mRNA_F-serratus_M_contig6814.17876.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6814.17876.1
Unique NamemRNA_F-serratus_M_contig6814.17876.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6814.17876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6814contigF-serratus_M_contig6814:19922..23059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size167
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932087.7415693-CDS-F-serratus_M_contig6814:19923..200051622932087.7415693-CDS-F-serratus_M_contig6814:19923..20005Fucus serratus maleCDSF-serratus_M_contig6814 19924..20005 -
1690964140.9618652-CDS-F-serratus_M_contig6814:19923..200051690964140.9618652-CDS-F-serratus_M_contig6814:19923..20005Fucus serratus maleCDSF-serratus_M_contig6814 19924..20005 -
1622932087.782472-CDS-F-serratus_M_contig6814:22976..230591622932087.782472-CDS-F-serratus_M_contig6814:22976..23059Fucus serratus maleCDSF-serratus_M_contig6814 22977..23059 -
1690964140.9773898-CDS-F-serratus_M_contig6814:22976..230591690964140.9773898-CDS-F-serratus_M_contig6814:22976..23059Fucus serratus maleCDSF-serratus_M_contig6814 22977..23059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6814.17876.1prot_F-serratus_M_contig6814.17876.1Fucus serratus malepolypeptideF-serratus_M_contig6814 19924..23059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6814.17876.1

>prot_F-serratus_M_contig6814.17876.1 ID=prot_F-serratus_M_contig6814.17876.1|Name=mRNA_F-serratus_M_contig6814.17876.1|organism=Fucus serratus male|type=polypeptide|length=55bp
ASRPRAGSCAPCIDPKGFALRCTNITIKLRHIVGSVLKDRAAQVEHVTTE
HIVPP
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mRNA from alignment at F-serratus_M_contig6814:19922..23059-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6814.17876.1 ID=mRNA_F-serratus_M_contig6814.17876.1|Name=mRNA_F-serratus_M_contig6814.17876.1|organism=Fucus serratus male|type=mRNA|length=3138bp|location=Sequence derived from alignment at F-serratus_M_contig6814:19922..23059- (Fucus serratus male)
GCTTCCCGACCAAGAGCAGGCTCGTGCGCCCCCTGTATCGATCCCAAAGG
TTTCGCTTTGCGCTGCACCAACATCACCATTAAGTGAGTCGAGACTCGGT
CGGATTCCCACTCTCTCCCCATTCCCCCGCGCGTCTGCTTTCATCGTCTC
TCTATCCCCCCCCGCATCAGCACCCGTGCCTGTCCTCCCACCATAATCTT
TGCTGTAGAGCTCTTTTTCAATTGCAACAGGCGCTTGCGTGCGGCTGTCT
TTGCCTTTCGCCTTTTGAAGATTGCGCTCTTGTCGGGAGATCTTTACAGG
TACCGCAAACGAGAGTTACACGATTTAACCGGGGGTGGAAGGCGTTTTTG
ACAGGGGAAGGTATGTCCGTGGTCAAGCGCTTGCGAAAAGGTCTGTTCGA
CCGGGGCTAAGGTAGTATAGTTATGCTAGGATCAAATGCCGCCTATGTTC
GCACGTCCAAGACATATTTCATTGTGGGATCAAAAAGGTCAAAGCTGCGC
ACATCCAGGGTCGCAGGAAGATGTATGATTTTTACTCACCTTTCGTCTCT
CCTTGGCGGATAGTCGTGCACCCCCCAAAAGAGCCGCAACCGGCTTCGGC
GTTTTTTTAGCCGTCTCCACCGCCGGCGCTTTATTAGCCGTCTCCACCGC
CGGAGCTTTGTTAGCCGTCTTCACCGCCGGCGCTTTATTAGCAGTCTCCA
CCGCCGTCGCTTTATTAGCCTTCTCCACCGCCGTCGCTTTTTTAGCCGTC
TCCACCGCCGGCGCTATTTTAGCCGTCTCCACCGCCGGCGCTTTTTTAGC
CGTCTCCACCGCCGGCGCTTTTTTAGCCGTCTCCACCGCCGGCGCTTTTT
TAGCCGTCTCCATCGCCGGCGCTTTTTTAGTCGTATCCACCGCCGGCGCT
TTTTTAGCCGTCTCTACCGCGCCATTGTCCACACCTGCAGGAGACATGGA
TAAGTGCGACTTCCAAGAGCTTGCCGACGCGGTGCTGCTGGGCGTGTCAG
CGCGACTGTCGCCATCGTCGGTTACGCACCCATCGTGGCTTCCCGACCAA
GAGCAGGCTCGTGCGCCCCCTGTATCGATCCCAAAGGTTTCACTTTGCGC
TGCACCAACATCACCATTAAGTGAGTCGAGACTCGGTCGGATTCCCACTC
TCTCTCTATTCCCCCGCGCGTCTGCTTTCATCGTCTCTCTATCCCCCCCC
GCATCAGCACCCGTGCCTGTCCTCCCACCATAATCTTTGCTGTAGAGCTC
TTTTTCAATTGCAACAGGCGCTTGCGTGCGGCTGTCTTTGCCTTTCGCCT
TTTGAAGATTGCGCTCTTGTCGGGAGATCTTTACAGGTACCGCAAACGAG
AGTTACACGATTTAACCGGGGGTGGAAGGCGTTTTTGACAGGGGAAGGTA
TGCCCGTGGTCAAGCGCTTGCGAAAAGGTCTGTTCGACCGGGGCTAAGGT
AGTATAGTTATGCTAGGATCAAATGCCGCCTATGTTCGCACGTCCAAGAC
ATATTTCATTGTGGGATCAAAAAGGTCAAAGCTGCGCACATCCAGGGTCG
CAGGAAGATGTATGATTTTTACTCACCTTTCGTCTCTCCTTGGCGGATAG
TCGTGCACCCCCCAAAAGAGCCGCAACCGGCTTCGGCGTTTTTTTAGCCG
TCTCCACCGCCGGCGCTTTATTAGCCGTCTCCACCGCCGGAGCTTTTTTA
GCCGTCTTCACCGCCGGCGCTTTATTAGCAGTCTTCACCGCCGTCGCTTT
ATTAGCCTTCTCCACCGCCGGCGCTATTTTAGCCGTCTCCACCGCCGGCG
CTTTTTTAGCCGTCTCCACCGCCGGCGCTTTTTTAGCCGTCTCCACCGCC
GGCGCTTTTTTAGCCGTCTCCATCGCCGGCGCTTTTTTAGTCGTATCCAC
CGCCGGCGCTTTTTTAGCCGTCTCTACCGCGCCATTGTCCACACCTGCAG
GAGACATGGATAAGTGCGACTTCCAAGAGCTTGCCGACGCGGTGCTGCTG
GGCGTGTCAGCGCGACTGTCGCCATCGTCGGTTACGCACCCATCGTGGCT
TCCCGACCAAGAGCAGGCTCGTGCGCCCCCTGTATCGATCCCAAAGGTTT
CACTTTGCGGTGCACCAACATCACCATTAAGTGAGTCGAGACTCGGTCGG
ATTCCCACTCTCTCCCCATTCCCCCGCGCGTCTGCTTTCATCGTCTCTCT
ATCCCCCCCCGCATCAGCACCCGTGCCTGTCCTCCCACCATAATCTTTGC
TGTAGAGCTCTTTTTCAATTGCAACAGGCGCTTGCGTGCGGCTGTCTTTG
CCTTTCGCCTTTTGAAGATTGCGCTCTTGTCGGGAGATCTTTACAGGTAC
CGCAAACGAGAGTTACACGATTTAACCGGGGGTGGAAGGCGTTTTTGACA
GGGGAAGGTATGTCCGTGGTCAAGCGCTTGCGAAAAGGTCTGTTCGACCG
GGGCTAAGGTAGTATAGTTATGCTAGGATCAAATGCCGCCTATGTTCGCA
CGTCCAAGACATATTTCATTGTGGGATCAAAAAGGTCAAAGCTGCGCACA
TCCAGGGTCGCAGGAAGATGTATGATTTTTACTCACCTTTCGTCTTTCCT
TGGCGGATAGTCGTGCACCCCCCAAAAGAGCCGCAACCGGCTTCGGCGTT
TTTTTAGCCGTCTCCACCGCCGGCGCTTTATTAGCCGTCTCCACCGCCGG
AGCTTTTTTAGCCGTCTCCACCGCCGTCGCGTTTTTAGCAGTCTCCACCG
CCGTCGCTTTATTAGCCGTCTCCACCGCCGTCGCTTTTTTAGCCGTCTCC
ACCGCCGGCGCTATTTTAGCCGTCTCCACCGCCGGCGCTTTTTTAGCCGT
CTCCACCGCCGGCGCTTTTTTAGCCGTCTCCACCGCCGGCGCTTTGTTAG
CCGTCTCCACCGCCGGCGCTTTTTTAGCCGTCTCCACCGCAGGCGCTTTT
TTAGCCGTCTCCACCGCCGGCGCTTTTTTAGCCGTCTCTACCGCCGCCGC
TTTTTCTGCCTGCCAACATTTTCCACTCACAAATTTCTTCTGCGGGATTT
GGAGACTAAGGCACATCGTGGGCTCGGTGCTGAAGGATCGCGCGGCGCAG
GTGGAGCACGTCACTACCGAGCACATCGTACCGCCGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6814:19922..23059-

>mRNA_F-serratus_M_contig6814.17876.1 ID=mRNA_F-serratus_M_contig6814.17876.1|Name=mRNA_F-serratus_M_contig6814.17876.1|organism=Fucus serratus male|type=CDS|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig6814:19922..23059- (Fucus serratus male)
GCTTCCCGACCAAGAGCAGGCTCGTGCGCCCCCTGTATCGATCCCAAAGG
TTTCGCTTTGCGCTGCACCAACATCACCATTAAGCTTCCCGACCAAGAGC
AGGCTCGTGCGCCCCCTGTATCGATCCCAAAGGTTTCGCTTTGCGCTGCA
CCAACATCACCATTAAACTAAGGCACATCGTGGGCTCGGTGCTGAAGGAT
CGCGCGGCGCAGGTGGAGCACGTCACTACCGAGCACATCGTACCGCCGAC
TAAGGCACATCGTGGGCTCGGTGCTGAAGGATCGCGCGGCGCAGGTGGAG
CACGTCACTACCGAGCACATCGTACCGCCG
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