mRNA_F-serratus_M_contig681.17871.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig681.17871.1
Unique NamemRNA_F-serratus_M_contig681.17871.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig681.17871.1 vs. uniprot
Match: D7FIS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS2_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 3.670e-19
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:  175 PWEPLSSADYAVLTAVVFCQTVALAMCLHLLWCRKWPPYITKSVGLVVVSTCSGVLWGATSFISYGYVRRKEG 393
            PWEPL   D+ VL  V   Q VAL +C HL+  RKWPPY+TK+V +V++ST +G+LW AT  I  G+VRR+ G
Sbjct:    6 PWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFVRRRAG 78
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BLAST of mRNA_F-serratus_M_contig681.17871.1 vs. uniprot
Match: D7FIR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR8_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 6.040e-19
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:  178 WEPLSSADYAVLTAVVFCQTVALAMCLHLLWCRKWPPYITKSVGLVVVSTCSGVLWGATSFISYGYVRRKEG 393
            WEPLS+ D+ VL  V   Q VAL +C HLL  RKWPPY+TK+V +V++ST SGVLW  +  IS GY+RR+ G
Sbjct:    8 WEPLSTPDFWVLGFVATFQAVALLVCAHLLRWRKWPPYVTKNVDVVIISTFSGVLWNVSMIISSGYIRREAG 79
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BLAST of mRNA_F-serratus_M_contig681.17871.1 vs. uniprot
Match: D7FTZ7_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 9.330e-14
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  175 PWEPLSSADYAVLTAVVFCQTVALAMCLHLLWCRKWPPYITKSVGLVVVSTCSGVLWGATSFISYGYVRRKEG 393
            PWEPL+  DY +L  V   Q  AL +C+HL+  RKWPPY+TK+V +V++ T +G  W   S +  G + R EG
Sbjct:    6 PWEPLTFVDYVMLGMVGAFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTLAGFAWTFASALETGIIERSEG 78
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BLAST of mRNA_F-serratus_M_contig681.17871.1 vs. uniprot
Match: D7FTZ5_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.800e-13
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:  175 PWEPLSSADYAVLTAVVFCQTVALAMCLHLLWCRKWPPYITKSVGLVVVSTCSGVLWGATSFISYGYVRRKE 390
            PWEPL+  DY +L  V   Q  AL +C+HL+  RKWPPY+TK+V +V++ T +G  W   + + +G ++R E
Sbjct:    6 PWEPLAFVDYLMLGIVCTFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTFAGFAWTFAAAVGHGLIQRSE 77
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BLAST of mRNA_F-serratus_M_contig681.17871.1 vs. uniprot
Match: D7FU01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU01_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 3.790e-10
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  175 PWEPLSSADYAVLTAVVFCQTVALAMCLHLLWCRKWPPYITKSVGLVVVST-CSGV 339
            PWEPL+ ADY +L  V   Q  AL +C+HL   RKWPPY+TK+V +V++   CS V
Sbjct:    6 PWEPLTMADYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVIIMVECSEV 61
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BLAST of mRNA_F-serratus_M_contig681.17871.1 vs. uniprot
Match: A0A6H5KAT5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.020e-9
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  178 WEPLSSADYAVLTAVVFCQTVALAMCLHLLWCRKWPPYITKSVGLVVVS 324
            WEPLS+ D+ VL  V   QTVAL +C HLL  RKWPPY+TK+V +V++S
Sbjct:    7 WEPLSTPDFWVLGFVATFQTVALLVCAHLLRWRKWPPYVTKNVDVVIIS 55
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BLAST of mRNA_F-serratus_M_contig681.17871.1 vs. uniprot
Match: D7FTZ6_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ6_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.070e-7
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:  232 QTVALAMCLHLLWCRKWPPYITKSVGLVVVSTCSGVLWGATSFISYGYVRRKEG 393
            Q  AL +C+HL+  RKWPPY+TK+V +V++ T +G  W   S +  G + R EG
Sbjct:    9 QAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTLAGFAWTFASALQSGLIPRNEG 62
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BLAST of mRNA_F-serratus_M_contig681.17871.1 vs. uniprot
Match: A0A6H5JMI3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI3_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.770e-7
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:  178 WEPLSSADYAVLTAVVFCQT--VALAMCLHLLWCRKWPPYITKSVGLVVVSTCSGVLWGATSFISYGY 375
            W+PLS  DYA+L  V   Q   + LA+ +HL+ CR WPPY+ K+V LV V+  +G +  +   IS+G+
Sbjct:    2 WDPLSGPDYALLALVGLHQASVLVLAVVVHLISCRDWPPYLVKNVPLVCVTGVAGFIHLSGVVISFGF 69
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig681.17871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FIS2_ECTSI3.670e-1953.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FIR8_ECTSI6.040e-1956.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTZ7_ECTSI9.330e-1445.21Similar to regulator of G-protein signaling 16 n=1... [more]
D7FTZ5_ECTSI1.800e-1343.06Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
D7FU01_ECTSI3.790e-1051.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAT5_9PHAE4.020e-959.18RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTZ6_ECTSI1.070e-744.44Similar to regulator of G-protein signaling 16 n=1... [more]
A0A6H5JMI3_9PHAE3.770e-742.65RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig681contigF-serratus_M_contig681:227980..230718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue3.2e-12
Seed eggNOG ortholog2880.D7FTZ7
Preferred nameRGS1
KEGG koko:K16449
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons3
Model size393
Cds size393
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig681.17871.1prot_F-serratus_M_contig681.17871.1Fucus serratus malepolypeptideF-serratus_M_contig681 227980..230718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932086.7833648-CDS-F-serratus_M_contig681:227979..2280481622932086.7833648-CDS-F-serratus_M_contig681:227979..228048Fucus serratus maleCDSF-serratus_M_contig681 227980..228048 -
1690964140.5096636-CDS-F-serratus_M_contig681:227979..2280481690964140.5096636-CDS-F-serratus_M_contig681:227979..228048Fucus serratus maleCDSF-serratus_M_contig681 227980..228048 -
1622932086.8046556-CDS-F-serratus_M_contig681:228702..2289481622932086.8046556-CDS-F-serratus_M_contig681:228702..228948Fucus serratus maleCDSF-serratus_M_contig681 228703..228948 -
1690964140.5253143-CDS-F-serratus_M_contig681:228702..2289481690964140.5253143-CDS-F-serratus_M_contig681:228702..228948Fucus serratus maleCDSF-serratus_M_contig681 228703..228948 -
1622932086.8195884-CDS-F-serratus_M_contig681:230640..2307181622932086.8195884-CDS-F-serratus_M_contig681:230640..230718Fucus serratus maleCDSF-serratus_M_contig681 230641..230718 -
1690964140.5347517-CDS-F-serratus_M_contig681:230640..2307181690964140.5347517-CDS-F-serratus_M_contig681:230640..230718Fucus serratus maleCDSF-serratus_M_contig681 230641..230718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig681.17871.1

>prot_F-serratus_M_contig681.17871.1 ID=prot_F-serratus_M_contig681.17871.1|Name=mRNA_F-serratus_M_contig681.17871.1|organism=Fucus serratus male|type=polypeptide|length=131bp
FFSDGIGTGRHLAKAATECRTARQQRVPSPRSSLTPPGVQQRQRMADAED
ATEDDASTPWEPLSSADYAVLTAVVFCQTVALAMCLHLLWCRKWPPYITK
SVGLVVVSTCSGVLWGATSFISYGYVRRKEG
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mRNA from alignment at F-serratus_M_contig681:227980..230718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig681.17871.1 ID=mRNA_F-serratus_M_contig681.17871.1|Name=mRNA_F-serratus_M_contig681.17871.1|organism=Fucus serratus male|type=mRNA|length=2739bp|location=Sequence derived from alignment at F-serratus_M_contig681:227980..230718- (Fucus serratus male)
TTTTTCTCGGACGGAATAGGCACAGGCAGGCATCTAGCAAAGGCCGCAAC
CGAGTGTCGGACAGCGAGGCAACAACGGGTGACCGCCACATGGTGTTGAT
CCATGTCATGTGCGATGAGTCTAAGTCAAACAGAGATCCGACGCGGTGTT
CGAACTTGACCCTAGGAGAGGCCTATTTTTCAAAGTTGAACATCCCAAAC
CTCTAGAGAAGAACTGGACAACAGCGAGCCTGTTCCAAATGTGTGGAAAT
TTTATTTTACAGAGAGGTTTGCGCAGCCCGTTATTGCCGATATCGTGGAA
AATTTCTAAAGTTTGGGATTTTATTCGGCTCGTTTAGACCGACCCTTAGA
GAGCAAAAACCAGGATTCGCGACAACAACAGCAGACAAGCCGGATTCCAG
GAGTTGCGACGAGCGCAGGCAGGCTGGATGCGAGACAAATTTGACTGTTG
TTGCTACGATACTAGAGTAACGATGAGGTGGTATCCCAAACACGCCCATT
TTACTGCTCGCGGTTTGCTATTAATAATAATTCCGCGTTTCGTACGCTGT
GCAGGGTCAGAGCGAAATGAGCAACATACACAACAGCATATGACTGACAC
CCGCAATTATATACTGAGGTGGTTACTAATAGCATATAGCACGTAATATG
GAGACGGCGTAGAGAACCCCACACGAAACTGCGTGGTGTGTGGCTACTCG
ATCGCTCGAGTGATTAGAATCGTCATTTGTACGGAGGAGAATGCGATGAT
CAATTGTACCTGAGAAGATTTTCGTGGTTAAATATAGTAATATGAATAGT
GCCTTGAGTCAACGTGCAATCTGCATGTCAATCCAAGGGCGTCCAATTGA
CTCGACTTGAAATTCACACGCTGGGCGCCTTGTCCTGGTCCAGATTCTGC
TTGCGGATCAGACTATGGACAATGTATTGGACTATTATACTAGTATAGAG
TATGCGATAGCCCGAAAGGGAGACAAAACTACAAACAAACACGGATGTTT
GACAATTAACAGCTCTTCTACTGCATAGGGCTTCACTCTCACCTTTCCCC
CCTCTCCACCCACAAAAGAAAAAGCCCCAACTTCTCGTGGACTGCAGGGT
GGTTTGAAGGGAGTACGTCGGCGATAGTAAGCACGCACTACACGTCAACG
ACTCCCGTCAATTTCCAATGCCCAGCGGCTGCCTCATCTTATTCCTCGCT
TCCTGCTACGAAATATATTATAGGGCTAGTAATAGCAAGCAGTAACTGCA
AATGCTTTCGACGGACACACTACATGGTCTAAAATAACTCCCTGACTGAG
TGCACCAGCACTTGTTAGGAAGTGGTGGGGGCTTCCTTAGGCGATATTTC
AGATCCTTGATGCCCAAGCTATGTAGCGGGGGTTGTCAGATGAAGTTGCA
TCCGAGAGGGATCGGCAAAAACGCGTCACCAGTACAACTCAAAGGCAACA
TAACATATAGTTTGCCATGAATTTGAGACAAGGAAAATACTTCACGAGTT
GTGGTACAAGCTTTACCCTCGTCACAAGACTATCCTTTACACAGTATAAT
AATGTGTTTTCCCTCGAAGTTAAAAGAAAAAGCACGCGGTGGCGGCAATT
CCCATGATCATAAGAGGTCAGATGCGACGATGGACTAGATTTATAAGGAA
ATATAACGGTGCTACTACGACGAAATCGTGCTGCTTACTGGCTAGGCCTC
GATTCTGCGCGTTGGCTCTCGGTATTTGAATCGCAATTGCGGCGGCCGTA
CCCGCTGTGTCTTTTGATAGGTCCCCTCACCCCGAAGTTCCTTAACGCCG
CCGGGCGTACAACAACGTCAAAGGATGGCAGACGCCGAGGACGCCACAGA
GGATGACGCCAGTACGCCATGGGAGCCACTGTCGTCGGCTGATTATGCAG
TCCTCACCGCCGTAGTTTTCTGTCAGACAGTGGCGCTGGCGATGTGCTTG
CACCTCCTGTGGTGCAGAAAGTGGCCACCGTACATCACCAAGAGCGTCGG
ACTAGTGGTCGTATCGGTGAGTACTTTTGCAGTTGTTACGTTTCACATCG
TTGTTGACGAACCTGGACACCCGCTGACATATTCTTTTGTTTTGTGAGGG
GCTCAACGGTTGGGGAGGGCGGGGATACGACGACTTTGTCCCCAGGGAGG
TCGCCAAAACAGCCCCTTCCGGGGATAGGACTACATGATCCCCTACATGA
TCGGCACGCTTGCCCCGAATTGATCGTATTTGATCGGAGGGTTGGTCAAA
TATGTCCCCGGTAGGGGCTATTTTCGTGCCGTTCCCTCCCAAAACGGAGA
TACATTTGTTGCATCCCCGCGCCCCGCCTTCAATCGTTGAACGGGTCTTG
TTTTATTTACTCGTTCATTGAACTCCAACCAACTCAAAATACGACGGGTA
ACTGACGAGGCACATGTCCCAATGAAAACGAATGTGTCGTAGGTTGTGGA
TCGTAGGTCCAGTAGTTGCTATTGTCCCGTACGGACACACTCGCCCTTAT
TTTAACGCCACGTTAGATTATGTGCCAAGTTGCATTTCAGGCCTAGGCCC
ATCATGAAACCACAGTCACCCGTATTCTCCCCGTGGTATCCCCCGCCTGC
TCGCCTATCCCTCTGTTTGGGGGCGGATTTGGGGGCCCCGCGGGGAACGG
GTTCGCTCAAACCCGAGCAGACCTGTTCAGGCGTGTTGTGGGGGGCTACG
TCGTTTATCAGTTACGGCTACGTTCGGAGGAAGGAAGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig681:227980..230718-

>mRNA_F-serratus_M_contig681.17871.1 ID=mRNA_F-serratus_M_contig681.17871.1|Name=mRNA_F-serratus_M_contig681.17871.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig681:227980..230718- (Fucus serratus male)
TTTTTCTCGGACGGAATAGGCACAGGCAGGCATCTAGCAAAGGCCGCAAC
CGAGTGTCGGACAGCGAGGCAACAACGGTTTTTCTCGGACGGAATAGGCA
CAGGCAGGCATCTAGCAAAGGCCGCAACCGAGTGTCGGACAGCGAGGCAA
CAACGGGTCCCCTCACCCCGAAGTTCCTTAACGCCGCCGGGCGTACAACA
ACGTCAAAGGATGGCAGACGCCGAGGACGCCACAGAGGATGACGCCAGTA
CGCCATGGGAGCCACTGTCGTCGGCTGATTATGCAGTCCTCACCGCCGTA
GTTTTCTGTCAGACAGTGGCGCTGGCGATGTGCTTGCACCTCCTGTGGTG
CAGAAAGTGGCCACCGTACATCACCAAGAGCGTCGGACTAGTGGTCGTAT
CGGTCCCCTCACCCCGAAGTTCCTTAACGCCGCCGGGCGTACAACAACGT
CAAAGGATGGCAGACGCCGAGGACGCCACAGAGGATGACGCCAGTACGCC
ATGGGAGCCACTGTCGTCGGCTGATTATGCAGTCCTCACCGCCGTAGTTT
TCTGTCAGACAGTGGCGCTGGCGATGTGCTTGCACCTCCTGTGGTGCAGA
AAGTGGCCACCGTACATCACCAAGAGCGTCGGACTAGTGGTCGTATCGAC
CTGTTCAGGCGTGTTGTGGGGGGCTACGTCGTTTATCAGTTACGGCTACG
TTCGGAGGAAGGAAGGAACCTGTTCAGGCGTGTTGTGGGGGGCTACGTCG
TTTATCAGTTACGGCTACGTTCGGAGGAAGGAAGGA
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