mRNA_F-serratus_M_contig6776.17793.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6776.17793.1
Unique NamemRNA_F-serratus_M_contig6776.17793.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6776.17793.1 vs. uniprot
Match: A0A097IUD4_9PHAE (Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum TaxID=3015 RepID=A0A097IUD4_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 1.000e-89
Identity = 149/167 (89.22%), Postives = 159/167 (95.21%), Query Frame = 1 
Query:  295 GVGSYAQWDEATRQSWLLMELQSKRPLLPRTGSSIDLGLDLIVQDTLRTFEVAATLGEEALGAYVISMATSPSDVLAVKLMQKEFNMPWNMRVVPLFETLDDLEKSEDTMRTLLGLPWYRGNIDGKQEVMIGYSDSAKDAGKMAAAWAQYKAQERLARVAEEAGVKV 795
            GVGSYAQWDE TRQSWLLMELQSKRPLLPR GSS +LGL  +VQDTLRTFEVAATLGEEALGAYVISMATSPSDVLAVKLMQKEF MPWNMRVVPLFETLDDLE+SE+T+RTLL LPWYRGNI+GKQEVMIGYSDSAKDAG+MAAAWAQYKAQERLA VAE+AGV++
Sbjct:  473 GVGSYAQWDEKTRQSWLLMELQSKRPLLPRVGSSTELGLGEVVQDTLRTFEVAATLGEEALGAYVISMATSPSDVLAVKLMQKEFCMPWNMRVVPLFETLDDLEQSEETIRTLLELPWYRGNINGKQEVMIGYSDSAKDAGRMAAAWAQYKAQERLAGVAEDAGVQL 639
[Close]
BLAST of mRNA_F-serratus_M_contig6776.17793.1 vs. uniprot
Match: A0A0A0V6T3_SACJA (Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A0A0V6T3_SACJA)

HSP 1 Score: 280 bits (716), Expect = 2.210e-84
Identity = 141/167 (84.43%), Postives = 150/167 (89.82%), Query Frame = 1 
Query:  295 GVGSYAQWDEATRQSWLLMELQSKRPLLPRTGSSIDLGLDLIVQDTLRTFEVAATLGEEALGAYVISMATSPSDVLAVKLMQKEFNMPWNMRVVPLFETLDDLEKSEDTMRTLLGLPWYRGNIDGKQEVMIGYSDSAKDAGKMAAAWAQYKAQERLARVAEEAGVKV 795
            GVGSYAQWDE TRQSWLL ELQ KRPLLPR  S  DLG D IVQDTL TFE+AATLG+EALGAYVISMATSPSDVLAVKLMQKEF MPW MRVVPLFETLDDL+KSEDT+RTLLGLPWYRGNI+G QEVMIGYSDSAKDAG+MAAAWAQY AQERLA VAE + V++
Sbjct:  472 GVGSYAQWDEQTRQSWLLTELQGKRPLLPRNSSLADLGFDNIVQDTLGTFEMAATLGQEALGAYVISMATSPSDVLAVKLMQKEFGMPWKMRVVPLFETLDDLDKSEDTLRTLLGLPWYRGNIEGTQEVMIGYSDSAKDAGRMAAAWAQYNAQERLAAVAEASDVRL 638
[Close]
BLAST of mRNA_F-serratus_M_contig6776.17793.1 vs. uniprot
Match: D8LTN1_ECTSI (Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN1_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 2.250e-83
Identity = 142/167 (85.03%), Postives = 150/167 (89.82%), Query Frame = 1 
Query:  295 GVGSYAQWDEATRQSWLLMELQSKRPLLPRTGSSIDLGLDLIVQDTLRTFEVAATLGEEALGAYVISMATSPSDVLAVKLMQKEFNMPWNMRVVPLFETLDDLEKSEDTMRTLLGLPWYRGNIDGKQEVMIGYSDSAKDAGKMAAAWAQYKAQERLARVAEEAGVKV 795
            GVGSYAQWDE TRQSWLL ELQ KRPLLPR     +LG D IVQDTL TFEVAATLGEEALGA VISMA+SPSDVLAVKLMQKEF MPW+MRVVPLFETLDDLE+SE T+RTLL LPWYRG+IDGKQEVMIGYSDSAKDAGKMAAAWAQ+ AQERLA VAEEAGVK+
Sbjct:  472 GVGSYAQWDETTRQSWLLTELQGKRPLLPRNTPLSELGFDEIVQDTLGTFEVAATLGEEALGAQVISMASSPSDVLAVKLMQKEFGMPWDMRVVPLFETLDDLERSEATLRTLLSLPWYRGHIDGKQEVMIGYSDSAKDAGKMAAAWAQFNAQERLAAVAEEAGVKL 638
[Close]
BLAST of mRNA_F-serratus_M_contig6776.17793.1 vs. uniprot
Match: A0A097IUC8_9PHAE (Phosphoenolpyruvate carboxylase n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A097IUC8_9PHAE)

HSP 1 Score: 273 bits (697), Expect = 1.200e-81
Identity = 138/167 (82.63%), Postives = 148/167 (88.62%), Query Frame = 1 
Query:  295 GVGSYAQWDEATRQSWLLMELQSKRPLLPRTGSSIDLGLDLIVQDTLRTFEVAATLGEEALGAYVISMATSPSDVLAVKLMQKEFNMPWNMRVVPLFETLDDLEKSEDTMRTLLGLPWYRGNIDGKQEVMIGYSDSAKDAGKMAAAWAQYKAQERLARVAEEAGVKV 795
            GVGSYAQWDE TRQSWLL ELQ KRPLLPR  S  DLG D IVQDTL TFEVAATLGEEALGA VISMA+SPSDVLAVKLMQKEF MPWNMRVVPLFETL DLE+SE TMRTLL LPWYRG+IDG QEVMIGYSDSAKDAG++AAAWAQ+  QE+LA VAEEAG+++
Sbjct:  472 GVGSYAQWDEETRQSWLLTELQGKRPLLPRGSSLADLGFDEIVQDTLGTFEVAATLGEEALGAQVISMASSPSDVLAVKLMQKEFGMPWNMRVVPLFETLSDLEQSEATMRTLLSLPWYRGHIDGSQEVMIGYSDSAKDAGRLAAAWAQFNGQEKLAAVAEEAGIRL 638
[Close]
BLAST of mRNA_F-serratus_M_contig6776.17793.1 vs. uniprot
Match: A0A835YNR8_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR8_9STRA)

HSP 1 Score: 230 bits (587), Expect = 3.730e-66
Identity = 119/171 (69.59%), Postives = 136/171 (79.53%), Query Frame = 1 
Query:  295 GVGSYAQWDEATRQSWLLMELQSKRPLLPR----TGSSIDLGLDLIVQDTLRTFEVAATLGEEALGAYVISMATSPSDVLAVKLMQKEFNMPWNMRVVPLFETLDDLEKSEDTMRTLLGLPWYRGNIDGKQEVMIGYSDSAKDAGKMAAAWAQYKAQERLARVAEEAGVKV 795
            GVGSY QWDE TR +WLL EL SKRPLLPR    TGS+     D  V+DTLRTFE  A LG++ALGAYVISM  SPSDVLAVKL+ +EFN+ WNMRVVPLFETL DLE S  TM TL  LPWYRGNI+G QEVMIGYSDSAKDAG++AAAWAQ++AQERLA +A+   V++
Sbjct:  431 GVGSYLQWDEETRTTWLLTELNSKRPLLPRNSLTTGSAPSSAFDATVKDTLRTFETVARLGKDALGAYVISMCKSPSDVLAVKLLLQEFNVGWNMRVVPLFETLTDLEASATTMETLYSLPWYRGNINGHQEVMIGYSDSAKDAGRLAAAWAQFEAQERLASLAKAYNVQL 601
[Close]
BLAST of mRNA_F-serratus_M_contig6776.17793.1 vs. uniprot
Match: A0A4D9DD20_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD20_9STRA)

HSP 1 Score: 209 bits (532), Expect = 2.740e-59
Identity = 108/170 (63.53%), Postives = 129/170 (75.88%), Query Frame = 1 
Query:  295 GVGSYAQWDEATRQSWLLMELQSKRPLLPRT---GSSIDLGLDLIVQDTLRTFEVAATLGEEALGAYVISMATSPSDVLAVKLMQKEFNMPWNMRVVPLFETLDDLEKSEDTMRTLLGLPWYRGNIDGKQEVMIGYSDSAKDAGKMAAAWAQYKAQERLARVAEEAGVKV 795
            G+GSYAQWDE TR SWL  EL +KRPLLP+     S+ D      V D L TF + A +GEE+LGAYVISMA +PSDVLAVKL+ KEF +  NMRVVPLFETLDDL +SE TM TL   PWYRG+I GKQE+MIGYSDS+KDAG++AA WAQY+AQERLA +  +  V++
Sbjct:  482 GLGSYAQWDEETRMSWLNTELTAKRPLLPKEQPLASNKDFTFSAAVVDCLETFRMIAGMGEESLGAYVISMAKAPSDVLAVKLLMKEFGLKRNMRVVPLFETLDDLNQSEVTMATLFSHPWYRGHIQGKQEIMIGYSDSSKDAGRLAALWAQYEAQERLANLGNKHDVEL 651
[Close]
BLAST of mRNA_F-serratus_M_contig6776.17793.1 vs. uniprot
Match: W7TGA1_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGA1_9STRA)

HSP 1 Score: 209 bits (532), Expect = 2.700e-58
Identity = 108/170 (63.53%), Postives = 129/170 (75.88%), Query Frame = 1 
Query:  295 GVGSYAQWDEATRQSWLLMELQSKRPLLPRT---GSSIDLGLDLIVQDTLRTFEVAATLGEEALGAYVISMATSPSDVLAVKLMQKEFNMPWNMRVVPLFETLDDLEKSEDTMRTLLGLPWYRGNIDGKQEVMIGYSDSAKDAGKMAAAWAQYKAQERLARVAEEAGVKV 795
            G+GSYAQWDE TR SWL  EL +KRPLLP+     S+ D      V D L TF + A +GEE+LGAYVISMA +PSDVLAVKL+ KEF +  NMRVVPLFETLDDL +SE TM TL   PWYRG+I GKQE+MIGYSDS+KDAG++AA WAQY+AQERLA +  +  V++
Sbjct:  482 GLGSYAQWDEETRMSWLNTELTAKRPLLPKEQPLASNKDFTFSAAVVDCLETFRMIAGMGEESLGAYVISMAKAPSDVLAVKLLMKEFGLKRNMRVVPLFETLDDLNQSEVTMATLFSHPWYRGHIQGKQEIMIGYSDSSKDAGRLAALWAQYEAQERLANLGSKHDVEL 651
[Close]
BLAST of mRNA_F-serratus_M_contig6776.17793.1 vs. uniprot
Match: A0A075J0P2_SIMCH (Phosphoenolpyruvate carboxylase (Fragment) n=2 Tax=Caryophyllales TaxID=3524 RepID=A0A075J0P2_SIMCH)

HSP 1 Score: 173 bits (439), Expect = 7.320e-49
Identity = 93/170 (54.71%), Postives = 115/170 (67.65%), Query Frame = 1 
Query:  298 VGSYAQWDEATRQSWLLMELQSKRPL----LPRTGSSIDLGLDLIVQDTLRTFEVAATLGEEALGAYVISMATSPSDVLAVKLMQKEFNMPWNMRVVPLFETLDDLEKSEDTMRTLLGLPWYRGNIDGKQEVMIGYSDSAKDAGKMAAAWAQYKAQERLARVAEEAGVKV 795
            +GSY +W E  RQ WLL EL+ KRPL    LP+T           +   L TF V A L  +  GAY+ISMATSPSDVLAV+L+Q+E ++   +RVVPLFE LDDLE +   +  L  + WYR  IDGKQEVMIGYSDS KDAG+++AAWA YKAQE L +VA+  GVK+
Sbjct:    5 IGSYREWSEEQRQEWLLSELRGKRPLFGPDLPKTEE---------ISAVLDTFYVIAELPSDCFGAYIISMATSPSDVLAVELLQRECHIXQPLRVVPLFEKLDDLEAAPAAVARLFSIDWYRDRIDGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELVKVAKNFGVKL 165
[Close]
BLAST of mRNA_F-serratus_M_contig6776.17793.1 vs. uniprot
Match: A0A7S3Q667_9STRA (Phosphoenolpyruvate carboxylase (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q667_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.140e-48
Identity = 94/160 (58.75%), Postives = 122/160 (76.25%), Query Frame = 1 
Query:  295 GVGSYAQWDEATRQSWLLMELQSKRPLLPRTGSSIDLGLDLIVQDTLRTFEVAATLGEEALGAYVISMATSPSDVLAVKLMQKEFNMPWNMRVVPLFETLDDLEKSEDTMRTLLGLPWYRGNIDGKQEVMIGYSDSAKDAGKMAAAWAQYKAQERLARVA 774
            GVGSY++WDEAT+ +WL  EL SKRPL+ R+  + +      V+DTL TFE+ +   +++L AYVIS AT+PSDVLAV L+Q +  +   +RVVPLFETLDDL  + +TM TL  LP YRG+I+GKQEVMIGYSDSAKDAG+++A+WAQY+ QE LA VA
Sbjct:  539 GVGSYSEWDEATKINWLQAELASKRPLIHRSAWADNADFSDTVKDTLETFEMISEQHDDSLNAYVISQATTPSDVLAVLLLQIDAGVKNPLRVVPLFETLDDLNGASETMETLFNLPVYRGSINGKQEVMIGYSDSAKDAGRLSASWAQYETQEALAAVA 698
[Close]
BLAST of mRNA_F-serratus_M_contig6776.17793.1 vs. uniprot
Match: A0A432RG79_9GAMM (Phosphoenolpyruvate carboxylase (Fragment) n=1 Tax=Marinomonas sp. TaxID=1904862 RepID=A0A432RG79_9GAMM)

HSP 1 Score: 177 bits (450), Expect = 1.240e-48
Identity = 93/179 (51.96%), Postives = 128/179 (71.51%), Query Frame = 1 
Query:  259 AYGSLGRYHSLPGVGSYAQWDEATRQSWLLMELQSKRPLLPRTGSSIDLGLDLIVQDTLRTFEVAATLGEEALGAYVISMATSPSDVLAVKLMQKEFNMPWNMRVVPLFETLDDLEKSEDTMRTLLGLPWYRGNIDGKQEVMIGYSDSAKDAGKMAAAWAQYKAQERLARVAEEAGVKV 795
            A  S+ R++   G+G YA+WDEA+RQ++LL EL SKRPLLP   S      + +V++ L TF   A+  + + G+YVISMA++PSDVLAV L+ KE  + +NMR+VPLFETL DL+ +E  +  L  +PWY+  I G QEVMIGYSDSAKDAG++AA W QY+AQE L R+ ++ GV++
Sbjct:   64 ALSSITRFY---GLGDYAEWDEASRQAFLLAELNSKRPLLPSEWSP-----EPMVEEVLSTFRTIASGYQNSFGSYVISMASAPSDVLAVALLLKESGVRFNMRIVPLFETLADLDNAEPVIEQLFSMPWYKSYIAGHQEVMIGYSDSAKDAGQIAATWGQYRAQEALTRLCKKHGVRL 234
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6776.17793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A097IUD4_9PHAE1.000e-8989.22Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum ... [more]
A0A0A0V6T3_SACJA2.210e-8484.43Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina... [more]
D8LTN1_ECTSI2.250e-8385.03Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus... [more]
A0A097IUC8_9PHAE1.200e-8182.63Phosphoenolpyruvate carboxylase n=2 Tax=Scytosipho... [more]
A0A835YNR8_9STRA3.730e-6669.59Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema ... [more]
A0A4D9DD20_9STRA2.740e-5963.53Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TGA1_9STRA2.700e-5863.53Phosphoenolpyruvate carboxylase n=1 Tax=Nannochlor... [more]
A0A075J0P2_SIMCH7.320e-4954.71Phosphoenolpyruvate carboxylase (Fragment) n=2 Tax... [more]
A0A7S3Q667_9STRA1.140e-4858.75Phosphoenolpyruvate carboxylase (Fragment) n=1 Tax... [more]
A0A432RG79_9GAMM1.240e-4851.96Phosphoenolpyruvate carboxylase (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6776contigF-serratus_M_contig6776:17866..24110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.1
Seed ortholog evalue4.2e-72
Seed eggNOG ortholog2880.D8LTN1
KEGG rclassRC02741
KEGG koko:K01595
KEGG ReactionR00345
KEGG Pathwayko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200
KEGG ModuleM00168,M00170,M00171,M00172,M00173,M00346,M00374
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphoenolpyruvate carboxylase activity
EggNOG OGs2QPVS@2759,COG2352@1
EC4.1.1.31
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons7
Model size795
Cds size786
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6776.17793.1prot_F-serratus_M_contig6776.17793.1Fucus serratus malepolypeptideF-serratus_M_contig6776 17875..24110 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932067.7995622-UTR-F-serratus_M_contig6776:17865..178741622932067.7995622-UTR-F-serratus_M_contig6776:17865..17874Fucus serratus maleUTRF-serratus_M_contig6776 17866..17874 +
1690964129.9687831-UTR-F-serratus_M_contig6776:17865..178741690964129.9687831-UTR-F-serratus_M_contig6776:17865..17874Fucus serratus maleUTRF-serratus_M_contig6776 17866..17874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932067.8169556-CDS-F-serratus_M_contig6776:17874..179741622932067.8169556-CDS-F-serratus_M_contig6776:17874..17974Fucus serratus maleCDSF-serratus_M_contig6776 17875..17974 +
1690964129.9806457-CDS-F-serratus_M_contig6776:17874..179741690964129.9806457-CDS-F-serratus_M_contig6776:17874..17974Fucus serratus maleCDSF-serratus_M_contig6776 17875..17974 +
1622932067.8383267-CDS-F-serratus_M_contig6776:18798..189361622932067.8383267-CDS-F-serratus_M_contig6776:18798..18936Fucus serratus maleCDSF-serratus_M_contig6776 18799..18936 +
1690964129.990368-CDS-F-serratus_M_contig6776:18798..189361690964129.990368-CDS-F-serratus_M_contig6776:18798..18936Fucus serratus maleCDSF-serratus_M_contig6776 18799..18936 +
1622932067.8624241-CDS-F-serratus_M_contig6776:20657..208361622932067.8624241-CDS-F-serratus_M_contig6776:20657..20836Fucus serratus maleCDSF-serratus_M_contig6776 20658..20836 +
1690964130.0004683-CDS-F-serratus_M_contig6776:20657..208361690964130.0004683-CDS-F-serratus_M_contig6776:20657..20836Fucus serratus maleCDSF-serratus_M_contig6776 20658..20836 +
1622932067.8797512-CDS-F-serratus_M_contig6776:22167..222811622932067.8797512-CDS-F-serratus_M_contig6776:22167..22281Fucus serratus maleCDSF-serratus_M_contig6776 22168..22281 +
1690964130.0110686-CDS-F-serratus_M_contig6776:22167..222811690964130.0110686-CDS-F-serratus_M_contig6776:22167..22281Fucus serratus maleCDSF-serratus_M_contig6776 22168..22281 +
1622932067.8958423-CDS-F-serratus_M_contig6776:22674..227601622932067.8958423-CDS-F-serratus_M_contig6776:22674..22760Fucus serratus maleCDSF-serratus_M_contig6776 22675..22760 +
1690964130.0296319-CDS-F-serratus_M_contig6776:22674..227601690964130.0296319-CDS-F-serratus_M_contig6776:22674..22760Fucus serratus maleCDSF-serratus_M_contig6776 22675..22760 +
1622932067.911365-CDS-F-serratus_M_contig6776:23385..235121622932067.911365-CDS-F-serratus_M_contig6776:23385..23512Fucus serratus maleCDSF-serratus_M_contig6776 23386..23512 +
1690964130.0423512-CDS-F-serratus_M_contig6776:23385..235121690964130.0423512-CDS-F-serratus_M_contig6776:23385..23512Fucus serratus maleCDSF-serratus_M_contig6776 23386..23512 +
1622932067.9275272-CDS-F-serratus_M_contig6776:24068..241101622932067.9275272-CDS-F-serratus_M_contig6776:24068..24110Fucus serratus maleCDSF-serratus_M_contig6776 24069..24110 +
1690964130.0547595-CDS-F-serratus_M_contig6776:24068..241101690964130.0547595-CDS-F-serratus_M_contig6776:24068..24110Fucus serratus maleCDSF-serratus_M_contig6776 24069..24110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6776.17793.1

>prot_F-serratus_M_contig6776.17793.1 ID=prot_F-serratus_M_contig6776.17793.1|Name=mRNA_F-serratus_M_contig6776.17793.1|organism=Fucus serratus male|type=polypeptide|length=262bp
MAKWIAAEKVKAGLRHAVVCPNVTGRTKKRIAQNSGAAHPHVPVADFYGP
GGAGERSHFGRHSAGAVLRCVPGASRPSTGINAAYGSLGRYHSLPGVGSY
AQWDEATRQSWLLMELQSKRPLLPRTGSSIDLGLDLIVQDTLRTFEVAAT
LGEEALGAYVISMATSPSDVLAVKLMQKEFNMPWNMRVVPLFETLDDLEK
SEDTMRTLLGLPWYRGNIDGKQEVMIGYSDSAKDAGKMAAAWAQYKAQER
LARVAEEAGVKV
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mRNA from alignment at F-serratus_M_contig6776:17866..24110+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6776.17793.1 ID=mRNA_F-serratus_M_contig6776.17793.1|Name=mRNA_F-serratus_M_contig6776.17793.1|organism=Fucus serratus male|type=mRNA|length=6245bp|location=Sequence derived from alignment at F-serratus_M_contig6776:17866..24110+ (Fucus serratus male)
GAACGTTTCATGGCAAAATGGATCGCTGCCGAGAAAGTCAAGGCTGGACT
ACGGCACGCAGTGGTATGCCCGAACGTGACGGGAAGGACCAAGAAGAGGA
TAGCCCAAAGTAAGCGGGCTCGTGCTGGTTCGCTCGCCCTTGTTGACTAG
CCCCAAGTGGCGCGAACTGGTATCCTCCGGACGTTCTGTTTGTAGATGCC
ATGACGTTTTTTTTCTCTGGTGTTACGTTCGTTTTGCTTTGTTTTGCTTT
GTTTTGCTCTGTTTTGCTTCGTTTTTGTCTCTATGCTTTCGTTGAAGCCG
CAGCCCTTCGTTCAATCGTCCTTCGAATGCAGGCGCCCCGGTAGCCCCAC
GTGTTTCTATTTTTGGAGATGTCGCTTTTTTTCGAGTATTTCTTGTACCA
TTTCCGCTTTCTCTTTGTATGGAGAGTACGTCGTACGTTCTTTCCTTCCG
AATGGTGTTTTCTACCTTGTGACCACGGGCTGGGTTTTTTGACATCAGCT
TATGTGAGAATTCAATCAATCAATCAATGGTCACACATATAGCAAAAGTA
TGGATCAACCAATCCTGCTCGTGGTCCGCTGAACAGGAAAACTGAATATA
TTTCGCTGTCCCCGTTCGCGCCTGAGAATTTGGTCTCGCGAAACGGGTTC
GGCAGTCCCGTCCCTCGTCAGCCTGCTCATCTCCATGCTCAGGCTACATC
CGGTATATAGTGTAGTGCAGTAGAGCACAGCACCGTTTAGGTCCAAGGTC
CCTTGGTCCAGGGCAGCACAGAGCAGTGCAATACTAATAAGCAAACATAA
CTACAGTACTGTGTTCATTCTTACCAGGCTACGTAACCCAGTCTCGTTGC
CTACTCCTCGCCCCGCCCCCCCATCCCGTGCCATCCGCGTGTGCTCATCC
TTTGCTGCGCGGCTCATTCTTTGGGGCCAAAAGATTCTGGAGCCGCTCAC
CCTCATGTACCAGTCGCTGATTTCTACGGGCCAGGAGGCGCAGGCGAACG
GTCCCATTTTGGACGTCATTCGGCGGGTGCGGTGCTTCGGTGTGTGCCTG
GCGCCTCTCGACCTTCGACAGGTGAGTTACGGTGCCTCGCCGGGCCATAC
GGTGCCCGACGTACAGTGTTTAAATAAAAATGTGAATGCACCTAGACCTT
CTGATCCGCCTCCGGTAGGGGAAAAAAATCAAAACGTTTAGTGTTGTTTA
AAGAAAATTCAGAAGGCGCCTATTCTATACCTTCTGAGCATCCCCAAGTC
AGGAGGAAAACATGCCAAAACGTTTAGGTGGAATCATAGGCTGCAGATAC
AAAACCTCTTCATGGCATTTCCTGTTTGACGTATGGTGCCGCCGGATTGG
TGACACATGCGGTGGTACAAGGTGGCGCATGAGCAGACACTCTTACTTAT
AATCGTTCGGGACATGGGTGCAATATACGACATGGGGACTCGTACGGGTG
TTTCGACCGTATACGTTTCCATACGGTGTCATACGTCAACCATTGGTCAT
TGGTTAACGAGGCGTAAGAGTGCTGAACTTGCATCGCGATAGCAATTCAT
AAGGCGAGAACCGGGGAGAGATGGGAAGTTCCTTCGCGACCACAGGCATG
ATGGTGATAATGTTGCGGTAGGTGGGATTAGTAACCTAGCACGTTGAGGA
GCAGACAGTATAACGGTGGGTTTCTCCCCGATATTATGCCGTTGACCCGA
TGCTACTCCCATTAGGGAATATAACCCAATTTTATCCCATGAAGAAACTT
TGTCGTTAAAGCCTAGAGAGCCTATACATAGATATTCCGACCTATTTTTT
TTTACAATTTCCCCCCCTCTGATTGGGTGGATACTCAGAAGGTTTATAGA
GAGATACGTTTATATTTTTCTGAAAACAAAGTCAGTCCCCCTCGAATGTC
TTTATATTCTCACTGTATGCCAGTATTGCTGTGTGTAGATTGAATATTCG
TGTCCCCAAGGAAAAGGAAGGTTCCATGCGCTGAGTTGTGGTCTTTGCCT
TCAAACACGCCTGCTCATTTTTTTATTTTTTTATGTAGTACTGTACTGGT
ATGTTCTTTTGCTTGTTTTTTGCATTACGTTTATTTTTGTTGTTAGTAAA
TAGTGCCCCCTTTGTTGTTGTAGCCAATGTTTTTTCACCATTCATTTTGG
TACGCTGTTTTAAACACTGTTTTCTATATAGCAGCCCAGGGTGCGAAGGT
TTCGTAGAGCGTAAGGGCGTTCTTTCCTGGTACAATTTGTGAATCTGCAT
TACAATGTTTTCGATATAGTCGTCTCAGAGAAACGTGTCATTTcCCCCCA
TCGGTACTCCCTCGGTACTGTTATTAGACTTGAAATTATACTCTATCGTA
ACAATACGTGGGCATGTGGATGTGTATACACGAGGAAGTGGCCCCCCATC
CCCCCGGAGCTACGCCGCTGTAGTTGAAACCCAGCCAAGGGAGTTTTCTT
TCTCTAGGACTATCACTATCACGATCACTAGTCTATATATTAACCACCTA
CCTAACTGACTTTAGGGGAAATGAACACACAAACACACACACACAAGTAT
CATTAATCCCGCCTTGGGAGGATCAATGCGAGTGGCATAGAATGACTAGG
ATGACAGGGCCGGATGCGTGGTTATATGCATTTTAATAAATACACACACA
TACATGCATGTTGGGAGGACCAAGACGAGTACTGTAATATAATACAATGA
CAGCATGCCAGAGCCGGATTGCGCGTTTACGTGCAAATTCGGTAAAAATA
AGAGAAAGCGAGACACAAACAAACACATAAACATACGTGCAGGAATCAAC
GCGGCATACGGAAGCCTTGGACGCTATCACTCGCTACCTGGGGTCGGATC
CTACGCTCAGTGGGACGAGGCCACGAGACAGTCCTGGTTGTTGATGGAGC
TTCAGAGCAAGAGGCCGCTGCTACCGAGAACAGGATCGAGTATCGATCTA
GGCTTGGATCTAATAGTGCAGGTATGTTTTTGTTTTTTTTTCCTATCAAT
AGGTGTAATTTTGTCTCTGTCATATTTATTGGGGGGGCAAGGGTTTCAGA
TTAGAAGTGTTCTGTACAGCACCTGGTAGACGCTGGTGCTTTATTTCGTT
GCGCTTATCCTTCTCCATTTCACATTGCCAACCCGAGGTTTACCCTTTCC
GTCATCCGGCCTGTCCTCCCTAGGCCTTCGGTAAGCACTCAAAAGAGTCC
AAGCTGCTGTACAGTAGTAGCCGACTCAGCGTCTCACCTCTCGTCCTCTC
GCGGTGACAAATCGCTTCATGAGCTGCAACTCCCGTTCTGAGTTAGGTTT
CACCATGTCGCTGGATCGGGTTCATTGGACGCGGCTAGACCTTACCATAT
CGCTTGGAACATACAGAAATAGTTCAAACGGAAATATTGTATTAATAGTG
TCTTAATAGTGTCTTAATAGTGTATTTGTACAAGAGGTGTTTGGACAACA
TGGTCAAGTCGACGAAATTAATGGGGGAGAGCCTTGAACTCGGGAAGGTT
ACACGGGGCCTCAGCAGGGAGAAACAAAGCGGGGTTTCAATATGCGGCGT
GTTTTTTGAGGAGGGGTTCAAATCGGACCCGGCGTTTCCGTTGGAGCTGT
TCTGTGCTGTACTCTACTTGGGTATTAAAAAAAACACTACTTGCCAAGCA
GGCGTTACAATCCCGATGGTATATTATAGATTTGAGGGGACTGCTTTCAA
TTTCAGGTATTCGAAAAATCGTGAGAGTTTTGCCCTCTTGGAAGTCTGTC
GATTCAACACTCAACAAACATACCGGTATGGTTCTAACAAGTCGTGGTCA
GTCACCCTCGTCGCCCGAGTGATCTTCTTGTCTAGTAGGTAACCTCGTAC
ACCTGCTAGTGCGGGCGTCGTGAGCTCGATTCTTGACAAAGTAGGTTTTT
TTTTCTGGCTTCTGAAGCGGAAAGCGTGGGAACACACGAGTAAGTAAAAC
TCAACCATTATGATTGGTTGACTATTAGAGTTGTAAGAGAGCTGAATTTG
CATCGCGATAAATATTCATAAGGCGAGAACCgGGGGGGATATGGAGAGAT
GCTTCGTGACCACAGGCAGGATAGCAACGTTGCATTAGGTAGGATTAGTA
CCCAAGCACGTTGAGGCCCATTGATCGTAAGTGAGATAAAAATAAATAAT
CTCTCTATAGTTAGTGTATAGTTTACTGCTGTACAGGACTGCAATATACT
ACTCTGTACAGTTGTTCGACACAACACGATACGATACGATTAATAAATAT
ACTGTACTGTACTATACCGTGCTTTTGCTCTCCCTTACTCTAACGATGGC
AGGACACCCTCCGGACCTTTGAGGTGGCGGCGACCCTCGGAGAAGAAGCC
TTGGGCGCCTACGTCATCTCCATGGCGACGTCTCCATCCGACGTCCTTGC
CGTCAAGCTCATGCAGGCAAGGGCCGCCGGTCAAGAGACTAAAGCACCGG
ACAAATACAAAGTTGCACACTTTTGCTTTGTTTTTTTATCGCGTCCCGCC
CGGGGCTAGATACCATCATCCCCCCCCCCCCTGCTTCCCCTCCTATCGCG
GTAACCTCTCGGCAAGCAAAGGGCGCTAAAAGAAGAATAAAGTCAAGTCA
TGCACTTGGTAGAGTACACTTGGTCATCTCGCGCTCACGCGCACACAGCC
TCGCGGCAAAGTACACGGGCCATTTCTATAAAGCAGTTCATGCCTTGTGT
CGAACAACGTCAAGCAGTGTTCGTGGAATGACTTGCTGTCTTTTACAGAA
CGCTTCTCTCTTTGTCGCCCCCCTGCCTCCCCctcttCCTTTTGTTTTTG
CGTGAGCAGAAGGAATTCAACATGCCCTGGAACATGCGGGTGGTGCCTCT
GTTCGAAACGCTCGATGACCTGGAGAAGTCAGAGGATACCATGAGGTATG
TGTGTGTGCGTGTGTGTGTGTATTTATTAAATTGCACATAACTGCGCAAT
CCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGCATTGATCCTCCCGA
GGGGGGATCAATGATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA
TTTATTAAATTGCACATAACCGCGCAATCCGGCCCTGTCATCCTAGTCAT
TCTATGCCACTCGCATTGATCCTCCCGAGGGGGATCAATAATACTTTGTG
TGTATGTGTTTGTGTGTGTGTGCGTTTATTAAATTGCACATAACCGCGGA
ATCCGGCCCTGCCATCTAGTCATTCTATGCCACTCGCACTGATCCTCCCA
AGGGGCGTCAGTGACACTTATCACGAAAACCTCTGATCAGACGCGTCGAA
GAGTGTGTGCGTGCGTGTGTATGTATGTGTGTGTATGTGTGTGTGTATGT
GTGTGTGACCGCGCAATCCGGATCTGTCATCGTCAGTCATTCTATGCTAC
TGGGGTTTGTTCTCCCAATGAAGGCGTGTTTGTGTGGCAGGAGTCGAAGT
ATGCACTTGTCTGTTCCGTGTTGATCCACTGTCTGGGCGCGCCACTTTGG
GCTGCCGTCAATACTCGCAGAACCCTCCTGGGGTTGCCGTGGTACCGTGG
GAACATCGACGGCAAGCAGGAGGTAATGATCGGCTACTCGGACTCCGCGA
AGGACGCCGGGAAAATGGCAGCGGCATGGGCGCAGTACAAGGCTCAGGTA
TGCGGTACAGCCCAAATATATCCCTACCGTCGCCAAAGCAATCAATTATA
TCTTGAATCGTTTACGCAGAAGCTCTCACTTGGAGGACAGTAGCTGGGGA
TTCGTCGCGTTGTGGCTTGCTTATGGCTCAAGCGGCTGTACCAGTAGACT
TGTCCTGGCCGTGATTGGTCACAACTGATCGGCTTTTGTAACAGGGGGGA
GGGTGGAGCGTTGCAGAGGTCGAATGTCATCTGGCGGTGATGGGAATCAC
AAAAAATATCGCGGAACTGGTGGAATGTACCGCTTCCGCCCCTCGCCCCC
CGGGGATAGCACGCACGTATTGCCTCCGCCTCCGTCGCGTCGAACTCCGG
TTTATTATCTGAAGCAGAGAAGGGGAGCCGTGCACAGTAATCGCTCGCTT
ATGTCAACATACCGTTCCCTAATATGCGATGCTTAATTTGATGGTGCTCA
TTGGATAATGCCCATCTTCCATGGGTGACGCTCGTTGGATGATGTACGTT
GGACGATGCCCGTTGGATGATTACCACTGGATAATGCTCACTGTATGATG
CAGGAGAGGCTCGCGAGAGTTGCAGAAGAGGCGGGCGTGAAGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6776:17866..24110+

>mRNA_F-serratus_M_contig6776.17793.1 ID=mRNA_F-serratus_M_contig6776.17793.1|Name=mRNA_F-serratus_M_contig6776.17793.1|organism=Fucus serratus male|type=CDS|length=1572bp|location=Sequence derived from alignment at F-serratus_M_contig6776:17866..24110+ (Fucus serratus male)
ATGGCAAAATGGATCGCTGCCGAGAAAGTCAAGGCTGGACTACGGCACGC
AGTGGTATGCCCGAACGTGACGGGAAGGACCAAGAAGAGGATAGCCCAAA
ATGGCAAAATGGATCGCTGCCGAGAAAGTCAAGGCTGGACTACGGCACGC
AGTGGTATGCCCGAACGTGACGGGAAGGACCAAGAAGAGGATAGCCCAAA
ATTCTGGAGCCGCTCACCCTCATGTACCAGTCGCTGATTTCTACGGGCCA
GGAGGCGCAGGCGAACGGTCCCATTTTGGACGTCATTCGGCGGGTGCGGT
GCTTCGGTGTGTGCCTGGCGCCTCTCGACCTTCGACAGATTCTGGAGCCG
CTCACCCTCATGTACCAGTCGCTGATTTCTACGGGCCAGGAGGCGCAGGC
GAACGGTCCCATTTTGGACGTCATTCGGCGGGTGCGGTGCTTCGGTGTGT
GCCTGGCGCCTCTCGACCTTCGACAGGAATCAACGCGGCATACGGAAGCC
TTGGACGCTATCACTCGCTACCTGGGGTCGGATCCTACGCTCAGTGGGAC
GAGGCCACGAGACAGTCCTGGTTGTTGATGGAGCTTCAGAGCAAGAGGCC
GCTGCTACCGAGAACAGGATCGAGTATCGATCTAGGCTTGGATCTAATAG
TGCAGGAATCAACGCGGCATACGGAAGCCTTGGACGCTATCACTCGCTAC
CTGGGGTCGGATCCTACGCTCAGTGGGACGAGGCCACGAGACAGTCCTGG
TTGTTGATGGAGCTTCAGAGCAAGAGGCCGCTGCTACCGAGAACAGGATC
GAGTATCGATCTAGGCTTGGATCTAATAGTGCAGGACACCCTCCGGACCT
TTGAGGTGGCGGCGACCCTCGGAGAAGAAGCCTTGGGCGCCTACGTCATC
TCCATGGCGACGTCTCCATCCGACGTCCTTGCCGTCAAGCTCATGCAGGA
CACCCTCCGGACCTTTGAGGTGGCGGCGACCCTCGGAGAAGAAGCCTTGG
GCGCCTACGTCATCTCCATGGCGACGTCTCCATCCGACGTCCTTGCCGTC
AAGCTCATGCAGAAGGAATTCAACATGCCCTGGAACATGCGGGTGGTGCC
TCTGTTCGAAACGCTCGATGACCTGGAGAAGTCAGAGGATACCATGAGAA
GGAATTCAACATGCCCTGGAACATGCGGGTGGTGCCTCTGTTCGAAACGC
TCGATGACCTGGAGAAGTCAGAGGATACCATGAGAACCCTCCTGGGGTTG
CCGTGGTACCGTGGGAACATCGACGGCAAGCAGGAGGTAATGATCGGCTA
CTCGGACTCCGCGAAGGACGCCGGGAAAATGGCAGCGGCATGGGCGCAGT
ACAAGGCTCAGAACCCTCCTGGGGTTGCCGTGGTACCGTGGGAACATCGA
CGGCAAGCAGGAGGTAATGATCGGCTACTCGGACTCCGCGAAGGACGCCG
GGAAAATGGCAGCGGCATGGGCGCAGTACAAGGCTCAGGAGAGGCTCGCG
AGAGTTGCAGAAGAGGCGGGCGTGAAGGTGGAGAGGCTCGCGAGAGTTGC
AGAAGAGGCGGGCGTGAAGGTG
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