mRNA_F-serratus_M_contig6756.17779.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6756.17779.1
Unique NamemRNA_F-serratus_M_contig6756.17779.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6756.17779.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 2.640e-67
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 1 
Query:    7 PSKKSAKVPKKAGDKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 342
            PSKKSAK PKKAGDKK+ NKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    5 PSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_F-serratus_M_contig6756.17779.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 191 bits (484), Expect = 1.090e-60
Identity = 98/112 (87.50%), Postives = 107/112 (95.54%), Query Frame = 1 
Query:    7 PSKKSAKVPKKAGDKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 342
            PSKKSAK PKKAGDK K  KRTESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   19 PSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_F-serratus_M_contig6756.17779.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.050e-60
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 1 
Query:    7 PSKKSAKVPKKAGD-KKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 342
            PSKK+AK PKKA D KKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    5 PSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_F-serratus_M_contig6756.17779.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.370e-58
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 1 
Query:    7 PSKKSAKVPKKAGD-KKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 342
            PSKK+AK PKKA D KKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  138 PSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_F-serratus_M_contig6756.17779.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 182 bits (462), Expect = 1.420e-57
Identity = 94/112 (83.93%), Postives = 105/112 (93.75%), Query Frame = 1 
Query:    7 PSKKSAKVPKKAGDKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 342
            PSKK+AK PKKAG K+  NKR E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    5 PSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
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BLAST of mRNA_F-serratus_M_contig6756.17779.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 182 bits (461), Expect = 2.370e-57
Identity = 96/114 (84.21%), Postives = 105/114 (92.11%), Query Frame = 1 
Query:    7 PSKKSAKVPKKAGDKKKANK--RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 342
            PSKKSAK PKK G+K K  K  R ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    5 PSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
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BLAST of mRNA_F-serratus_M_contig6756.17779.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 181 bits (459), Expect = 4.340e-57
Identity = 94/112 (83.93%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    7 PSKKSAKVPKKAGDKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 342
            PSK+SAK PKKA    K+ KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    5 PSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
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BLAST of mRNA_F-serratus_M_contig6756.17779.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.700e-55
Identity = 94/112 (83.93%), Postives = 105/112 (93.75%), Query Frame = 1 
Query:    7 PSKKSAKVPKKAGDKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 342
            PSKK+A  PKKAG K+ + KRTESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   12 PSKKAA-APKKAGGKR-SRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_F-serratus_M_contig6756.17779.1 vs. uniprot
Match: A0A6G0XRP0_9STRA (Histone H2B n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRP0_9STRA)

HSP 1 Score: 176 bits (447), Expect = 3.330e-55
Identity = 91/114 (79.82%), Postives = 105/114 (92.11%), Query Frame = 1 
Query:    7 PSKKSAKVPKKAGDKKKANK--RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 342
            P+KK+AK PKK+G++KK+ K  R ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+  E+ KL+RYNKK TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTK+TSS
Sbjct:    6 PNKKTAKAPKKSGNEKKSRKTRRVESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIGAEASKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKYTSS 119
[Close]
BLAST of mRNA_F-serratus_M_contig6756.17779.1 vs. uniprot
Match: A0A835YLA9_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA9_9STRA)

HSP 1 Score: 177 bits (448), Expect = 4.160e-55
Identity = 94/113 (83.19%), Postives = 103/113 (91.15%), Query Frame = 1 
Query:    4 RPSKKSAKVPKKAGD-KKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 339
            R SKK+AK PKKA + KK+  KR ESYSSYIYKVLKQVHPDTGISKRGMS+MNSFINDVFER+A E+G+LTRYN + TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS
Sbjct:   26 RSSKKAAKAPKKAVEGKKRRPKRVESYSSYIYKVLKQVHPDTGISKRGMSVMNSFINDVFERIASEAGRLTRYNNRQTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 138
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6756.17779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI2.640e-6797.32Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA1.090e-6087.50Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA2.050e-6089.38Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CJT3_9STRA1.370e-5889.38Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU1.420e-5783.93Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A485K2U0_9STRA2.370e-5784.21Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
B7FWR8_PHATC4.340e-5783.93Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA1.700e-5583.93Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A6G0XRP0_9STRA3.330e-5579.82Histone H2B n=1 Tax=Aphanomyces euteiches TaxID=10... [more]
A0A835YLA9_9STRA4.160e-5583.19Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6756contigF-serratus_M_contig6756:27020..27364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.1
Seed ortholog evalue1.1e-51
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932066.125993-CDS-F-serratus_M_contig6756:27019..273641622932066.125993-CDS-F-serratus_M_contig6756:27019..27364Fucus serratus maleCDSF-serratus_M_contig6756 27020..27364 +
1690964129.1929133-CDS-F-serratus_M_contig6756:27019..273641690964129.1929133-CDS-F-serratus_M_contig6756:27019..27364Fucus serratus maleCDSF-serratus_M_contig6756 27020..27364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6756.17779.1prot_F-serratus_M_contig6756.17779.1Fucus serratus malepolypeptideF-serratus_M_contig6756 27020..27364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6756.17779.1

>prot_F-serratus_M_contig6756.17779.1 ID=prot_F-serratus_M_contig6756.17779.1|Name=mRNA_F-serratus_M_contig6756.17779.1|organism=Fucus serratus male|type=polypeptide|length=115bp
PRPSKKSAKVPKKAGDKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMS
IMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHA
VSEGTKAVTKFTSS*
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mRNA from alignment at F-serratus_M_contig6756:27020..27364+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6756.17779.1 ID=mRNA_F-serratus_M_contig6756.17779.1|Name=mRNA_F-serratus_M_contig6756.17779.1|organism=Fucus serratus male|type=mRNA|length=345bp|location=Sequence derived from alignment at F-serratus_M_contig6756:27020..27364+ (Fucus serratus male)
CCAAGACCCTCAAAGAAGTCCGCCAAAGTGCCCAAGAAGGCCGGCGACAA
GAAGAAAGCCAACAAGAGGACCGAGTCCTATTCGTCTTACATTTACAAGG
TACTCAAACAAGTTCACCCAGATACGGGTATCTCGAAGCGCGGCATGTCC
ATCATGAACTCGTTCATCAACGACGTGTTCGAGCGTGTGGCCGGCGAGTC
GGGCAAGCTCACCCGCTATAACAAGAAAGCTACCCTGTCCTCACGTGAGG
TGCAGACGGCCGTGCGCCTGATGCTTCCAGGAGAGCTCGCCAAGCATGCC
GTGTCTGAGGGCACTAAGGCCGTCACCAAATTCACTTCATCCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6756:27020..27364+

>mRNA_F-serratus_M_contig6756.17779.1 ID=mRNA_F-serratus_M_contig6756.17779.1|Name=mRNA_F-serratus_M_contig6756.17779.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig6756:27020..27364+ (Fucus serratus male)
CCAAGACCCTCAAAGAAGTCCGCCAAAGTGCCCAAGAAGGCCGGCGACAA
GAAGAAAGCCAACAAGAGGACCGAGTCCTATTCGTCTTACATTTACAAGG
TACTCAAACAAGTTCACCCAGATACGGGTATCTCGAAGCGCGGCATGTCC
ATCATGAACTCGTTCATCAACGACGTGTTCGAGCGTGTGGCCGGCGAGTC
GGGCAAGCTCACCCGCTATAACAAGAAAGCTACCCTGTCCTCACGTGAGG
TGCAGACGGCCGTGCGCCTGATGCTTCCAGGAGAGCTCGCCAAGCATGCC
GTGTCTGAGGGCACTAAGGCCGTCACCAAATTCACTTCATCCTGACCAAG
ACCCTCAAAGAAGTCCGCCAAAGTGCCCAAGAAGGCCGGCGACAAGAAGA
AAGCCAACAAGAGGACCGAGTCCTATTCGTCTTACATTTACAAGGTACTC
AAACAAGTTCACCCAGATACGGGTATCTCGAAGCGCGGCATGTCCATCAT
GAACTCGTTCATCAACGACGTGTTCGAGCGTGTGGCCGGCGAGTCGGGCA
AGCTCACCCGCTATAACAAGAAAGCTACCCTGTCCTCACGTGAGGTGCAG
ACGGCCGTGCGCCTGATGCTTCCAGGAGAGCTCGCCAAGCATGCCGTGTC
TGAGGGCACTAAGGCCGTCACCAAATTCACTTCATCCTGA
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