mRNA_F-serratus_M_contig6835.17884.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6835.17884.1
Unique NamemRNA_F-serratus_M_contig6835.17884.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6835.17884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6835contigF-serratus_M_contig6835:10282..12405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size167
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932088.9041843-CDS-F-serratus_M_contig6835:10281..103641622932088.9041843-CDS-F-serratus_M_contig6835:10281..10364Fucus serratus maleCDSF-serratus_M_contig6835 10282..10364 +
1690964141.471663-CDS-F-serratus_M_contig6835:10281..103641690964141.471663-CDS-F-serratus_M_contig6835:10281..10364Fucus serratus maleCDSF-serratus_M_contig6835 10282..10364 +
1622932088.9191973-CDS-F-serratus_M_contig6835:12321..124031622932088.9191973-CDS-F-serratus_M_contig6835:12321..12403Fucus serratus maleCDSF-serratus_M_contig6835 12322..12403 +
1690964141.4840531-CDS-F-serratus_M_contig6835:12321..124031690964141.4840531-CDS-F-serratus_M_contig6835:12321..12403Fucus serratus maleCDSF-serratus_M_contig6835 12322..12403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6835.17884.1prot_F-serratus_M_contig6835.17884.1Fucus serratus malepolypeptideF-serratus_M_contig6835 10282..12403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6835.17884.1

>prot_F-serratus_M_contig6835.17884.1 ID=prot_F-serratus_M_contig6835.17884.1|Name=mRNA_F-serratus_M_contig6835.17884.1|organism=Fucus serratus male|type=polypeptide|length=55bp
ASRPRAGSCAPCIDPKGFALRCTNITIKLRHIVGSVLKDRAAQVEHVTTE
HIVPP
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mRNA from alignment at F-serratus_M_contig6835:10282..12405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6835.17884.1 ID=mRNA_F-serratus_M_contig6835.17884.1|Name=mRNA_F-serratus_M_contig6835.17884.1|organism=Fucus serratus male|type=mRNA|length=2124bp|location=Sequence derived from alignment at F-serratus_M_contig6835:10282..12405+ (Fucus serratus male)
GCTTCCCGACCAAGAGCAGGCTCGTGCGCCCCCTGTATCGATCCCAAAGG
TTTCGCTTTGCGCTGCACCAACATCACCATTAAGTGAGTCGAGACTCGGT
CGGATTCCCACTCTCTCCCCATTCCCCCGCGCGTCTGCTTTCATCGTCTC
TCTATCCCCCCCGCATCAGCACCCGTGCCTGTCCTCCCACCATAATCTTT
GCTGTAGAGCTCTTTTTCAATTGCAACAGGCGCTTGCGTGCGGCTGTCTT
TGCCTTTCGCCTTTTGAAGATTGCGCTCTTGTCGGGAGATCTTTACAGGT
ACCGCAAACGAGAGTTACACGATTTAACCGGGGGTGGAAGGCGTTTTTGA
CAGGGGAAGGTATGTCCGTGGTCAAGCGCTTGCGAAAAGGTCTGTTCGAC
CGGGGCTAAGGTAGTATAGTTATGCTAGGATCAAATGCCGCCTATGTTCG
CACGTCCAAGACATATTTCATTGTGGGATCAAAAAGGTCAAAGCTGCGCA
CATCCAGGGTCGCAGGAAGATGTATGATTTTTACTCACCTTTCGTCTCTC
CTTGGCGGATGGTCGTGCACCCCCAAAAGAGCCGCAACCGGCTTCGGCGA
TTTTTTAGCCGTCTCCACCGCCGGCGCTTTATTAGCCGTCTCCACCGCCG
GAGCTTTTTTAGCCGTCTCCACCGCCGGCGCTTTTTTAGCAGTCTTCACC
GCCGTCGCTTTATTAGCCTTCTCCACCGCCGGCGCTATTTTAGCCGTCTC
CACCGCCGGCGCTTTTTTAGCCGTCTCCACCGCCGGCGCTTTTTTAGCCG
TCTCCACCGCCGGCGCTTTTTTAGCCGTCTCCATCGCCGCCGCTTTTTTA
GTCGTATCCACCGCCGGCGCTTTTTTAGCCGTCTCTACCGCGCCATTGTC
CACACCTGCAGGAGACATGGATAAGTGCGACTTCCAAGAGCTTGCCGACG
CGGTGCTGCTGGGCGTGTCAGCGCGACTGTCGCCATCGTCGGTTACGCAC
CCATCGTGGCTTCCCGACCAAGAGCAGGCTCGTGCGCCCCCTGTATCGAT
CCCAAAGGTTTCGCTTTGCGCTGCACCAACATCACCATTAAGTGAGTCGA
GACTCGGTCGGATTCCCACTCTCTCCCCATTCCCCCGCGCGTCTGCTTTC
ATCGTCTCTCTATCCCCCCCGCATCAGCACCCGTGCCTGTCCTCCCACCA
TAATCTTTGCTGTAGAGCTCTTTTTCAATTGCAACAGGCGCTTGCGTGCG
GCTGTCTTTGCCTTTCGCCTTTTGAAGATTGCGCTCTTGTCGGGAGATCT
TTACAGGTACCGCAAACGAGAGTTACACGATTTAACCGGGGGTGGAAGGC
GTTTTTGACAGGGGAAGGTATGTCCGTGGTCAAGCGCTTGCGAAAAGGTC
TGTTCGACCGGGGCTAAGGTAGTATAGTTATGCTAGGATCAAATGCCGCC
TATGTTCGCACGTCCAAGACATATTTCATTGTGGGATCAAAAAGGTCAAA
GCTGCGCACATCCAGGGTCGCAGGAAGATGTATGATTTTTACTCACCTTT
CGTCTCTCCTTGGCGGATGGTCGTGCACCCCCCAAAAGAGCCGCAACCGG
CTTCGGCGTTTTTTTAGCCATCTCCACCGCCGGCGCTTTATTAGCCGTCT
CCACCACCGGAGCTTTTTTAGCCGTCTCCACCGCCGTCGCGTTTTTAGCA
GTCTCCACCGCCGTCGCTTTATTAGCCGTCTCCACCGCCGTCGCTTTTTT
AGCCGTCTCCACCGCCGTCGCTTTTTTAGCCGTCTCCACCGCCGGCGCTT
TTTTAGCCGTCTCCACCGCCGGCGCTTTTTTAGCCGTCTCCACCGCCGGC
GCTTTTTTAGCCGTCTCCACCGCCGGCGCTTTGTTAGCCGTCTCCACCGC
CGGCGCTTTTTTAGCCGTCTCCACCGCAGGCGCTTTTTTAGCCGTCTCCA
CCGCCGGCGCTCTTTTACCGTCTCTACCGCCGCCGCTTTTTCTGCCTGCC
AACATTTTCCACTCACAAATTTCTTCTGCGGGATTTGGAGACTAAGGCAC
ATCGTGGGCTCGGTGCTGAAGGATCGCGCGGCGCAGGTGGAGCACGTCAC
TACCGAGCACATCGTACCGCCGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6835:10282..12405+

>mRNA_F-serratus_M_contig6835.17884.1 ID=mRNA_F-serratus_M_contig6835.17884.1|Name=mRNA_F-serratus_M_contig6835.17884.1|organism=Fucus serratus male|type=CDS|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig6835:10282..12405+ (Fucus serratus male)
GCTTCCCGACCAAGAGCAGGCTCGTGCGCCCCCTGTATCGATCCCAAAGG
TTTCGCTTTGCGCTGCACCAACATCACCATTAAGCTTCCCGACCAAGAGC
AGGCTCGTGCGCCCCCTGTATCGATCCCAAAGGTTTCGCTTTGCGCTGCA
CCAACATCACCATTAAACTAAGGCACATCGTGGGCTCGGTGCTGAAGGAT
CGCGCGGCGCAGGTGGAGCACGTCACTACCGAGCACATCGTACCGCCGAC
TAAGGCACATCGTGGGCTCGGTGCTGAAGGATCGCGCGGCGCAGGTGGAG
CACGTCACTACCGAGCACATCGTACCGCCG
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