mRNA_F-serratus_M_contig679.17810.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig679.17810.1
Unique NamemRNA_F-serratus_M_contig679.17810.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig679.17810.1 vs. uniprot
Match: D8LN02_ECTSI (Dynein heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN02_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 2.000e-83
Identity = 135/146 (92.47%), Postives = 142/146 (97.26%), Query Frame = 1 
Query:    4 GLKRVKTSITVLHCNARTTAENVITKIVQTCSLFSAPDGRVFRPRDCERLVLYLKDINLPRPDKYNTCMLIAFLQQLQTFGGFYDENLEFLRLERVHLVASMNAATTVGRHPLSSRFTATVRIGVLDYPDETELCSVYSTFLGKAL 441
            G KRVKTSITVLHCNARTTAE+VITK+ QTCSLFSAPDGRV+RPRDCERLVLYLKDINLPRPDKY+TCMLIAFLQQ+QTFGGFYDE+LEFLRLERVHLVASMNAATTVGRHPLSSRFTATVRIGVLDYPD +ELCSVYS FLGKAL
Sbjct: 1749 GSKRVKTSITVLHCNARTTAEHVITKVAQTCSLFSAPDGRVYRPRDCERLVLYLKDINLPRPDKYDTCMLIAFLQQVQTFGGFYDEDLEFLRLERVHLVASMNAATTVGRHPLSSRFTATVRIGVLDYPDGSELCSVYSAFLGKAL 1894
[Close]
BLAST of mRNA_F-serratus_M_contig679.17810.1 vs. uniprot
Match: A0A6H5L381_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L381_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 2.990e-82
Identity = 133/146 (91.10%), Postives = 140/146 (95.89%), Query Frame = 1 
Query:    4 GLKRVKTSITVLHCNARTTAENVITKIVQTCSLFSAPDGRVFRPRDCERLVLYLKDINLPRPDKYNTCMLIAFLQQLQTFGGFYDENLEFLRLERVHLVASMNAATTVGRHPLSSRFTATVRIGVLDYPDETELCSVYSTFLGKAL 441
            G KR+KTSI VLHCNARTTAE+VITK+ QTCSLFSAPDGRV+RPRDCERLVLYLKDINLPRPDKY+TCMLIAFLQQ+QT GGFYDENLEFLRLERVHLVASMNAATTVGRHPLSSRFTATVRIGVLDYPD +ELCSVYS FLGKAL
Sbjct:  861 GSKRIKTSIAVLHCNARTTAEHVITKVAQTCSLFSAPDGRVYRPRDCERLVLYLKDINLPRPDKYDTCMLIAFLQQVQTSGGFYDENLEFLRLERVHLVASMNAATTVGRHPLSSRFTATVRIGVLDYPDGSELCSVYSAFLGKAL 1006
[Close]
BLAST of mRNA_F-serratus_M_contig679.17810.1 vs. uniprot
Match: A0A812ZW42_SYMMI (DYH1B protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZW42_SYMMI)

HSP 1 Score: 221 bits (563), Expect = 3.700e-70
Identity = 105/144 (72.92%), Postives = 125/144 (86.81%), Query Frame = 1 
Query:   10 KRVKTSITVLHCNARTTAENVITKIVQTCSLFSAPDGRVFRPRDCERLVLYLKDINLPRPDKYNTCMLIAFLQQLQTFGGFYDENLEFLRLERVHLVASMNAATTVGRHPLSSRFTATVRIGVLDYPDETELCSVYSTFLGKAL 441
            +R    I  LHCNA+TTA++VI+K+ QTCSLFS+P+GRV+RPRDCERLVLYLKDINLPRPD+Y+TC LIAFLQQL TF GFYDE LEFLR ER+ +VAS+NAATTVGRHPLS+RFTA VRIGV+DYP+ +EL +VY+ FL  AL
Sbjct:   58 QRKNVGIATLHCNAQTTADDVISKVAQTCSLFSSPEGRVYRPRDCERLVLYLKDINLPRPDQYDTCQLIAFLQQLITFEGFYDEALEFLRFERIQIVASINAATTVGRHPLSTRFTAVVRIGVVDYPETSELVNVYNAFLRVAL 201
[Close]
BLAST of mRNA_F-serratus_M_contig679.17810.1 vs. uniprot
Match: A0A7S1XUW8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUW8_9STRA)

HSP 1 Score: 231 bits (589), Expect = 9.750e-70
Identity = 110/143 (76.92%), Postives = 125/143 (87.41%), Query Frame = 1 
Query:   10 KRVKTSITVLHCNARTTAENVITKIVQTCSLFSAPDGRVFRPRDCERLVLYLKDINLPRPDKYNTCMLIAFLQQLQTFGGFYDENLEFLRLERVHLVASMNAATTVGRHPLSSRFTATVRIGVLDYPDETELCSVYSTFLGKA 438
            +R  T +T LHCNA+TTAE+VITKI  TCSLFS+P+GRV+RPRDCERLVLYLKD+NLPRPD YNTCMLIAFLQQL T+GGFYDENLEFLR+ER+ +VASMNAATTVGRH LS+RFTA VRIG LDYP+  EL +VY TFL  A
Sbjct:  211 QRRGTGVTTLHCNAQTTAEHVITKIAATCSLFSSPEGRVYRPRDCERLVLYLKDLNLPRPDMYNTCMLIAFLQQLLTYGGFYDENLEFLRIERIQIVASMNAATTVGRHALSTRFTANVRIGTLDYPERQELSTVYDTFLESA 353
[Close]
BLAST of mRNA_F-serratus_M_contig679.17810.1 vs. uniprot
Match: A0A836CKQ4_9STRA (Dynein heavy chain, N-terminal region 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKQ4_9STRA)

HSP 1 Score: 221 bits (562), Expect = 6.490e-64
Identity = 108/145 (74.48%), Postives = 122/145 (84.14%), Query Frame = 1 
Query:    4 GLKRVKTSITVLHCNARTTAENVITKIVQTCSLFSAPDGRVFRPRDCERLVLYLKDINLPRPDKYNTCMLIAFLQQLQTFGGFYDENLEFLRLERVHLVASMNAATTVGRHPLSSRFTATVRIGVLDYPDETELCSVYSTFLGKA 438
            G +  K S+ VLHCNA+TTAE+VI K+ QTCSLFS+P+GRV+RPRD ERLVLYLKDINLPRPD Y+TCML+AFLQQL TFGGFYDE  EFLR+ERV LVASMNAATTVGRHPLS+RFTA+VRI V DYPD  EL +VY   L  A
Sbjct: 1249 GRRGRKVSLAVLHCNAQTTAEDVIAKVAQTCSLFSSPEGRVYRPRDSERLVLYLKDINLPRPDMYDTCMLVAFLQQLLTFGGFYDEGREFLRVERVQLVASMNAATTVGRHPLSTRFTASVRILVCDYPDAAELSAVYDALLSTA 1393
[Close]
BLAST of mRNA_F-serratus_M_contig679.17810.1 vs. uniprot
Match: A0A482SUX4_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUX4_9ARCH)

HSP 1 Score: 215 bits (547), Expect = 6.780e-62
Identity = 102/144 (70.83%), Postives = 122/144 (84.72%), Query Frame = 1 
Query:   10 KRVKTSITVLHCNARTTAENVITKIVQTCSLFSAPDGRVFRPRDCERLVLYLKDINLPRPDKYNTCMLIAFLQQLQTFGGFYDENLEFLRLERVHLVASMNAATTVGRHPLSSRFTATVRIGVLDYPDETELCSVYSTFLGKAL 441
            K+    I  L+CNA+TT+++VI+KI QTCSL+S+ +GRV+RPRDCERLVL+LKDINLP+PD Y+TC LIAFLQQ+ TFGGFYDE LEFLRLER+ +VASMNAATTVGRHPLS+RFTA VRIGVLDYP+  EL +VY  FL   L
Sbjct:  601 KKKNIGIATLNCNAQTTSDDVISKIAQTCSLYSSSEGRVYRPRDCERLVLFLKDINLPKPDMYDTCQLIAFLQQIITFGGFYDEALEFLRLERIQIVASMNAATTVGRHPLSTRFTAVVRIGVLDYPETNELVTVYENFLSAIL 744
[Close]
BLAST of mRNA_F-serratus_M_contig679.17810.1 vs. uniprot
Match: F0YP13_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP13_AURAN)

HSP 1 Score: 213 bits (541), Expect = 4.380e-61
Identity = 105/143 (73.43%), Postives = 118/143 (82.52%), Query Frame = 1 
Query:   13 RVKTSITVLHCNARTTAENVITKIVQTCSLFSAPDGRVFRPRDCERLVLYLKDINLPRPDKYNTCMLIAFLQQLQTFGGFYDENLEFLRLERVHLVASMNAATTVGRHPLSSRFTATVRIGVLDYPDETELCSVYSTFLGKAL 441
            R K  +  LHC+ART A +VI KI Q CSLFSAP+GRV+RPRDCERLVLYLKD+NLPRPD Y+TCMLIAFLQQL TF GFYD +LEFLRLE V +VASMN ATTVGRHPLS+RFTATVR+ VLDYPD  EL +VY+  L  AL
Sbjct: 1110 RRKVGVATLHCSARTDASHVIAKIGQCCSLFSAPEGRVYRPRDCERLVLYLKDLNLPRPDAYDTCMLIAFLQQLVTFRGFYDASLEFLRLEHVQIVASMNPATTVGRHPLSTRFTATVRVCVLDYPDTAELTAVYAELLEIAL 1252
[Close]
BLAST of mRNA_F-serratus_M_contig679.17810.1 vs. uniprot
Match: A0A662XLI3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XLI3_9STRA)

HSP 1 Score: 210 bits (534), Expect = 3.860e-60
Identity = 99/135 (73.33%), Postives = 118/135 (87.41%), Query Frame = 1 
Query:   25 SITVLHCNARTTAENVITKIVQTCSLFSAPDGRVFRPRDCERLVLYLKDINLPRPDKYNTCMLIAFLQQLQTFGGFYDENLEFLRLERVHLVASMNAATTVGRHPLSSRFTATVRIGVLDYPDETELCSVYSTFL 429
            +++VLHCNA+TTA++VI KI Q CSLFS P GRV+RPRD ERLVLYLKDINLP+PD+Y+TCMLIAFLQQL TF GFYD++LEFL +E++ LVASMNAATTVGRHPLS+RFTA V++  +DYP   ELC VYSTFL
Sbjct: 1873 TVSVLHCNAQTTADHVIHKIQQCCSLFSTPSGRVYRPRDAERLVLYLKDINLPKPDQYDTCMLIAFLQQLITFNGFYDQHLEFLGVEKIQLVASMNAATTVGRHPLSTRFTAIVKVAYMDYPTTEELCVVYSTFL 2007
[Close]
BLAST of mRNA_F-serratus_M_contig679.17810.1 vs. uniprot
Match: A0A662WYV0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WYV0_9STRA)

HSP 1 Score: 210 bits (534), Expect = 3.870e-60
Identity = 99/135 (73.33%), Postives = 118/135 (87.41%), Query Frame = 1 
Query:   25 SITVLHCNARTTAENVITKIVQTCSLFSAPDGRVFRPRDCERLVLYLKDINLPRPDKYNTCMLIAFLQQLQTFGGFYDENLEFLRLERVHLVASMNAATTVGRHPLSSRFTATVRIGVLDYPDETELCSVYSTFL 429
            +++VLHCNA+TTA++VI KI Q CSLFS P GRV+RPRD ERLVLYLKDINLP+PD+Y+TCMLIAFLQQL TF GFYD++LEFL +E++ LVASMNAATTVGRHPLS+RFTA V++  +DYP   ELC VYSTFL
Sbjct: 2405 TVSVLHCNAQTTADHVIHKIQQCCSLFSTPSGRVYRPRDAERLVLYLKDINLPKPDQYDTCMLIAFLQQLITFNGFYDQHLEFLGVEKIQLVASMNAATTVGRHPLSTRFTAIVKVAYMDYPTTEELCVVYSTFL 2539
[Close]
BLAST of mRNA_F-serratus_M_contig679.17810.1 vs. uniprot
Match: H3HBY2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBY2_PHYRM)

HSP 1 Score: 208 bits (530), Expect = 1.330e-59
Identity = 99/135 (73.33%), Postives = 117/135 (86.67%), Query Frame = 1 
Query:   25 SITVLHCNARTTAENVITKIVQTCSLFSAPDGRVFRPRDCERLVLYLKDINLPRPDKYNTCMLIAFLQQLQTFGGFYDENLEFLRLERVHLVASMNAATTVGRHPLSSRFTATVRIGVLDYPDETELCSVYSTFL 429
            +++VLHCNA+TTA++VI KI Q CSLFS P GRV+RPRD ERLVLYLKDINLPRPD+Y+TCMLIAFLQQL TF GFYD++LEFL +E++ LVASMNAATTVGRHPLS+RFTA V++  +DYP   EL  VYSTFL
Sbjct: 2375 TVSVLHCNAQTTADHVIHKIAQCCSLFSTPTGRVYRPRDAERLVLYLKDINLPRPDQYDTCMLIAFLQQLITFNGFYDQHLEFLGVEKIQLVASMNAATTVGRHPLSTRFTAIVKVAYMDYPSTEELAVVYSTFL 2509
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig679.17810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN02_ECTSI2.000e-8392.47Dynein heavy chain dynein heavy chain n=1 Tax=Ecto... [more]
A0A6H5L381_9PHAE2.990e-8291.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812ZW42_SYMMI3.700e-7072.92DYH1B protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A7S1XUW8_9STRA9.750e-7076.92Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A836CKQ4_9STRA6.490e-6474.48Dynein heavy chain, N-terminal region 2-domain-con... [more]
A0A482SUX4_9ARCH6.780e-6270.83Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
F0YP13_AURAN4.380e-6173.43Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A662XLI3_9STRA3.860e-6073.33Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A662WYV0_9STRA3.870e-6073.33Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
H3HBY2_PHYRM1.330e-5973.33Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig679contigF-serratus_M_contig679:365158..366143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.9
Seed ortholog evalue5.3e-72
Seed eggNOG ortholog2880.D8LN02
Preferred nameDYNC2H1
KEGG koko:K05636,ko:K10414
KEGG Pathwayko04145,ko04151,ko04510,ko04512,ko04962,ko05132,ko05145,ko05146,ko05165,ko05200,ko05222,map04145,map04151,map04510,map04512,map04962,map05132,map05145,map05146,map05165,map05200,map05222
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001568,GO:0001578,GO:0001944,GO:0002119,GO:0002164,GO:0003002,GO:0003008,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005856,GO:0005858,GO:0005868,GO:0005874,GO:0005875,GO:0005929,GO:0005930,GO:0006508,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007030,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0007600,GO:0007605,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0007626,GO:0007628,GO:0007635,GO:0007638,GO:0008049,GO:0008104,GO:0008150,GO:0008152,GO:0008344,GO:0008569,GO:0008589,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009799,GO:0009855,GO:0009953,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010256,GO:0010467,GO:0010646,GO:0010647,GO:0010648,GO:0010970,GO:0010996,GO:0012505,GO:0015630,GO:0016043,GO:0016462,GO:0016485,GO:0016545,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017015,GO:0017111,GO:0019098,GO:0019538,GO:0019953,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022414,GO:0022607,GO:0022611,GO:0023051,GO:0023056,GO:0023057,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030286,GO:0030326,GO:0030512,GO:0030534,GO:0030705,GO:0030900,GO:0030990,GO:0031223,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035082,GO:0035107,GO:0035108,GO:0035113,GO:0035721,GO:0035735,GO:0036156,GO:0036159,GO:0040024,GO:0042073,GO:0042221,GO:0042623,GO:0042995,GO:0043053,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044458,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045177,GO:0045184,GO:0045433,GO:0045503,GO:0045505,GO:0045880,GO:0046907,GO:0048065,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048585,GO:0048598,GO:0048609,GO:0048699,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051604,GO:0051641,GO:0051649,GO:0051704,GO:0051959,GO:0055115,GO:0060173,GO:0060179,GO:0060271,GO:0060322,GO:0060976,GO:0061062,GO:0061063,GO:0061065,GO:0061066,GO:0061512,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090659,GO:0097014,GO:0097542,GO:0097730,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901564,GO:1902494,GO:1903844,GO:1903845,GO:1905515,GO:1990939,GO:2000026
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04516,ko04812
Exons3
Model size445
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig679.17810.1prot_F-serratus_M_contig679.17810.1Fucus serratus malepolypeptideF-serratus_M_contig679 365160..366143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932073.3209193-CDS-F-serratus_M_contig679:365159..3653061622932073.3209193-CDS-F-serratus_M_contig679:365159..365306Fucus serratus maleCDSF-serratus_M_contig679 365160..365306 -
1690964133.213992-CDS-F-serratus_M_contig679:365159..3653061690964133.213992-CDS-F-serratus_M_contig679:365159..365306Fucus serratus maleCDSF-serratus_M_contig679 365160..365306 -
1622932073.3530948-CDS-F-serratus_M_contig679:365535..3657481622932073.3530948-CDS-F-serratus_M_contig679:365535..365748Fucus serratus maleCDSF-serratus_M_contig679 365536..365748 -
1690964133.23236-CDS-F-serratus_M_contig679:365535..3657481690964133.23236-CDS-F-serratus_M_contig679:365535..365748Fucus serratus maleCDSF-serratus_M_contig679 365536..365748 -
1622932073.3723645-CDS-F-serratus_M_contig679:366062..3661431622932073.3723645-CDS-F-serratus_M_contig679:366062..366143Fucus serratus maleCDSF-serratus_M_contig679 366063..366143 -
1690964133.2492087-CDS-F-serratus_M_contig679:366062..3661431690964133.2492087-CDS-F-serratus_M_contig679:366062..366143Fucus serratus maleCDSF-serratus_M_contig679 366063..366143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig679.17810.1

>prot_F-serratus_M_contig679.17810.1 ID=prot_F-serratus_M_contig679.17810.1|Name=mRNA_F-serratus_M_contig679.17810.1|organism=Fucus serratus male|type=polypeptide|length=147bp
GGLKRVKTSITVLHCNARTTAENVITKIVQTCSLFSAPDGRVFRPRDCER
LVLYLKDINLPRPDKYNTCMLIAFLQQLQTFGGFYDENLEFLRLERVHLV
ASMNAATTVGRHPLSSRFTATVRIGVLDYPDETELCSVYSTFLGKAL
back to top

mRNA from alignment at F-serratus_M_contig679:365158..366143-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig679.17810.1 ID=mRNA_F-serratus_M_contig679.17810.1|Name=mRNA_F-serratus_M_contig679.17810.1|organism=Fucus serratus male|type=mRNA|length=986bp|location=Sequence derived from alignment at F-serratus_M_contig679:365158..366143- (Fucus serratus male)
GGAGGGCTAAAACGAGTTAAAACATCGATCACCGTCTTGCACTGCAACGC
CAGAACAACAGCCGAGAACGTAATCACGAAGGCGAGCACTTCCGCGTTAA
TCCGTCTCGCGTAGTCACCATCTTTCTGAGCCGCAGCCAGCCCGCGCTCG
ATCGTTGACAACCGAATGTTCGTCACAGCCTCTTTCAAGCGTGTCGTAGG
CTCTGTTATTCTTTCAGCTGAGACGAGGGCGATGAGCGGCTGTGGCCGCA
CGGGGGTATATACACCGAGCCGTACGCCAATAACTTGAATATTTGTTGAC
CACATCAGACGCGTTGATCCATTTTGCGAAGATTCTTTCGCACACTGCCT
CGTCACCGCTGTTTTATTCCACTCACCTTCTGCACACATCCATAGATTGT
ACAGACTTGTAGCTTGTTCAGCGCTCCCGATGGGCGGGTTTTCAGGCCAC
GCGACTGCGAACGCCTCGTCCTCTACCTCAAGGACATCAACCTACCGCGT
CCCGACAAGTACAACACGTGTATGCTCATCGCATTCCTCCAGCAGCTGCA
GACCTTTGGCGGCTTCTACGACGAGAATCTCGAGTTTCTTCGGCTAGAAA
GGGTACACGTGAGTTTTTTCGCGTCGCACAAAAATAGCTCTCGTTTGAGC
GCGATCGGCCTCCCCTCCCCTTTATTTATCGTACCCCAAGAGTGCGAGAA
TATTGAACAGTCGTCCCGTAGGCCACTCTAGGAACAGAACGTTAAACATA
TACGGTGACATGAAGAATGCCGACAGATACCACACATACTCCCTACGTTA
TTTACCCACATTTTGAACGTGACCGGCACCGCGCCAGCTGGTGGCCTCGA
TGAACGCGGCGACAACTGTGGGGCGGCACCCGCTTTCTTCTCGATTTACC
GCCACGGTGAGGATAGGCGTTCTTGATTACCCAGATGAAACCGAGTTATG
CTCCGTCTATTCCACCTTTCTGGGCAAAGCACTGGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig679:365158..366143-

>mRNA_F-serratus_M_contig679.17810.1 ID=mRNA_F-serratus_M_contig679.17810.1|Name=mRNA_F-serratus_M_contig679.17810.1|organism=Fucus serratus male|type=CDS|length=882bp|location=Sequence derived from alignment at F-serratus_M_contig679:365158..366143- (Fucus serratus male)
GGAGGGCTAAAACGAGTTAAAACATCGATCACCGTCTTGCACTGCAACGC
CAGAACAACAGCCGAGAACGTAATCACGAAGGGAGGGCTAAAACGAGTTA
AAACATCGATCACCGTCTTGCACTGCAACGCCAGAACAACAGCCGAGAAC
GTAATCACGAAGATTGTACAGACTTGTAGCTTGTTCAGCGCTCCCGATGG
GCGGGTTTTCAGGCCACGCGACTGCGAACGCCTCGTCCTCTACCTCAAGG
ACATCAACCTACCGCGTCCCGACAAGTACAACACGTGTATGCTCATCGCA
TTCCTCCAGCAGCTGCAGACCTTTGGCGGCTTCTACGACGAGAATCTCGA
GTTTCTTCGGCTAGAAAGGGTACACATTGTACAGACTTGTAGCTTGTTCA
GCGCTCCCGATGGGCGGGTTTTCAGGCCACGCGACTGCGAACGCCTCGTC
CTCTACCTCAAGGACATCAACCTACCGCGTCCCGACAAGTACAACACGTG
TATGCTCATCGCATTCCTCCAGCAGCTGCAGACCTTTGGCGGCTTCTACG
ACGAGAATCTCGAGTTTCTTCGGCTAGAAAGGGTACACCTGGTGGCCTCG
ATGAACGCGGCGACAACTGTGGGGCGGCACCCGCTTTCTTCTCGATTTAC
CGCCACGGTGAGGATAGGCGTTCTTGATTACCCAGATGAAACCGAGTTAT
GCTCCGTCTATTCCACCTTTCTGGGCAAAGCACTGCTGGTGGCCTCGATG
AACGCGGCGACAACTGTGGGGCGGCACCCGCTTTCTTCTCGATTTACCGC
CACGGTGAGGATAGGCGTTCTTGATTACCCAGATGAAACCGAGTTATGCT
CCGTCTATTCCACCTTTCTGGGCAAAGCACTG
back to top