mRNA_F-serratus_M_contig68.17835.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig68.17835.1
Unique NamemRNA_F-serratus_M_contig68.17835.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig68.17835.1 vs. uniprot
Match: D8LJY4_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJY4_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.070e-18
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = 2 
Query:  155 RPSPLMSPLRPRDR----QAFDTDNE-----ARYVVTVRSAKNLKRQGFRGLTNPYCKLNVGRQGPFTTDVVYDS 352
            RPSP  S   PR R    +  D+DN+     ARY V+VRSAKNLKR+GFRGLTNPYC+LNVGRQGP+TTDVV+DS
Sbjct:   11 RPSPSTSKS-PRRRGLAAEFVDSDNDEASCCARYHVSVRSAKNLKREGFRGLTNPYCQLNVGRQGPYTTDVVFDS 84
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig68.17835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJY4_ECTSI2.070e-1865.33C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig68contigF-serratus_M_contig68:589901..591417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-06_007450.1
Exons2
Model size352
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig68.17835.1prot_F-serratus_M_contig68.17835.1Fucus serratus malepolypeptideF-serratus_M_contig68 589901..591308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932078.6228495-CDS-F-serratus_M_contig68:589900..5899991622932078.6228495-CDS-F-serratus_M_contig68:589900..589999Fucus serratus maleCDSF-serratus_M_contig68 589901..589999 -
1690964136.187385-CDS-F-serratus_M_contig68:589900..5899991690964136.187385-CDS-F-serratus_M_contig68:589900..589999Fucus serratus maleCDSF-serratus_M_contig68 589901..589999 -
1622932078.6451252-CDS-F-serratus_M_contig68:591164..5913081622932078.6451252-CDS-F-serratus_M_contig68:591164..591308Fucus serratus maleCDSF-serratus_M_contig68 591165..591308 -
1690964136.2028065-CDS-F-serratus_M_contig68:591164..5913081690964136.2028065-CDS-F-serratus_M_contig68:591164..591308Fucus serratus maleCDSF-serratus_M_contig68 591165..591308 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932078.6735485-UTR-F-serratus_M_contig68:591308..5914171622932078.6735485-UTR-F-serratus_M_contig68:591308..591417Fucus serratus maleUTRF-serratus_M_contig68 591309..591417 -
1690964136.2142968-UTR-F-serratus_M_contig68:591308..5914171690964136.2142968-UTR-F-serratus_M_contig68:591308..591417Fucus serratus maleUTRF-serratus_M_contig68 591309..591417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig68.17835.1

>prot_F-serratus_M_contig68.17835.1 ID=prot_F-serratus_M_contig68.17835.1|Name=mRNA_F-serratus_M_contig68.17835.1|organism=Fucus serratus male|type=polypeptide|length=81bp
MGRMPMDSPKLNRARRPSPLMSPLRPRDRQAFDTDNEARYVVTVRSAKNL
KRQGFRGLTNPYCKLNVGRQGPFTTDVVYDS
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mRNA from alignment at F-serratus_M_contig68:589901..591417-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig68.17835.1 ID=mRNA_F-serratus_M_contig68.17835.1|Name=mRNA_F-serratus_M_contig68.17835.1|organism=Fucus serratus male|type=mRNA|length=1517bp|location=Sequence derived from alignment at F-serratus_M_contig68:589901..591417- (Fucus serratus male)
CCTTACGTTGCACCGTGATACGGCGCCGTCAGCTAACATCAACTCCTGCC
GAGGAGGATCGTTATACATTCTTCTGTAGAACCAGTGGTACATTGCTGCA
TTGCATTTTATGGGGAGAATGCCGATGGACTCGCCCAAGCTGAACCGCGC
TCGTCGTCCCAGTCCGTTGATGTCTCCTTTGCGGCCTAGGGATCGTCAGG
CTTTTGACACGGACAACGAGGCGCGATATGTGGTCACCGTCCGCAGTGCT
AAGGTACCTAGCCCACAGATCCGAGGAACATAGATAACGCCCCTGATGCA
GAGGTTATGCTAGGACTGACCGACGGCAGTTTTGGTCAGAATTCACCTAA
TAAAGATGAAGTGGCACCAATTGTCTTGAGTTCCAGTTTCCACAACATCT
CCTACAACCAACAACTGCAGTCAGTAGTACTGTACCAGGTATTACCGTTA
GGAGCTCTATAGTTTAAAGAAAATAGAAAATACAGAACGCACCTAGACCT
ATTGTTGTTTCTCACATTCAGCGTATTGGTTGCCAACCCGAAAAAACTAC
TTTACACGATGGCCAATCCCGCTCGTGGTCTGCTGAACAGGGAAAATAGA
ACAAAAGAAAAAAGTCTGGCAGCATAGTATTATACGCTAGAGCGCTAAAC
GACAAGTACATACTGCTAAAGGACCATTTTGCAACTGGTATATGTAGTAC
CGCTGTGTACAAGGAACACGACAACGGACGGAAGAGATGCAGCAATTCAT
GAGGATTTATGTTCTGTTATACTCCATACATGCTCCGCCGACGCGGCCAA
ATTTATCATCGATCCACGTGCTCGGTTACTATTAATATCAAGATCACCTC
TCTGGAACACGCACTGATTGGTGCCCAGTAACGACCACACACTGCGATGC
TGCCATCCCATCTTCCTATTGCGCATTTAAGGATTCATCTCCGCCCGCTT
CACGACGTCGCTTTTGACTCGAAAAAAAACCAGTACAAGCTGTGTTTAGG
GGTACAGAGCAAAAATGTCTTGTACACAAGTCAGTACTGAACAGCAGTAG
GTACAAGGAAGTTGCACAGCTCGAAATACTATTATTAATACTACCAGTAT
TGCTTGTTTAGTTGTACAAGGTACCGGGACTCTGTTTAACTATATATCGT
CGTCCTACAAATACATACGGTAATTAGTATCACTAGGACAACAGTGCCTG
AAGCCGAAGATGGCGTTAAGCAAACGTACCGCTCTATGCACAGCACAGTC
CTCATTGAGGCCGAAATATTATCGTCCGGGCTACCGTACAACTCAATACC
CCGTCCCCCGTCCCCCTATTGGCGTGACTCGATCATAATATTATACTCCA
AGTACTATCTTTCCCCTGCTTGGCATTCGCATTCAACACCATTTGCTCTT
TGTTCCTTGTGCTTTCAGAACCTCAAGCGTCAAGGTTTTCGTGGGCTCAC
CAATCCATACTGCAAACTCAACGTCGGGAGGCAGGGACCGTTCACGACGG
ATGTCGTGTACGACTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig68:589901..591417-

>mRNA_F-serratus_M_contig68.17835.1 ID=mRNA_F-serratus_M_contig68.17835.1|Name=mRNA_F-serratus_M_contig68.17835.1|organism=Fucus serratus male|type=CDS|length=486bp|location=Sequence derived from alignment at F-serratus_M_contig68:589901..591417- (Fucus serratus male)
ATGGGGAGAATGCCGATGGACTCGCCCAAGCTGAACCGCGCTCGTCGTCC
CAGTCCGTTGATGTCTCCTTTGCGGCCTAGGGATCGTCAGGCTTTTGACA
CGGACAACGAGGCGCGATATGTGGTCACCGTCCGCAGTGCTAAGATGGGG
AGAATGCCGATGGACTCGCCCAAGCTGAACCGCGCTCGTCGTCCCAGTCC
GTTGATGTCTCCTTTGCGGCCTAGGGATCGTCAGGCTTTTGACACGGACA
ACGAGGCGCGATATGTGGTCACCGTCCGCAGTGCTAAGAACCTCAAGCGT
CAAGGTTTTCGTGGGCTCACCAATCCATACTGCAAACTCAACGTCGGGAG
GCAGGGACCGTTCACGACGGATGTCGTGTACGACTCGAACCTCAAGCGTC
AAGGTTTTCGTGGGCTCACCAATCCATACTGCAAACTCAACGTCGGGAGG
CAGGGACCGTTCACGACGGATGTCGTGTACGACTCG
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