mRNA_F-serratus_M_contig6784.17796.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6784.17796.1
Unique NamemRNA_F-serratus_M_contig6784.17796.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6784.17796.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.780e-12
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   19 DFVAVELDTNGTVLWRWQNGTGKNDELHAVTTDKNGRFIMAGDTLGGWNGS-SRENRDFAAVLFDASST 222
            DFVA++LD+ GT LW WQ+GT  +DE+ A     +G  ++AG T G W+G  + E  DFAAV  DA+ T
Sbjct:  190 DFVAIKLDSGGTTLWTWQDGTSSSDEIQAAAATGDGFVVLAGYTFGEWSGGLTGEECDFAAVKLDANGT 258
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BLAST of mRNA_F-serratus_M_contig6784.17796.1 vs. uniprot
Match: D8LAU1_ECTSI (PEGA domain family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU1_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 5.360e-10
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    4 GVDRG--DFVAVELD-TNGTVLWRWQNGTGKNDELHAVTTDKNGR-FIMAGDTLGGWNGSSRENRDFAAVLFD 210
            GV+ G  DFVA++L+ T+G+ +WRWQ+GT + D++ AV    +G  F++ G T G W+G +  N DFA V+ D
Sbjct:  155 GVNAGSNDFVAIKLNFTDGSEVWRWQDGTDEWDQIGAVAETADGTGFVLVGSTQGDWDGDNAGNGDFAVVMLD 227
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BLAST of mRNA_F-serratus_M_contig6784.17796.1 vs. uniprot
Match: A0A6H5JF09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF09_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.620e-8
Identity = 29/73 (39.73%), Postives = 40/73 (54.79%), Query Frame = 1 
Query:    4 GVDRG--DFVAVELDTNGTVLWRWQNGTGKNDELHAVTTDKNGRFIMAGDTLGGWNGSSRE--NRDFAAVLFD 210
            GV+ G  D   V+LD +G VLWRWQ GT ++D   A    ++G  ++AG T+G W+GS       D   V  D
Sbjct:  185 GVNAGETDCTVVKLDADGGVLWRWQGGTAESDVCSATVVAEDGSIVLAGYTVGSWDGSEANAGEEDLVVVKLD 257
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BLAST of mRNA_F-serratus_M_contig6784.17796.1 vs. uniprot
Match: A0A1Q9F4G3_SYMMI (Calmodulin n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9F4G3_SYMMI)

HSP 1 Score: 53.9 bits (128), Expect = 4.650e-6
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    7 VDRGDF--VAVELDTNGTVLWRWQNGTGKNDELHAVTTDKNGRFIMAGDTLGGWNG 168
            + +GD+  V +EL++ GT+LW +Q GT + D  HAV  D +G  ++AG +LG + G
Sbjct: 1079 ISKGDYDMVIMELNSQGTLLWLFQTGTSQADYAHAVQVDSSGDIVLAGHSLGSFEG 1134
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BLAST of mRNA_F-serratus_M_contig6784.17796.1 vs. uniprot
Match: A0A812W225_9DINO (CACNA1A protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812W225_9DINO)

HSP 1 Score: 53.1 bits (126), Expect = 8.160e-6
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:   19 DFVAVELDTNGTVLWRWQNGTGKNDELHAVTTDKNGRFIMAGDTLGGWNG 168
            D V +EL++ GT+LW +Q GT + D  HAV  D +G  ++AG +LG + G
Sbjct:   21 DVVIMELNSQGTLLWLFQTGTSQADYAHAVQVDSSGDIVLAGHSLGSFEG 70
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BLAST of mRNA_F-serratus_M_contig6784.17796.1 vs. uniprot
Match: D7G7A3_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A3_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 5.480e-5
Identity = 22/64 (34.38%), Postives = 34/64 (53.12%), Query Frame = 1 
Query:   19 DFVAVELDTNGTVLWRWQNGTGKNDELHAVTTDKNGRFIMAGDTLGGWNGSSRENRDFAAVLFD 210
            DF   +LD NGT+ WRWQ+GT   +    V   ++G   +AG + G + G ++ +  F  V  D
Sbjct:  398 DFAVTKLDANGTLAWRWQDGTEDEEFGLMVVVGRDGGVYLAGYSTGAFGGINKGSEGFVVVKID 461
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6784.17796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LHV1_ECTSI2.780e-1247.83Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LAU1_ECTSI5.360e-1043.84PEGA domain family protein n=1 Tax=Ectocarpus sili... [more]
A0A6H5JF09_9PHAE5.620e-839.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Q9F4G3_SYMMI4.650e-641.07Calmodulin n=2 Tax=Symbiodinium microadriaticum Ta... [more]
A0A812W225_9DINO8.160e-644.00CACNA1A protein n=1 Tax=Symbiodinium necroappetens... [more]
D7G7A3_ECTSI5.480e-534.38Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6784contigF-serratus_M_contig6784:883..1906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue6.2e-09
Seed eggNOG ortholog2880.D8LRF5
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons2
Model size329
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932068.2225943-CDS-F-serratus_M_contig6784:882..11371622932068.2225943-CDS-F-serratus_M_contig6784:882..1137Fucus serratus maleCDSF-serratus_M_contig6784 883..1137 -
1690964130.160448-CDS-F-serratus_M_contig6784:882..11371690964130.160448-CDS-F-serratus_M_contig6784:882..1137Fucus serratus maleCDSF-serratus_M_contig6784 883..1137 -
1622932068.2620206-CDS-F-serratus_M_contig6784:1834..19061622932068.2620206-CDS-F-serratus_M_contig6784:1834..1906Fucus serratus maleCDSF-serratus_M_contig6784 1835..1906 -
1690964130.1819472-CDS-F-serratus_M_contig6784:1834..19061690964130.1819472-CDS-F-serratus_M_contig6784:1834..1906Fucus serratus maleCDSF-serratus_M_contig6784 1835..1906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6784.17796.1prot_F-serratus_M_contig6784.17796.1Fucus serratus malepolypeptideF-serratus_M_contig6784 883..1906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6784.17796.1

>prot_F-serratus_M_contig6784.17796.1 ID=prot_F-serratus_M_contig6784.17796.1|Name=mRNA_F-serratus_M_contig6784.17796.1|organism=Fucus serratus male|type=polypeptide|length=109bp
MGVDRGDFVAVELDTNGTVLWRWQNGTGKNDELHAVTTDKNGRFIMAGDT
LGGWNGSSRENRDFAAVLFDASSTLSATPSPTSPSTAEPTGLPPTPSPTS
FPSTAEPTR
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mRNA from alignment at F-serratus_M_contig6784:883..1906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6784.17796.1 ID=mRNA_F-serratus_M_contig6784.17796.1|Name=mRNA_F-serratus_M_contig6784.17796.1|organism=Fucus serratus male|type=mRNA|length=1024bp|location=Sequence derived from alignment at F-serratus_M_contig6784:883..1906- (Fucus serratus male)
ATGGGAGTGGATCGTGGTGACTTTGTCGCGGTTGAACTCGATACCAACGG
CACCGTTCTATGGCGCTGGCAGGTGATGAGAGCATCTCTTTTGACAGTAC
TCTCGCACCGAGTCCATTGATGAAACACCTCGCCCAGTCAATTAGCAAAT
CTACTGCGATGTAGGAGTAGACAGTGTAACTATCGCTACTGACTCCTCCC
CGCGCTAAGGGAAGTGCGATGGTGCTTTGTTAATGCTCCTATAACGTCAT
CGAAAACGATAGCCCCCTTCGGAGATAGCCGCACGATATGCTTTAACAGC
CTTTTATCAAGAACGTTTGCGAGTGAGTAGTCCACACTTCGCGCGGCAGG
CGTTCGATTGGCTGAAGCAGTCATTATCATTTCATCTCTAGGTAATTCGG
ATGGACATGACAGTTTTGCAAGCTGGAAATTTGTGCCTGTGTCATGGTAG
GCAATTGAAATATGCACCGGAGAGTGCGTACAGTGGAGATTTTCGCTGGC
TTTCGCATTTTTTAACAATCAAGTGTTGATATGTTTTTCCAATTGCACGT
TTAACGTCATCTGACACAGTCATGTACGTACAGTATGTAGGAGGGTCGGT
GATCGCGTAAGAGTGGTGTTTACATGCTCTAAAATCCCTCTTGTTATTAT
TTACATGCAGAATGCTTTTTCAGCGTGTGGATGAAAACGTCCCGCAGCCC
TCTCGACAATGCCCAAAAGCAATCCAATCCTCCCCGCTTGTGCTCGGTAC
TCATTTGCGTGGTGTTCAGAATGGTACCGGAAAAAACGATGAACTTCATG
CGGTAACCACGGACAAAAACGGTCGGTTTATAATGGCCGGAGATACTCTG
GGAGGGTGGAATGGCTCCAGCAGAGAAAATAGGGACTTTGCCGCTGTTCT
GTTCGACGCCTCATCAACCCTATCGGCCACGCCTTCTCCTACTTCTCCTT
CAACTGCTGAGCCCACTGGACTACCACCCACGCCTTCTCCTACGAGTTTC
CCTTCGACTGCTGAGCCCACTAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6784:883..1906-

>mRNA_F-serratus_M_contig6784.17796.1 ID=mRNA_F-serratus_M_contig6784.17796.1|Name=mRNA_F-serratus_M_contig6784.17796.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig6784:883..1906- (Fucus serratus male)
ATGGGAGTGGATCGTGGTGACTTTGTCGCGGTTGAACTCGATACCAACGG
CACCGTTCTATGGCGCTGGCAGATGGGAGTGGATCGTGGTGACTTTGTCG
CGGTTGAACTCGATACCAACGGCACCGTTCTATGGCGCTGGCAGAATGGT
ACCGGAAAAAACGATGAACTTCATGCGGTAACCACGGACAAAAACGGTCG
GTTTATAATGGCCGGAGATACTCTGGGAGGGTGGAATGGCTCCAGCAGAG
AAAATAGGGACTTTGCCGCTGTTCTGTTCGACGCCTCATCAACCCTATCG
GCCACGCCTTCTCCTACTTCTCCTTCAACTGCTGAGCCCACTGGACTACC
ACCCACGCCTTCTCCTACGAGTTTCCCTTCGACTGCTGAGCCCACTAGAA
ATGGTACCGGAAAAAACGATGAACTTCATGCGGTAACCACGGACAAAAAC
GGTCGGTTTATAATGGCCGGAGATACTCTGGGAGGGTGGAATGGCTCCAG
CAGAGAAAATAGGGACTTTGCCGCTGTTCTGTTCGACGCCTCATCAACCC
TATCGGCCACGCCTTCTCCTACTTCTCCTTCAACTGCTGAGCCCACTGGA
CTACCACCCACGCCTTCTCCTACGAGTTTCCCTTCGACTGCTGAGCCCAC
TAGA
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