTGGTAGGTTGTCCTGACTTTGAATGAGATGAGAATGCCGCGGT
GATCGTCAGACTGAACCCCAACGAGCTGGAAATCGGCAATCGAGTTACAC
GGCAAACTAAACCCTGCCTGTAGTTCCACTACTACTGTACTCAGTGTGAG
TTATAGCGCTTTCTCTTTCCCCCCATTTGAACTATTAGACTATGGTATCA
CTGTATTGTTGTAGCATACCGGCGGAAGTACTACAGTAGTAGTAGTCACT
GTCGTATCAATATAATAGTACAATATCGCATAGTATATACTCCCCCCCCC
CCGCTCTTTTTCTTCAGTAGGCCACGAGCGGGAATGGTCGCCGTGTTAAA
CAGTTCGGGTTGGCAGCCAATGCGCCAAATACTCGGCAAGAGTTTTTAGA
TGCGTTCACGACTTTCTTAAAAACAAGAAACTGCTTTGGAGACCTCCGCC
GTTTCCTCCGTCGACCTCGCTTGGCGATAAACTCTATAGCTAACAAACTC
TGTTCTAATGTGCTGCTGGACGTGTTCTGATCTGTCTGTTCGACGCGGGT
GCGCGAGCAGAGCGTCAGGATCAAGGAGCGGATCGACGCGCAGGTGCAGG
CTGCGCAGAAGCAGAGACAATGGAACCAACCGCTCATAGGCGAGCTCTTG
GTCCCGTGGGACTTGTCCAAGGTGATGACCACATAAATTGTAGATCGGAG
GTCAGATGATAAATGCTATTACTAGGTATCGGGACACGTGATAATTCGGA
GGTTGTACTGGAAGAAGCGAAGAGAGCAGAAATCGGCCTCATCTCAGTTA
ATGATCTCGCCTGCGGTGACCGGCGTCAGTTTTCTTGCCTTGCGCGAGAG
TCCACTCGTTCGTTCAGAATCCGTCGAAAGCGACCAAATCTCCGCACTGG
CGTGGTGGGGCGGACCCTATGAAATGAAACTTCGAAATAACTTCTTTCAA
AATACATTATGGCTGCTGCTGCTGCTGCTGTCGTTGTTGTTCTGGCAATT
CACCCCGTGTTTTTCTGAAGAGCACTTTCGTGCTCCCCGCCGTGGAGGAA
CGATTGAAAGAGTTCCTGCCCCTGGCAGAATCCGTGAACGAAGACTTGGC
CCCTCAGCTCAACTGGGTCCCGACCGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6837:25..3502+

>mRNA_F-serratus_M_contig6837.17886.1 ID=mRNA_F-serratus_M_contig6837.17886.1|Name=mRNA_F-serratus_M_contig6837.17886.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig6837:25..3502+ (Fucus serratus male)
ATGAACATGAGCGCCTGGATGGATGAAGACTATAGCTTCGACGATTGGTG
GCGAGCCACGCATCCTGGTGATAGCACGATGAACATGAGCGCCTGGATGG
ATGAAGACTATAGCTTCGACGATTGGTGGCGAGCCACGCATCCTGGTGAT
AGCACGAGCGTCAGGATCAAGGAGCGGATCGACGCGCAGGTGCAGGCTGC
GCAGAAGCAGAGACAATGGAACCAACCGCTCATAGGCGAGCTCTTGGTCC
CGTGGGACTTGTCCAAGAGCGTCAGGATCAAGGAGCGGATCGACGCGCAG
GTGCAGGCTGCGCAGAAGCAGAGACAATGGAACCAACCGCTCATAGGCGA
GCTCTTGGTCCCGTGGGACTTGTCCAAGAGCACTTTCGTGCTCCCCGCCG
TGGAGGAACGATTGAAAGAGTTCCTGCCCCTGGCAGAATCCGTGAACGAA
GACTTGGCCCCTCAGCTCAACTGGGTCCCGACCGGCAGCACTTTCGTGCT
CCCCGCCGTGGAGGAACGATTGAAAGAGTTCCTGCCCCTGGCAGAATCCG
TGAACGAAGACTTGGCCCCTCAGCTCAACTGGGTCCCGACCGGC
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