mRNA_F-serratus_M_contig68.17845.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig68.17845.1
Unique NamemRNA_F-serratus_M_contig68.17845.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig68.17845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig68contigF-serratus_M_contig68:934111..940682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size518
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig68.17845.1prot_F-serratus_M_contig68.17845.1Fucus serratus malepolypeptideF-serratus_M_contig68 934287..940682 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932074.893465-UTR-F-serratus_M_contig68:934110..9342861622932074.893465-UTR-F-serratus_M_contig68:934110..934286Fucus serratus maleUTRF-serratus_M_contig68 934111..934286 +
1690964134.0834987-UTR-F-serratus_M_contig68:934110..9342861690964134.0834987-UTR-F-serratus_M_contig68:934110..934286Fucus serratus maleUTRF-serratus_M_contig68 934111..934286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932074.918461-CDS-F-serratus_M_contig68:934286..9344741622932074.918461-CDS-F-serratus_M_contig68:934286..934474Fucus serratus maleCDSF-serratus_M_contig68 934287..934474 +
1690964134.0958827-CDS-F-serratus_M_contig68:934286..9344741690964134.0958827-CDS-F-serratus_M_contig68:934286..934474Fucus serratus maleCDSF-serratus_M_contig68 934287..934474 +
1622932074.9454646-CDS-F-serratus_M_contig68:940528..9406821622932074.9454646-CDS-F-serratus_M_contig68:940528..940682Fucus serratus maleCDSF-serratus_M_contig68 940529..940682 +
1690964134.1059039-CDS-F-serratus_M_contig68:940528..9406821690964134.1059039-CDS-F-serratus_M_contig68:940528..940682Fucus serratus maleCDSF-serratus_M_contig68 940529..940682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig68.17845.1

>prot_F-serratus_M_contig68.17845.1 ID=prot_F-serratus_M_contig68.17845.1|Name=mRNA_F-serratus_M_contig68.17845.1|organism=Fucus serratus male|type=polypeptide|length=114bp
MAVLLYANRELTYTPCLACPAARTLRAGGEARNALLLRRRFRSAPCRSSF
CFRPDGTHGIKCRFSYVNTEDSYVYTKVRPLMPNLPLSSLLLSAYSVFPV
PLAPFLLPFSGSL*
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mRNA from alignment at F-serratus_M_contig68:934111..940682+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig68.17845.1 ID=mRNA_F-serratus_M_contig68.17845.1|Name=mRNA_F-serratus_M_contig68.17845.1|organism=Fucus serratus male|type=mRNA|length=6572bp|location=Sequence derived from alignment at F-serratus_M_contig68:934111..940682+ (Fucus serratus male)
TACTCTTGTTACTCCAGAATGTTGAACGGTACCTCTCCGTTGTCGAACGG
CACCTTGCCTTCGTTTTCCCGCTCTTTTCGCCTTCGTCCTTTCAAGTATC
ATACGGAGGACTTTGTACTACGAATTTTCCTCCTACTACCTTAGTCTATA
TATGATAGCATTACTGTACCGACCCTATGGCCGTGCTACTTTATGCAAAC
CGAGAGCTGACCTATACTCCTTGTCTTGCTTGTCCCGCCGCGAGGACCCT
TCGGGCGGGAGGAGAAGCACGCAATGCTTTACTACTACGCCGGAGGTTTC
GGTCAGCGCCTTGTCGCAGCTCCTTCTGCTTTCGGCCGGACGGGACTCAC
GGGATAAAATGCAGGTATAACTGCGCGCGGATTTCGCAACCCCCCGCCGC
CCCGAATCGCTCGGCATTACGACCCCCTGCGACCTAGATTTTCGCGCCCC
GGCGTTTGCGCTCCCTCCAACCTTGACAAGACTTGGGTTTTCCACATCTG
ATGTACATCTCTTACGATGTTTAATACATAGTACAAGTCACGCTGCAAGT
ACAAGAGCGTCGACCTACCGCCCCCGCGCGGATTTTGTCGCGAAAATACA
ACACGCGCGGTGTTCTGAACGTGCAATCGGCAATTCCCTCCTACCCTGAC
AGGACTACTGGTATACAGCTGTTAACACGTTCAATGCGTCACGCATTGTC
TAATTCTATCTGCACGTCGCCAACCCCAATAGTAACGTGACCATGGCCTC
ACCCCCTTGAGTCTCTTGATGGCCCATTAGCAAAAAAAAAATAAAAAAAA
ATTAGCGGCCAGGGATAGACTCTACGTTGCCTACCGAAAGATGAACCATC
TTTCCAAATTTAAAGCGACCCCTTGTCCCCTCCCTGCGACGATGGCCATT
GAATACCCGAGCTCCCATACTCCCTTGACTGTAACAGATCCACTTACTTC
CATCGCCCCGCTGTAGCAAAAAAAAAAACAAGTTAGCGGCCAGGGATAGA
CTCTACGTTGCCTACCGAAAGATGAACCATCTTTCCAAATTTAAAGCGAC
CCCTTGTCCCCCCCTGCGACGATGGCCATTGAACCAGTTAAAATCCGGGC
GGCTCAACAGTATCCAACGTTGATGCCGACCCTGTTTCCGGGCGACTTAG
CTACCAGAGAGAAGCCGTATACTTCATTAGCTACGATGTGGACTGCATTT
TCGGGTTTGAACCACTTCTGTTCCGCAGGCCTCGGGCCCGATTCCTACTC
CGACCATAACCGTTCCAGCCGCCTCTGCCGCTGGATCGCAACGTAACACC
GCTCGCCTTAGATGACCCTCACCTACAGTGTCCAATGTAGATCATGTACA
CTCGCGCAGGAACCCCCCCCTTCCGCGTCGATTATGGGCTCTGGCCCCTC
GATGCTCGTGATTACGCGATAGTCTGCACTGTGACGAATCAAGTACGTGT
CCTTGTGGATGCCCCTCTTCACAGACGACGCTCGTCGCCAGGCGTGCCCT
CAATATAGCGGTCGCTGTTGCAATTGTGGATCATCCGAACATAGCCCCCG
ATGATGTCCTGCCCCCTTCACGCACGCTACAAACGTCGCCATATCCCGAC
TTGCCCCACAGCAGAGGTCCTCCTCCGCACCTTCAAGGTAATAGTTCTGG
ACTCACGCACGCTACAAACGTCGCCGCAATCCCGACTTACCCCCACCGCC
GCGGCCCTCCTCCGCATTTTCAAGGTAATAGTTCCGGACCTCCGCATGCC
CCAAACGTCGCCAAAGTCCCGACTCACCCCACTGCATCCTCGAGCGCTCA
TGGTTCTGGTTTAGCCTCAACGGCTCCCACCATGCGTTATGACCCAGCAC
TCTCGGGTCACACCAACCCGAACGCTCGGCACCCAGGTACGCTCCAGGTG
CAACCTTATACTACCCCGTGACGGCCCGAAGACAGTCCCGAGTCCGTACC
ACTGTCTACGGCACCACTTCACGGATACTCCCGCCCAGTTAATTCCAACT
CATAGGCAACATATACTGGGCCAACATTGCGACCGTGCCATCTCCACCAT
GCCCCCGACCCTGTCGTCTCGGCCAGGACTGACCCCCTGACCGGTACGAT
AATTCAGAGGTGTGGGGAGACACGCACACGAGGTACGGACATACGGGTGC
TCTGTCCTCCTCATGCTCGCCCCTCTCACGGACACGCTGCCCGGGTATGG
GTTCCTCTGGGTTCAGTGCTGGCTTGGTCAGCCTGCCTGCTATCCATGAA
CTCCTCTCGATGACAGCGACGGTGATGCCGTCTCAGACGATCACCATCCG
TACCCAATACAGATTGGTGTGTGCCCCCAATCTCGACAAATTTCGGACCT
TGGGACGCCGACAGCGCAGTTGACAGCCGTTGGACACACACGAGATTGTG
CCGCGACTCGACCTGCCGCGGTCATTCCGCACCATTTTCTGGACGCAGAA
AATGCCTTCCTAAACAGGGAAGAAGACCCCGCCCACTCATTATGGGCCAG
CAGCTCAGAGCCCCCAGCACCAAGACATAATACAAATGTCACAGCTGACT
TGAGCGCTTCTTACGGTACTCCCGCGACATTGGGCCAACACGAGATTGCC
CAGATCGCGATGATTCTGAACGGGCGCGGTCTGTCACAACCCCCCCCGTT
CCCTTCTCGCATGACCTCTGCCCCCCTTTCATCCCACTTGAACACGCATA
TGTCACCTATGACGCATCACTTACATACATCTGTGATGATGTCGTCCTTT
TCTGGTATCCCCCTTCGGCCTCCTCCCAATGGACGCAATCGCCGTTCACC
GTAGACCTCGTCAAATATAATTGCGCGAAACAGTTCATGATGGCCTCGAA
AGCACGCCTACTCGGCGATGATACGGCACTCTCAGCCATCCTTGCTTCAA
ACGACCCCCGAGAGCAAAAATGCCTCGGCCGTCGCGTACGTCACTTTGAC
CATGAGCTATGGCAATCTCTCTGCGACACCATTGTATTACAGGGGACCCT
AGCAAAATTCTCCCAAAACAACGAGATACGCTTCGCCCTCCTCCAAACCG
GCGACCGCCGCCTCGCCGAAGCAAGCCCTCACGATAACTTGTGGGGCATC
GGCCTGAGCGCCTGCGACCCGCGCGCCCCTTCCCCTGATTCCTGGTGCGG
TAAAAATCTGCTCGGTCAGGCCTTAGAGAGCGCCCGCGAAATTCTTCGCT
AAGATTTAAATATACCGCCCGACGACCCCGCACCGGAAACCCCGGTTCTG
CGGGATACTACCGGCGATACCGTTTCGAGGTAGACCCAATTACTCACTTC
CGCCTCGACACGACCCCACTTCCTGCCATTACCCATACGGCTGCGCTCTC
GGCTTTCACCGACTCGGTGCCCGATGACCATGCCCCCGAGGTACTTTGGC
TCAAGAACAGCGCGCCGACGCGCCCCTCCTGCCTGAACAAGGCCCTGATC
TGATCGGTGGCATAGTCACCATGGACGACGCCACCTTCACCATCCTATTA
ACACTCCATAGTGGAGTTTCCGTGACTTCTCGATTTGACTGCCGCGCCGT
AGAACCTCTCCACATAGTTGCAATCCAACAAAAATAAAATAAAATATCAT
CTGTAGGAACTGCAATAATCATATTAGCTTCGGTAAAATAAGCACGAGTA
TCAATATCTAATCCTACAGTAAACATGTGATGAGCCCCCACAATAAATCC
AAGAATGCCAATAGAAAGCATCGCGTATGTAAACACGCGGAAAAAGAGTT
TCAGAAAGCGGATGTTGGATTAGGTAAGGCTAAATCAGATTTTAAAACGG
CTGGTATAGACGTAGTTGCGGCTCAAGCAAATAAAGCTAGTGCAGAAACT
ATTAAGGCTAGGGTTGAGTTATTGGGTAATAATTCATCTTTTAGACACAG
GGTCGCCTCAATCGTTTACCCACCAAGGAGCATTTGACCAGATGGCCGCA
ATAGGTGCCGCTGAAGCGTCCTGCATCCGATTCATAACGCCTAAAACGTG
GAGCGGTTTCGGATCACACAGCTGCTCAGCACGAATAGCCAGGCCAGAAT
GACCGTTCAATTCAACCATGACGGCACGACGTCCGCGTCCCTTGCAGTTG
GACGCGCTTCCACTCCCGCCTCGACCAGACGGCCGGATTTTCGGTGAACT
CACCCTTTCCCCTTGCGACGACGACTTCAGCAGCGCTGTTGCCTATATTC
GCAACGGTAAAACCCTAGACGCTGCTTATAATCTTATCTACAACGGCCCA
GGCGTGATTCTCATCGACTCCCCTCAGATTATCCCGGTGAACTTAGTTGG
CCTCGACGGCTCCCCCGCCTTAACGGGCTATTACATGGTTGACTTATTCC
CCGTCGACGCCGACTCGGCCCCTTCGGAACGCTTCGTTTCCTCGGGTCGA
CAACTGATACCCTTGTCGGGATACCAAGATCTAGAACCGAATGAATCGCC
CCCGCTCAACACGCTCGATCCTCCGGACGAGCCCCCCCCCCCCCCCCCCC
GAACTTCTACACCGACTCGTTCGTCGGATAGAATTTGCGCTGGATGCGGC
TGGCTGGGATCCCGCTGCCCTCGATGCTCTCTCCATCACACTCGTCCCCT
ATGCGAGCGTCTTTTTGTCGTCCAAACTGGACTACGGCGAATGCTCTACA
CGTCATTGCGAAATTCAATCGCGTCCCTACAGACTGAACCCCGTTCTCTC
CAAACAGGTCGATGCCATCTTGGACTCCTATTTCGCCGCTGGCCTCATCC
AGCATTCCACGTCACCATGGTCGAGCCCTCTCGTATGTGTCCCAAAGAAG
GCGGGCGGCATCCGAATAACAGTCAACTATCAAAAACTGAATAAGGTCAC
CGAGATCCCGCCCGGCCTATAACTTCCGTCTCTCAGGATAACGCTTCGCC
GACTTCCGCTCCCGCCTGCCCCTCCCTCCTATCGCCGACGATATCTCTGG
CGCCTCCGCCCTGGCGGATCCAGACGATCTTGGCGTTTATCTCATCCGAG
CGTGCGGTCTCACCATCCCTTCCTGTCCCGTCCCTGGCGTGGGCTTGGGT
GGGCTGGTCCCCTCGCCGGATGCCCCAGTTTTGGGTGGGCTAGCACCCCC
GCCGGATACTCCGGTTTTGGGCGGGCTTCCCCTGACACAGGATGACTCCC
GCACCCACCGTGCCCCGTTACCTTCTCAACCTATAACTGCCCGGCCCTCC
CGCCCCAGCGCACCTCCCGCCCATACGCCCTCTGCAACCTACGCCATTAA
CTCCCGCGACGATACCCCCCGCCCATACGGACGCACACGAAGCCAAACCG
CGATCTCCGCTGGACATACCCCATCACGATCGGATTACCGCAAGGCCGCT
CACAGCGGGTTCGCCGCGCCCGCCGCTTCAGCACCTCCTCCGTCCCGCTC
GTCGCCGCCTCCGCGTTCGGATCGCCTTGGCTACACAACCACTCCGCATG
ATCGCGTCCTACAGATGCCGCCTTCCGCCGACCCCCGGTCGACCTCCCCA
ACTCCGGCGCCCTTGCACCCTACACTACCGGATCCTAACATCCACGCTGC
GGCGGCCCACCTCTCCAACACTCTGTTGGACTACAGCCACCAAGACTGGG
AACAAGCACAACGTGAAGACCCTCGCCGGATGCCCCAGTTTTGGGTGGGC
TACCCCTGACATCAGATGACTTCCGGACACACCGTGCCCCGATACCGCCT
CCTTCTGCGATCCTTCGCCCTCGTCGCCCTTGCGCGACCCTTCCCCAGGC
GTCATACACAATTTAATTAACCCCGCGACGATGCTCCACGGCCCACACGA
CGGACAGACCGCTATCTTGGATGGCCCCATCGCGCCCAGACTATCGCACG
GCCGCCCACAGTGGGTTCGCCGCGTCCGCCGCTGCAGCACCTCCTCCGTT
CCGCACGTCGCCGCCTCCGCGATCGGTCCGCCTAGGCTCCACGACCTCCC
CGGGCCCTCCTGTCCGATAATGGACCCCAATTCTGCGCTCTATTAGCGAC
CACCGTATACAAACTACTCGGGATACATAAGCTCACAACGAGCGCCTATC
ACCCCAGTAGAAATAGAGACGTAGAACGTGTCAACCACACTATGGCTTAA
ATTTTAGCCATGGTCTGTAATGAACACCAGAACGACTGGAACGTCCATTT
CCCCCATGTCGAGTACACCTATCACGACTCTGTTAGCGCCGCCACGGGCC
TCGTCCCTAAAGACGCCCATATTAGACGCCTGCCGCGCCTCGCTCTCACC
GTCTTTGATCGATCATACGGTGGCATACATCAGAACCTCGATCGTGACCA
GTTCGCCCATTGCGACCTTACCCGCGAGCGTCAACAACGAGCATACGAGC
TTGTGCGAGAACACAACTAACCTATCCTTCTTTACCCTCTCGCCCCCTTC
GTTCCCTCGCCTCCGCAGGTTTTCCTATGTCAACACCGAGGACTCTTATG
TCTACACCAAGGTTCGTCCTCTCATGCCTAACCTTCCCCTGTCCTCTCTC
CTCTTGTCAGCGTACTCAGTTTTTCCCGTACCCCTTGCCCCTTTTCTACT
GCCCTTTTCAGGTTCGCTATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig68:934111..940682+

>mRNA_F-serratus_M_contig68.17845.1 ID=mRNA_F-serratus_M_contig68.17845.1|Name=mRNA_F-serratus_M_contig68.17845.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig68:934111..940682+ (Fucus serratus male)
ATGGCCGTGCTACTTTATGCAAACCGAGAGCTGACCTATACTCCTTGTCT
TGCTTGTCCCGCCGCGAGGACCCTTCGGGCGGGAGGAGAAGCACGCAATG
CTTTACTACTACGCCGGAGGTTTCGGTCAGCGCCTTGTCGCAGCTCCTTC
TGCTTTCGGCCGGACGGGACTCACGGGATAAAATGCAGATGGCCGTGCTA
CTTTATGCAAACCGAGAGCTGACCTATACTCCTTGTCTTGCTTGTCCCGC
CGCGAGGACCCTTCGGGCGGGAGGAGAAGCACGCAATGCTTTACTACTAC
GCCGGAGGTTTCGGTCAGCGCCTTGTCGCAGCTCCTTCTGCTTTCGGCCG
GACGGGACTCACGGGATAAAATGCAGGTTTTCCTATGTCAACACCGAGGA
CTCTTATGTCTACACCAAGGTTCGTCCTCTCATGCCTAACCTTCCCCTGT
CCTCTCTCCTCTTGTCAGCGTACTCAGTTTTTCCCGTACCCCTTGCCCCT
TTTCTACTGCCCTTTTCAGGTTCGCTATGAGTTTTCCTATGTCAACACCG
AGGACTCTTATGTCTACACCAAGGTTCGTCCTCTCATGCCTAACCTTCCC
CTGTCCTCTCTCCTCTTGTCAGCGTACTCAGTTTTTCCCGTACCCCTTGC
CCCTTTTCTACTGCCCTTTTCAGGTTCGCTATGA
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