mRNA_F-serratus_M_contig680.17854.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig680.17854.1 vs. uniprot
Match: D8LLI2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI2_ECTSI) HSP 1 Score: 409 bits (1050), Expect = 9.350e-128 Identity = 281/693 (40.55%), Postives = 387/693 (55.84%), Query Frame = 2
Query: 356 MFDIEQLKGALSQLGVPISRSEAEEVMEYYSKRAPASAGGQK--FFHAHLLQDAVRGSPSFLEVDQGITQRLLGSARSEASLLGLPKSTREETLVVKAFRNKLREEVEKRVREMGGTPYQVLRDAFFKWDRESSGTVTSEQLRGALRSLKMSVSSTQAKEVEKFYAKKTSPSKECDYMALVRDVTGSDRSPLVHNIHKKGKDPTPNLGQAAATMAGEEGSGNSSGRSSSRPEDYNLSFSGRPHLKPRNRLVERFKLRLRNALEKRVRRKGGAIYSIIRQNFLQLDADASEKIDLVELKRASNRMGVSITEEEAATIVMYYDLDGSGEMSYDLLCREISPVVNPVLPFVEEVDVPKDAKHEILEVPRVVSRAVERVRAGVIDVGRRMEGPSSSKLLLPIFL-RDVLMGTCIRFDWDDTGVLDPDKLEQVWRELKITLRRSEVAALVDWLGRGATHTVRISDLCNAVFGEGGTTTSRSSTASPHRQNHPLLPP-----------PRPRDLQAQRSAALAMRKSISATFRSPAVSAAPPGGYQQYPLLKQGQRNGHGGPLRKRKCAASPPLESKKVWNNRQKLPPEASESRRRRVVPSLAAATRPEGPGDGRGERRYESVGVDSDGGCGGGVSNGAALPADGGDVVATEKMMIERRLKELQQEKVNLLRRRKRMKQEACTSPTSFRRCWGE-GRGN 2389
M E L GALSQLGV ++R E EE M +YS + + + HA LL+DA G+PS E Q IT+RL+GSARS+ SLLG +S ++E+ +++AFR KL++ ++KRV+ GG+P ++L+ F WD E G + ++QLRGALR+L M +S+TQAKE+ +FYAK P+ CD M LV DV G D+ V+ + K+ D T +A +A + GNS+ S R +L F+ RPH KP NR+V+RFK+RLR+ALE+ ++ KGG ++IIR+ FL DADAS K+D EL A RMGV TE+EA +V YYDLDG+GEMSY+LLC+EI + +P+L ++EEVDV + E P VV AVER+R GV +R G +S+ LP+ RD+L GT +RFD D+G++ D+L QVWRELKI LR SE A+V WL R + SDLC+AVFG SRS LL P P+P +QA RSAALAM + S + + S A Y PL + + R+ A+ + + WN A+++ +RV P G G + + G G+ V EK IE+RLKEL++EK LLR + M+ CWGE GRG+
Sbjct: 1 MISKEHLVGALSQLGVSVTRMELEETMNHYSTQDASRVENARCQIPHADLLRDAAAGAPSLFECGQSITERLMGSARSQGSLLGKSRSAKDESPMIRAFRTKLQQVIDKRVKYAGGSPSRILKSLFLNWDTERIGALDTKQLRGALRTLNMRLSATQAKELTRFYAKNGDPAAGCDCMQLVDDVCGYDQGLFVNQLPKEQTDKTGGWDGSAPVVASDGNPGNSTSEGSDR-NHASLQFTARPHEKPSNRVVDRFKMRLRDALEQTIKTKGGVSHAIIREAFLDWDADASGKLDPRELVGALKRMGVYATEDEANAVVEYYDLDGTGEMSYELLCKEIKTMSHPMLSYIEEVDVLNGLDRTVRE-PAVVKNAVERIRVGVTAAAKRAAGSAST---LPLISPRDLLEGTILRFDHQDSGLVGVDELRQVWRELKICLRTSETKAVVAWLDRSTAKKLHTSDLCDAVFG-----VSRSGHDCNGNSPPGLLAPNNLGERHSKPRPKPHVVQAHRSAALAMGAASSGSSSEDSGSIA----YPPLPLPSK----------KDRREVAAKKFDRRAAWN----WQGPAADAVAQRVDPG----------GKNEGSNKPVAGGXXX-------XXXXXXXXXXSGEAVVAEKARIEKRLKELRREKALLLREKNGME------------CWGERGRGS 636
BLAST of mRNA_F-serratus_M_contig680.17854.1 vs. uniprot
Match: A0A836CKG4_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKG4_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.110e-33 Identity = 148/565 (26.19%), Postives = 232/565 (41.06%), Query Frame = 2
Query: 95 NRAQHGLEGGQSRLKWQLYRDWCRKEQREHAHFERLEKGRRQKP-SRVVEIILRRILYRADRKAKQQGGYASSTLGRIFLRWDCHNSGMFDIEQLKGALSQLGVPISRSEAEEVMEYYSKRAPASAGGQKFFHAHLLQDAVRGSPSFLEVDQGITQRLLGSARSEASLLGLPKSTREETLVVKAFRNKLREEVEKRVREMGGTPYQVLRDAFFKWDRESSGTVTSEQLRGALRSLKMSVSSTQAKEVEKFYAKKTSPSKE-------CD-----------------YMALVRDVTGSDRSPLVHNIHKKGKDPTPNLGQAAATMAGEEGSGNSSGRSSSRPEDYN-LSFSGRPHLKPRNRLVERFKLRLRNALEKRVRRKGGAIYSIIRQNFLQLDADASEKIDLVELKRASNRMGVSITEEEAATIVMYYDLDGSGEMSYDLLCREISPVVNPVLPFVEEVDVPKDAKHEILEVPRVVSRAVERVRAGVIDVGRRMEGPSSSKLLLPIFLRDVLMGTCIRFDWDDTGVLDPDKLEQVWRELKITLRRSEVAALVDWLGRGATHT 1711
NRA LE Q +W +R+ K++R A + R G +KP + VE+ L+R+ + K++GG A S + L+WD NSG +E+L GA +GVPI+R EAEEV+ Y R +T+++ AFR KL++ + +R+RE GG+ +L+ F KW+ S +++ +RGALR L M+++ +QA EV +Y +++ ++ CD + + D L+H+I K + Q EG + R E N ++F+ RP KPRNR VE+FKLRLR+ LE + +GG + + EM Y LLCREI + + +L +VE+ DV + H + E P ++ V G ++ I RD+ +GTC+RFD TG++D L +V EL + L+ +E + W G T T
Sbjct: 19 NRACFRLEQTQPGAQWMAFREQRHKDERMAARYARAHAGLDKKPITPTVELFLKRLRLVLHKLMKKKGGSAFSIIRNACLKWDLDNSGAIAVEELLGACRSIGVPITRQEAEEVVYCYDAR--------------------------------------------------------DTVII-AFRAKLKDLLARRIREQGGSEMGILKALFLKWNTSRSFATSADDVRGALRKLGMNLTRSQADEVVGYYTPRSAAAQARMCASAYCDNGXXXXXXXXXXXXXXXXXXXLDAASYFDFRELIHDIVKGERSILAFPSQEEMEAVQREGLVQETHR-----ECLNDMAFTARPVRKPRNREVEKFKLRLRDRLELIIEHRGG--------------------------------------------------IHHAREMDYTLLCREIEGMSHDILSYVEDCDVLRGLDHAVREPP--LNAEVRAYVRGGVERAXXXXXXXXXXAGAAIAPRDLFLGTCLRFDAGSTGMVDGAGLRRVCSELGVALKLAEADKMCMWYELGLTLT 469
BLAST of mRNA_F-serratus_M_contig680.17854.1 vs. uniprot
Match: F0YH50_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH50_AURAN) HSP 1 Score: 103 bits (256), Expect = 1.010e-18 Identity = 75/267 (28.09%), Postives = 128/267 (47.94%), Query Frame = 2
Query: 233 VVEIILRRILYRADRKAKQQGGYASSTLGRIFLRWDCHNSGMFDIEQLKGALSQLGVPISRSEAEEVMEYYSKRAPASAGGQKFFHAHLLQDAVRGSPSFLEV--DQGITQRLLGSARSEASLLGLPKSTREETLVVKA-----------------FRNKLREEVEKRVREMGGTPYQVLRDAFFKWDRESSGTVTSEQLRGALRSLKMSVSSTQAKEVEKFYAKKTSPSK----ECDYMALVRDVTGSDRSPLVHNIHKKGKDPTP 964
+V ++++ + K+ G Y + R FL WD SG D +L GAL+QLGV +S SEA +++ Y AS G + A L++D G P F+E D + R A +++ P+ E+ L++++ F+ KLR VE R+ GGT +LR+AF WD ++SG + + GA+ + M +S A+++ ++Y +K + + E YM LV ++ + + H + K+ P P
Sbjct: 530 IVRRFIKKLRAKLLTSIKKNGEYERILIRRAFLNWDADASGQLDARELVGALAQLGVTLSESEASQIVAAYD----ASNQGAMRYQA-LVEDVCEGVPHFIESAEDPDVETR----ANLKSTTAPTPEEEHEDELLLESLFTCRPYEKTQNALAEEFKVKLRYAVEARILSQGGTVQSILREAFLFWDSDASGELNVREFMGAMNRVGMDMSEMHARQIVRYYDRKGNRGRFGDGEIHYMDLVDEIAKAVPHFISHPVPKRAAGPPP 787
BLAST of mRNA_F-serratus_M_contig680.17854.1 vs. uniprot
Match: A0A7S2BI80_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI80_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 4.190e-7 Identity = 55/199 (27.64%), Postives = 92/199 (46.23%), Query Frame = 2
Query: 1118 RLRNALEKRVRRKGGAIYSIIRQNFLQLDADASEKIDLVELKRASNRMGVSITEEEAATIVMYYDLDGSGEMSYDLLCREISPVVNPVLPFVEEVDVPKDAK-HEILEVPR--------VVSRAVERVRAGVIDVGRRMEGPSSSKLLLPIFLRDVLMGTCIRFDWDDTGVLDPDKLEQVWRELKITLRRSEVAALVDW 1687
+L+ L +R++ GG S++RQ FL DAD S ++ E A +G I++ EA IV YYDL+G GEM+Y L ++S L E+ A H P +S ++++R ++ RR G + L+ FL +D D +G + +L+ +L + + +E A +VD+
Sbjct: 5 KLQRFLRRRMKESGGTEGSVLRQAFLNWDADCSGELSSTEFMGALRSLGCLISQREAQIIVDYYDLEGDGEMTYPPLVEDVSRGSRHFLQHPEKESARTSAPDHSDSARPHRKNPHGDDFMSAFLQKLRKILMKHMRRY-GENEKILVRRAFLN---------WDADSSGCISAAELKGAMNQLGMFINNTEAARIVDF 193 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig680.17854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig680.17854.1 >prot_F-serratus_M_contig680.17854.1 ID=prot_F-serratus_M_contig680.17854.1|Name=mRNA_F-serratus_M_contig680.17854.1|organism=Fucus serratus male|type=polypeptide|length=785bp MGDKTVNLSPKKRRERNRAQHGLEGGQSRLKWQLYRDWCRKEQREHAHFEback to top mRNA from alignment at F-serratus_M_contig680:150926..185039+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig680.17854.1 ID=mRNA_F-serratus_M_contig680.17854.1|Name=mRNA_F-serratus_M_contig680.17854.1|organism=Fucus serratus male|type=mRNA|length=34114bp|location=Sequence derived from alignment at F-serratus_M_contig680:150926..185039+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig680:150926..185039+ >mRNA_F-serratus_M_contig680.17854.1 ID=mRNA_F-serratus_M_contig680.17854.1|Name=mRNA_F-serratus_M_contig680.17854.1|organism=Fucus serratus male|type=CDS|length=4710bp|location=Sequence derived from alignment at F-serratus_M_contig680:150926..185039+ (Fucus serratus male)back to top |