mRNA_F-serratus_M_contig6810.17875.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6810.17875.1
Unique NamemRNA_F-serratus_M_contig6810.17875.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 77.4 bits (189), Expect = 8.150e-15
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   16 VYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
            V+ +V R +D+ +IG+K ++K K G D +VEKYK RLVAQGF QVEG+ Y E ++P   + SIR+LLA AA
Sbjct: 1026 VFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAA 1096          
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 72.0 bits (175), Expect = 6.320e-13
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 1
Query:   16 VYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
            +Y++V R +D+ V+G K +++ K G D ++EKYK R+VA+GF QVEGV YT+ ++P     SIR LLA AA
Sbjct:  313 LYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAA 383          
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A235B279_9BACL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paludifilum halophilum TaxID=1642702 RepID=A0A235B279_9BACL)

HSP 1 Score: 65.5 bits (158), Expect = 2.490e-12
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    1 MVENCVYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
            M +N ++  V R KDK VIGTK ++K K+ +D KV + K RLV +G+ Q EG+ Y E ++P      +R LLA AA
Sbjct:    1 MEKNKIWTLVPRPKDKNVIGTKWVFKNKLNEDGKVSRNKARLVCKGYSQEEGIDYRETFAPIARLEGVRTLLAYAA 76          
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 68.9 bits (167), Expect = 7.460e-12
Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   16 VYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
            ++++V   K++ V+G+K +++ K G + K+EKYK RLVAQGF QV+G+ YTE ++P    +SIR LL+ AA
Sbjct:   25 LFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAA 95          
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI)

HSP 1 Score: 67.8 bits (164), Expect = 1.980e-11
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   19 YNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
            Y++V R +++ V+G K +++ K G D  VE+YK RLVAQGF QVEG+ Y+E ++P     SIR +L  AA
Sbjct:  962 YDEVERPQNRKVVGCKWVFRLKRGADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIRTVLTLAA 1031          
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A0J7K7I2_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K7I2_LASNI)

HSP 1 Score: 67.0 bits (162), Expect = 3.570e-11
Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    1 MVENCVYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
            +++N  +    R  D +VIG++M+ + K+G D+K+E+ K RLVAQGF+Q  GVH++E ++P     SIR++ A AA
Sbjct:    8 IIKNDTWELDERPDDSIVIGSRMVLRNKLGPDNKLERRKARLVAQGFYQQPGVHFSETFAPVARLGSIRLIAALAA 83          
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A6I9TKF2_SESIN (uncharacterized protein LOC105164425 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TKF2_SESIN)

HSP 1 Score: 65.5 bits (158), Expect = 1.270e-10
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   46 KLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAS 231
            K  IG+K ++K K+  D  +E+YK RLVA+GF Q+EGV YTE +SP   AV +R+ L+ AA+
Sbjct:  652 KRAIGSKWVFKVKLRADGSIERYKARLVAKGFNQIEGVDYTESFSPVAKAVIVRLFLSLAAA 713          
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A1J3CJ10_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CJ10_NOCCA)

HSP 1 Score: 64.7 bits (156), Expect = 2.330e-10
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   55 IGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
            IG K +YK K+ +D KVEKYK RLVA+G+ Q  GV YTE ++P     +IR++LATAA
Sbjct:   66 IGVKWVYKTKLNEDGKVEKYKARLVAKGYAQCYGVDYTEVFAPVARLDTIRVILATAA 123          
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A2I4GRT0_JUGRE (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Juglans regia TaxID=51240 RepID=A0A2I4GRT0_JUGRE)

HSP 1 Score: 61.6 bits (148), Expect = 3.630e-10
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   10 NCVYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATA 225
            N  +  V+R  D  VIG+K +YK K+  D  +E+ K RLVA+GF QV+GV ++E +SP     +IRM+L  A
Sbjct:   55 NQTWKLVSRTADMNVIGSKWVYKAKLKADGTLERLKARLVAKGFSQVDGVDFSETFSPVVKPATIRMVLTIA 126          
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A151ST36_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151ST36_CAJCA)

HSP 1 Score: 60.1 bits (144), Expect = 3.850e-10
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    7 ENCVYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
            +N V+  V  LKD+ +IGTK +YK K+ +   V + K RLVA+G+   EG+ +TE ++P     +IR+LLA  A
Sbjct:   10 KNDVWKLVPMLKDRTIIGTKWVYKNKLDESRNVVRNKARLVAKGYSWQEGIDFTETFAPVARIEAIRILLAFVA 83          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK8.150e-1553.52Integrase catalytic domain-containing protein (Fra... [more]
A0A1C7MSU6_GRIFR6.320e-1349.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A235B279_9BACL2.490e-1244.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6NNP3_9APHY7.460e-1246.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SUY4_PYCCI1.980e-1147.14Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A0J7K7I2_LASNI3.570e-1142.11Retrovirus-related pol polyprotein from transposon... [more]
A0A6I9TKF2_SESIN1.270e-1050.00uncharacterized protein LOC105164425 n=1 Tax=Sesam... [more]
A0A1J3CJ10_NOCCA2.330e-1055.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I4GRT0_JUGRE3.630e-1044.44uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A151ST36_CAJCA3.850e-1041.89Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6810contigF-serratus_M_contig6810:18757..18993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score66.2
Seed ortholog evalue7.6e-09
Seed eggNOG ortholog2711.XP_006493639.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.LRR receptor-like serine threonine-protein kinase
EggNOG OGs37Y8N@33090,3GXD3@35493,COG2801@1,KOG0017@2759
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size237
Cds size237
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932087.6860309-CDS-F-serratus_M_contig6810:18756..189931622932087.6860309-CDS-F-serratus_M_contig6810:18756..18993Fucus serratus maleCDSF-serratus_M_contig6810 18757..18993 -
1690964140.939913-CDS-F-serratus_M_contig6810:18756..189931690964140.939913-CDS-F-serratus_M_contig6810:18756..18993Fucus serratus maleCDSF-serratus_M_contig6810 18757..18993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6810.17875.1prot_F-serratus_M_contig6810.17875.1Fucus serratus malepolypeptideF-serratus_M_contig6810 18757..18993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6810.17875.1

>prot_F-serratus_M_contig6810.17875.1 ID=prot_F-serratus_M_contig6810.17875.1|Name=mRNA_F-serratus_M_contig6810.17875.1|organism=Fucus serratus male|type=polypeptide|length=79bp
MVENCVYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQV
EGVHYTEKYSPTPSAVSIRMLLATAASG*
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mRNA from alignment at F-serratus_M_contig6810:18757..18993-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6810.17875.1 ID=mRNA_F-serratus_M_contig6810.17875.1|Name=mRNA_F-serratus_M_contig6810.17875.1|organism=Fucus serratus male|type=mRNA|length=237bp|location=Sequence derived from alignment at F-serratus_M_contig6810:18757..18993- (Fucus serratus male)
ATGGTCGAGAACTGCGTTTATAATCAGGTGGCTCGGCTGAAAGATAAGCT CGTGATCGGCACGAAAATGTTGTACAAGCAAAAAATCGGGCAGGACGACA AGGTCGAGAAGTACAAGTGTCGGCTGGTCGCTCAAGGGTTCTGGCAGGTG GAAGGTGTGCACTACACGGAAAAGTACTCGCCCACGCCATCAGCCGTGTC AATCCGTATGCTTTTGGCGACGGCAGCTTCAGGATAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6810:18757..18993-

>mRNA_F-serratus_M_contig6810.17875.1 ID=mRNA_F-serratus_M_contig6810.17875.1|Name=mRNA_F-serratus_M_contig6810.17875.1|organism=Fucus serratus male|type=CDS|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig6810:18757..18993- (Fucus serratus male)
ATGGTCGAGAACTGCGTTTATAATCAGGTGGCTCGGCTGAAAGATAAGCT
CGTGATCGGCACGAAAATGTTGTACAAGCAAAAAATCGGGCAGGACGACA
AGGTCGAGAAGTACAAGTGTCGGCTGGTCGCTCAAGGGTTCTGGCAGGTG
GAAGGTGTGCACTACACGGAAAAGTACTCGCCCACGCCATCAGCCGTGTC
AATCCGTATGCTTTTGGCGACGGCAGCTTCAGGATAGATGGTCGAGAACT
GCGTTTATAATCAGGTGGCTCGGCTGAAAGATAAGCTCGTGATCGGCACG
AAAATGTTGTACAAGCAAAAAATCGGGCAGGACGACAAGGTCGAGAAGTA
CAAGTGTCGGCTGGTCGCTCAAGGGTTCTGGCAGGTGGAAGGTGTGCACT
ACACGGAAAAGTACTCGCCCACGCCATCAGCCGTGTCAATCCGTATGCTT
TTGGCGACGGCAGCTTCAGGATAG
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