mRNA_F-serratus_M_contig679.17798.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig679.17798.1
Unique NamemRNA_F-serratus_M_contig679.17798.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig679.17798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig679contigF-serratus_M_contig679:106341..107034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size301
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932068.3225453-CDS-F-serratus_M_contig679:106342..1064301622932068.3225453-CDS-F-serratus_M_contig679:106342..106430Fucus serratus maleCDSF-serratus_M_contig679 106343..106430 -
1690964130.192052-CDS-F-serratus_M_contig679:106342..1064301690964130.192052-CDS-F-serratus_M_contig679:106342..106430Fucus serratus maleCDSF-serratus_M_contig679 106343..106430 -
1622932068.3415763-CDS-F-serratus_M_contig679:106825..1070341622932068.3415763-CDS-F-serratus_M_contig679:106825..107034Fucus serratus maleCDSF-serratus_M_contig679 106826..107034 -
1690964130.202442-CDS-F-serratus_M_contig679:106825..1070341690964130.202442-CDS-F-serratus_M_contig679:106825..107034Fucus serratus maleCDSF-serratus_M_contig679 106826..107034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig679.17798.1prot_F-serratus_M_contig679.17798.1Fucus serratus malepolypeptideF-serratus_M_contig679 106343..107034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig679.17798.1

>prot_F-serratus_M_contig679.17798.1 ID=prot_F-serratus_M_contig679.17798.1|Name=mRNA_F-serratus_M_contig679.17798.1|organism=Fucus serratus male|type=polypeptide|length=99bp
AEATVPVVEARGNGTTVVSQIGEDEDIGEVDGDDNLEQEDEDREEDMVDD
EEEEEEAVEEARAKATEGVRVSPVSSPPSVIVAPVYPTPAAVAEDILAA
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mRNA from alignment at F-serratus_M_contig679:106341..107034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig679.17798.1 ID=mRNA_F-serratus_M_contig679.17798.1|Name=mRNA_F-serratus_M_contig679.17798.1|organism=Fucus serratus male|type=mRNA|length=694bp|location=Sequence derived from alignment at F-serratus_M_contig679:106341..107034- (Fucus serratus male)
GCAGAGGCGACAGTCCCGGTGGTTGAGGCCAGAGGAAATGGCACCACGGT
TGTTTCTCAGATAGGCGAAGACGAAGATATTGGGGAGGTGGACGGAGATG
ACAACTTGGAGCAGGAGGATGAAGACAGGGAGGAGGATATGGTGGACGAT
GAAGAGGAAGAGGAGGAAGCGGTGGAGGAAGCGCGAGCGAAGGCTACGGA
GGGCGTCAGGTTAGTGCATCCCGTCATGTGTGTTTTACGAGGTGTCCGGG
GTTTTAGAGAGCTCACGGGCCTTGTTAACTGGATTATGATTTTGGTTTCG
ACGGGTATAGAGAAAGGAAACGTTGTCCTCTCGGTACCAGTAGATTTTGC
TTGCTTTTGCCGAATGCTGCCTTGCCGTTGCGTCTGTACATTCCTGTCTC
CATTCCTTTTCTTTTATCAAACATCTCGACCAGCTTCATCCAGGCACGTT
GCCCTGCCCCCCACGCCCCCGCTATGTGCCAACTTTATGTTGCTAAAATG
TAAAGTTTACTGACGATCGCTTGTCACCTCCTGACCCCTTCCTCCGTCAG
AAACGCCTCTCCCCCCCCACCTCACCCCCCCGCGCTCTTTTACCTCTCCA
TTAGGGTGTCCCCAGTATCGTCTCCGCCGTCTGTCATCGTCGCACCAGTC
TATCCTACCCCCGCCGCCGTCGCCGAGGACATCCTCGCTGCCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig679:106341..107034-

>mRNA_F-serratus_M_contig679.17798.1 ID=mRNA_F-serratus_M_contig679.17798.1|Name=mRNA_F-serratus_M_contig679.17798.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig679:106341..107034- (Fucus serratus male)
GCAGAGGCGACAGTCCCGGTGGTTGAGGCCAGAGGAAATGGCACCACGGT
TGTTTCTCAGATAGGCGAAGACGAAGATATTGGGGAGGTGGACGGAGATG
ACAACTTGGAGCAGGAGGATGAAGACAGGGAGGAGGATATGGTGGACGAT
GAAGAGGAAGAGGAGGAAGCGGTGGAGGAAGCGCGAGCGAAGGCTACGGA
GGGCGTCAGGCAGAGGCGACAGTCCCGGTGGTTGAGGCCAGAGGAAATGG
CACCACGGTTGTTTCTCAGATAGGCGAAGACGAAGATATTGGGGAGGTGG
ACGGAGATGACAACTTGGAGCAGGAGGATGAAGACAGGGAGGAGGATATG
GTGGACGATGAAGAGGAAGAGGAGGAAGCGGTGGAGGAAGCGCGAGCGAA
GGCTACGGAGGGCGTCAGGGTGTCCCCAGTATCGTCTCCGCCGTCTGTCA
TCGTCGCACCAGTCTATCCTACCCCCGCCGCCGTCGCCGAGGACATCCTC
GCTGCCGGTGTCCCCAGTATCGTCTCCGCCGTCTGTCATCGTCGCACCAG
TCTATCCTACCCCCGCCGCCGTCGCCGAGGACATCCTCGCTGCC
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