mRNA_F-serratus_M_contig68.17819.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: A0A6H5KZ28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ28_9PHAE) HSP 1 Score: 144 bits (364), Expect = 2.080e-37 Identity = 75/142 (52.82%), Postives = 95/142 (66.90%), Query Frame = 1
Query: 4 SSYYDAVVTVNVKRCEEVQPSVHEREVTLTVLGREFCVAKSVVVLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAGRKATEASGGSGGK-VQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEFATDLFELADG*R 426
SSYY++ VTV+V C EV P V++REV ++VLG FCVAKS+VV+H C E K G +GLGQ+F + +ILPRFELL AGR+ ++ SG G E V + G WRLYDL+S H+SCRI+EEF DLF L G R
Sbjct: 191 SSYYNSPVTVDVIFCTEVGPGVYDREVEISVLGHVFCVAKSLVVVHDPACAEAVKTGRVGLGQLFHSLNILPRFELLNAGRRVGRSARFSGNSDTIGGEKEGVCTRDDGGFWRLYDLRSGHVSCRIYEEFPPDLFGLEQGKR 332
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: A0A835YNG4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNG4_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.950e-26 Identity = 58/136 (42.65%), Postives = 84/136 (61.76%), Query Frame = 1
Query: 4 SSYYDAVVTVNVKRCEEVQPSVHEREVTLTVLGREFCVAKSVVVLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAGRKATEASGGSGGKVQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEFATDLFEL 411
SSYY+A V V++ +C+ V+ER VTL+V G +FC AKS+VVLHS C E + +G+GQ+F+ D LP F LL G+ S ++ + P +WR+YDL+S+HLSCRI E+FA +LF++
Sbjct: 142 SSYYNAPVDVHIHQCDRQGEHVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQHQPSPS-------SQTDTGASPTSSISGIWRIYDLESKHLSCRIQEKFADNLFDM 270
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: D8LJX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX8_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 1.580e-19 Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query: 133 VLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAGRKATEASG--GSGGKVQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEFATDLFELADG*R 426
V+H + C E K G +GLGQ+F + +ILPRFELL AGR+ ++ G+ + G + EGG WRLYDL+S H+SCRI+EEF DLF L G R
Sbjct: 18 VVHDAACAEAVKTGRVGLGQLFHSLNILPRFELLNAGRRVGRSARFPGNSDTIGGEKEGGCTGEEGG-FWRLYDLRSGHVSCRIYEEFPPDLFGLDQGKR 116
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: A0A7S2L0C0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L0C0_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.400e-18 Identity = 52/143 (36.36%), Postives = 74/143 (51.75%), Query Frame = 1
Query: 4 SSYYDAVVTVNVKRCEE-------VQPSVHEREVTLTVLGREFCVAKSVVVLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAGRKATEASGGSGGKVQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEFATDLFEL 411
SS+YD+ VTV V C E V +R V L V + FC A S + +H +C E + G++GLGQ+F+ D LP F+LL AGR E G +WRLY+LKS+ L+C I E+F+ D++ +
Sbjct: 181 SSFYDSPVTVVVNSCVERPRLCASENAGVWDRSVDLKVYNKRFCRATSEITVHEPMCAELVRSGEVGLGQLFRYLDKLPTFDLLDAGR-----------------------TESGGMWRLYELKSKELTCSIFEDFSPDVWSM 300
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: B7G8T3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8T3_PHATC) HSP 1 Score: 86.7 bits (213), Expect = 1.020e-15 Identity = 54/163 (33.13%), Postives = 76/163 (46.63%), Query Frame = 1
Query: 4 SSYYDAVVTVNVKRCEEVQPSVH---------------------EREVTLTVLGREFCVAKSVVVLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAG------RKATEASGGSGGKVQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEFATDLFEL 411
SSYYDA V V V C + +V +R V LTV G+ FC A SV+ ++ +C+ + G +GLGQ+F+ D+LP F L AG AT+ G GG+ +G WR Y L +SCRIHE+F +++L
Sbjct: 204 SSYYDAPVQVVVDSCRKRSSNVSSNVQIMSRPIQLSGAATAQVWDRVVHLTVFGKTFCTATSVITVYDELCQSLVESGQVGLGQLFRYLDLLPEFTLHNAGVHQTGKTMATKKVGRGGGRGRGE-----------GFWRDYTLSCAEISCRIHEDFQQGIWDL 355
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: A0A7S2AJ61_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AJ61_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 2.170e-14 Identity = 50/140 (35.71%), Postives = 70/140 (50.00%), Query Frame = 1
Query: 4 SSYYDAVVTVNVKRCEEVQPSVHEREVTLTV--LGRE--FCVAKSVVVLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAGRKATEASGGSGGKVQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEFATDLFEL 411
SSYY+ V V +E+ SV +REV ++V G FCVA S +V+ + R+ G +G+GQ+F + ILP+F+LL AGR ++G WR Y+L S + CRI E F D FEL
Sbjct: 10 SSYYNCEVMVKNIYTQELTESVFDREVEISVNPTGEPVVFCVAYSTIVVKNETIRDAINSGTVGVGQVFSHYHILPKFQLLDAGRT----------------------MDG--FWRFYELDSEFIRCRIRENFRADSFEL 125
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: A0A7S0UIX0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UIX0_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.230e-12 Identity = 49/149 (32.89%), Postives = 71/149 (47.65%), Query Frame = 1
Query: 4 SSYYDAVVTVNVKRCEEVQP------------SVHEREVTLTVLGRE-FCVAKSVVVLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAGRKATEASGGSGGKVQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEFATDLFEL 411
SSYYDA V V + C+ +P ++ +R V L + + FC A SVV +HS + + G +G+GQ+F+ F+ILP F LL AG P E G WR Y L+S ++C I E F +++EL
Sbjct: 191 SSYYDAPVVVEMVHCKRQKPPKINSSSSVGATAMWDRRVLLKIFDDQTFCTADSVVEVHSREVEDLVESGQVGIGQLFRHFNILPEFTLLAAG-----------------------PTEDGGFWRNYTLESDLVTCSIREVFCKNVWEL 316
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: A0A4P9W9T6_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W9T6_9FUNG) HSP 1 Score: 59.3 bits (142), Expect = 2.770e-7 Identity = 39/137 (28.47%), Postives = 63/137 (45.99%), Query Frame = 1
Query: 4 SSYYDAVVTVNV---KRCEEVQ-----PSVHEREVTLTVLGREFCVAKSVVVLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAGRKATEASGGSGGKVQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEF 390
S++++A VTV + R +E +V REV + C AKS + + ++ +G+GQ+F+ ++LP FEL+RAG+ WR Y+L+S ++CRIHEEF
Sbjct: 32 SAFWNATVTVEIITNARLDETAVTDPLKAVFRREVNIRCRDNVVCNAKSTITITDPEHLRLIEEELVGIGQLFRYLNVLPEFELVRAGQTPE------------------------TFWRDYELRSAGIACRIHEEF 144 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig68.17819.1 >prot_F-serratus_M_contig68.17819.1 ID=prot_F-serratus_M_contig68.17819.1|Name=mRNA_F-serratus_M_contig68.17819.1|organism=Fucus serratus male|type=polypeptide|length=77bp MFQAFDILPRFELLRAGRKATEASGGSGGKVQGSEAMSVPPLEGGNLWRLback to top mRNA from alignment at F-serratus_M_contig68:72470..73748+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig68.17819.1 ID=mRNA_F-serratus_M_contig68.17819.1|Name=mRNA_F-serratus_M_contig68.17819.1|organism=Fucus serratus male|type=mRNA|length=1279bp|location=Sequence derived from alignment at F-serratus_M_contig68:72470..73748+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig68:72470..73748+ >mRNA_F-serratus_M_contig68.17819.1 ID=mRNA_F-serratus_M_contig68.17819.1|Name=mRNA_F-serratus_M_contig68.17819.1|organism=Fucus serratus male|type=CDS|length=462bp|location=Sequence derived from alignment at F-serratus_M_contig68:72470..73748+ (Fucus serratus male)back to top |