mRNA_F-serratus_M_contig676.17781.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig676.17781.1
Unique NamemRNA_F-serratus_M_contig676.17781.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig676.17781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig676contigF-serratus_M_contig676:8887..10647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog2880.D7FNX8
Hectar predicted targeting categoryother localisation
EggNOG OGs28NM8@1,2QV6X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size653
Cds size651
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig676.17781.1prot_F-serratus_M_contig676.17781.1Fucus serratus malepolypeptideF-serratus_M_contig676 8887..10647 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932066.300659-CDS-F-serratus_M_contig676:8886..89941622932066.300659-CDS-F-serratus_M_contig676:8886..8994Fucus serratus maleCDSF-serratus_M_contig676 8887..8994 +
1690964129.267876-CDS-F-serratus_M_contig676:8886..89941690964129.267876-CDS-F-serratus_M_contig676:8886..8994Fucus serratus maleCDSF-serratus_M_contig676 8887..8994 +
1622932066.3192875-CDS-F-serratus_M_contig676:9346..95351622932066.3192875-CDS-F-serratus_M_contig676:9346..9535Fucus serratus maleCDSF-serratus_M_contig676 9347..9535 +
1690964129.2813284-CDS-F-serratus_M_contig676:9346..95351690964129.2813284-CDS-F-serratus_M_contig676:9346..9535Fucus serratus maleCDSF-serratus_M_contig676 9347..9535 +
1622932066.3390021-CDS-F-serratus_M_contig676:9917..99881622932066.3390021-CDS-F-serratus_M_contig676:9917..9988Fucus serratus maleCDSF-serratus_M_contig676 9918..9988 +
1690964129.292497-CDS-F-serratus_M_contig676:9917..99881690964129.292497-CDS-F-serratus_M_contig676:9917..9988Fucus serratus maleCDSF-serratus_M_contig676 9918..9988 +
1622932066.3566878-CDS-F-serratus_M_contig676:10364..106471622932066.3566878-CDS-F-serratus_M_contig676:10364..10647Fucus serratus maleCDSF-serratus_M_contig676 10365..10647 +
1690964129.3028698-CDS-F-serratus_M_contig676:10364..106471690964129.3028698-CDS-F-serratus_M_contig676:10364..10647Fucus serratus maleCDSF-serratus_M_contig676 10365..10647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig676.17781.1

>prot_F-serratus_M_contig676.17781.1 ID=prot_F-serratus_M_contig676.17781.1|Name=mRNA_F-serratus_M_contig676.17781.1|organism=Fucus serratus male|type=polypeptide|length=217bp
FVNELCGTDPRLKVLVTSDEGISKRTDQYLSNSREGVHPVKNLEMGELAK
LLLSLFPCDGRRLFATKMGLKIGASYEDVAKGLENLKLLESVEGNPGVLC
QIAPLLRRKQFLNDDTVVETAMKYLNRMQYMPKTKSWDTRRSHQISVEEG
LEDKRCRDIWLQATFRGASDNHGFGETDDACYRFVRWSDLLLALERTLCQ
VQTTSSGVGRSVSSENH
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mRNA from alignment at F-serratus_M_contig676:8887..10647+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig676.17781.1 ID=mRNA_F-serratus_M_contig676.17781.1|Name=mRNA_F-serratus_M_contig676.17781.1|organism=Fucus serratus male|type=mRNA|length=1761bp|location=Sequence derived from alignment at F-serratus_M_contig676:8887..10647+ (Fucus serratus male)
TTCGTCAACGAACTTTGCGGCACCGATCCCAGACTCAAGGTTCTCGTCAC
CAGCGATGAGGGCATCTCGAAGCGTACTGACCAATACCTCAGCAACTCCA
GGGAGGGGGTGAGTGATCCAATCCGAGGAATTAACAGTTGTTCTGCATCA
TGGAGGAAGTACATATTTGGTGATGCATGGTGAACTCTTGATGGAGCGCG
TATGACGTTGGTCTTACGTGGAGACTGTTATAGCGCTCTCTGTTACGGGC
GTTTGGGAGCTCTACCACCGCACGCGCAAGATTGGGGTTTTACTCTTGGC
CCGCGAGATCGCAGCTGGAGCGCTCTGAATCGTGCGAGTGACCACACATT
CCTCCGCACATAAAGGTGTGCGTTGCGGGAATCCTGGCCCGATTCGGGCA
GGGCAGCCATTACCATTCCAGTCACCTGAAGTATTTGCATCCGTCTGTCT
GTGTGTGCAGGTACACCCAGTCAAAAACTTGGAAATGGGGGAATTGGCGA
AGTTGCTACTGAGCCTGTTCCCGTGCGATGGCCGACGTTTATTTGCGACC
AAAATGGGGCTAAAAATAGGCGCGAGTTACGAAGACGTGGCGAAAGGTCT
CGAGAATCTTAAACTGCTAGAATCGGTAGAGGGAAATCCCGGAGTACTGG
TGAGGGACGTGGTTACTGCGTAATGTTGAGGTCTGCGTAGCCGTCTATCG
CGGCATTTTTTTTCTCTGACTGGCCGCTCCTTTAGGGAATCTGAACGTTT
TGGATTACGCAAAAACTCATGACCGCGATAAACGTGAAAAAAAAAACCTG
CACGTTTTGGAGTTTACACTTACCCACGCACATATCTTCCAGTTGGATCA
CCTGTGGGAAAAAGGCAGACCTTTGTCTTGAGAGTAAGCTGTATATAGTA
CTTTCCTCCATCGTTGTGCCGTATATTCGTTCCTTCCCTTGCTCGAATGT
GGTTCGTTCTCACCAGCCTCCATGCCTCTTGCGTCTTTACTGTGTTACAT
CGTATCCTTGCACGTTTTCTCTTCTTAACAGTGTCAAATTGCTCCGCTAC
TGAGGCGAAAACAGTTCTTGAACGATGATACGGTGGTGGAAACGGCTATG
AAGTGCGTTCCTTTTAGGAGCATTCCCAAAACTGTAGCAGATGTTGTTGC
TTGTGTGAAGGATTCGGTGGCGTAGCTGTTCAGCATCCCGTATTTCAAAG
TTGTATTCGGAAGACTAGAAGACTAGAAACGAGCGGCGGGGGAGGAGAGA
TTCGACATGCGCCACAGTAGCCGAGCCGCGATGCCAGCAAGTTTGCGTAC
AAGTATGAGGGAAATGGCATGTTCGCGTTCAGTTGCACTGTGTCCCTTGT
AGCGTAATTCATATCTTGCGCTTGCGTATCATACCTCCCCATTGCCAATC
TTCGAGCACGCGTTCACTTCTCAGCCTCTTCGTTCCGTTGTTGTTCTCTG
GCTTCCGCTCGTTTTCTTTTTCCTCCAGATATCTTAATCGAATGCAGTAC
ATGCCCAAAACCAAATCTTGGGATACAAGACGTTCGCACCAAATATCCGT
TGAAGAAGGGCTAGAAGACAAGAGATGTAGGGACATCTGGTTGCAGGCCA
CCTTTAGGGGAGCGAGCGACAACCATGGCTTTGGCGAAACGGACGACGCG
TGTTACCGCTTTGTGCGTTGGAGCGACCTCTTGTTGGCCCTAGAACGCAC
CTTATGCCAGGTTCAAACGACCTCTAGCGGCGTGGGGCGGTCTGTGAGCA
GTGAAAATCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig676:8887..10647+

>mRNA_F-serratus_M_contig676.17781.1 ID=mRNA_F-serratus_M_contig676.17781.1|Name=mRNA_F-serratus_M_contig676.17781.1|organism=Fucus serratus male|type=CDS|length=1302bp|location=Sequence derived from alignment at F-serratus_M_contig676:8887..10647+ (Fucus serratus male)
TTCGTCAACGAACTTTGCGGCACCGATCCCAGACTCAAGGTTCTCGTCAC
CAGCGATGAGGGCATCTCGAAGCGTACTGACCAATACCTCAGCAACTCCA
GGGAGGGGTTCGTCAACGAACTTTGCGGCACCGATCCCAGACTCAAGGTT
CTCGTCACCAGCGATGAGGGCATCTCGAAGCGTACTGACCAATACCTCAG
CAACTCCAGGGAGGGGGTACACCCAGTCAAAAACTTGGAAATGGGGGAAT
TGGCGAAGTTGCTACTGAGCCTGTTCCCGTGCGATGGCCGACGTTTATTT
GCGACCAAAATGGGGCTAAAAATAGGCGCGAGTTACGAAGACGTGGCGAA
AGGTCTCGAGAATCTTAAACTGCTAGAATCGGTAGAGGGAAATCCCGGAG
TACTGGTACACCCAGTCAAAAACTTGGAAATGGGGGAATTGGCGAAGTTG
CTACTGAGCCTGTTCCCGTGCGATGGCCGACGTTTATTTGCGACCAAAAT
GGGGCTAAAAATAGGCGCGAGTTACGAAGACGTGGCGAAAGGTCTCGAGA
ATCTTAAACTGCTAGAATCGGTAGAGGGAAATCCCGGAGTACTGTGTCAA
ATTGCTCCGCTACTGAGGCGAAAACAGTTCTTGAACGATGATACGGTGGT
GGAAACGGCTATGAATGTCAAATTGCTCCGCTACTGAGGCGAAAACAGTT
CTTGAACGATGATACGGTGGTGGAAACGGCTATGAAATATCTTAATCGAA
TGCAGTACATGCCCAAAACCAAATCTTGGGATACAAGACGTTCGCACCAA
ATATCCGTTGAAGAAGGGCTAGAAGACAAGAGATGTAGGGACATCTGGTT
GCAGGCCACCTTTAGGGGAGCGAGCGACAACCATGGCTTTGGCGAAACGG
ACGACGCGTGTTACCGCTTTGTGCGTTGGAGCGACCTCTTGTTGGCCCTA
GAACGCACCTTATGCCAGGTTCAAACGACCTCTAGCGGCGTGGGGCGGTC
TGTGAGCAGTGAAAATCACATATCTTAATCGAATGCAGTACATGCCCAAA
ACCAAATCTTGGGATACAAGACGTTCGCACCAAATATCCGTTGAAGAAGG
GCTAGAAGACAAGAGATGTAGGGACATCTGGTTGCAGGCCACCTTTAGGG
GAGCGAGCGACAACCATGGCTTTGGCGAAACGGACGACGCGTGTTACCGC
TTTGTGCGTTGGAGCGACCTCTTGTTGGCCCTAGAACGCACCTTATGCCA
GGTTCAAACGACCTCTAGCGGCGTGGGGCGGTCTGTGAGCAGTGAAAATC
AC
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