mRNA_F-serratus_M_contig6742.17764.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6742.17764.1
Unique NamemRNA_F-serratus_M_contig6742.17764.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6742.17764.1 vs. uniprot
Match: D8LNV8_ECTSI (TFIIS N-terminal domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV8_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.090e-9
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 2 
Query:    2 LPGTYSSLKQSDAGRALKALYKHADIGVKKQAKAVIAHWKNELV 133
            LP TYSSL QSDAG+ALKAL KHAD G++KQAKAVI+HW+  LV
Sbjct:  179 LPVTYSSLMQSDAGKALKALNKHADSGIRKQAKAVISHWRTALV 222
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BLAST of mRNA_F-serratus_M_contig6742.17764.1 vs. uniprot
Match: A0A6H5K714_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K714_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.100e-9
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:  139 DEGEIAKHREKLDALHDDIKAKQAAAKKAKDDAEKAEKLKRRAIRAQNRPPNGTEAPPIISAPP 330
            D+GEIAKHR++LD LHD +KAKQ A KKAK +   AEK +R   RAQ+RPPNG    PI + PP
Sbjct:  275 DKGEIAKHRKQLDDLHDKLKAKQDAEKKAKAELADAEKRRRDLARAQSRPPNGVGGSPITAPPP 338
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6742.17764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNV8_ECTSI1.090e-975.00TFIIS N-terminal domain-containing protein (Fragme... [more]
A0A6H5K714_9PHAE3.100e-959.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6742contigF-serratus_M_contig6742:12355..13756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size672
Cds size669
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6742.17764.1prot_F-serratus_M_contig6742.17764.1Fucus serratus malepolypeptideF-serratus_M_contig6742 12355..13755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932063.5903344-CDS-F-serratus_M_contig6742:12354..124911622932063.5903344-CDS-F-serratus_M_contig6742:12354..12491Fucus serratus maleCDSF-serratus_M_contig6742 12355..12491 +
1690964127.9919083-CDS-F-serratus_M_contig6742:12354..124911690964127.9919083-CDS-F-serratus_M_contig6742:12354..12491Fucus serratus maleCDSF-serratus_M_contig6742 12355..12491 +
1622932063.6014662-CDS-F-serratus_M_contig6742:12714..127781622932063.6014662-CDS-F-serratus_M_contig6742:12714..12778Fucus serratus maleCDSF-serratus_M_contig6742 12715..12778 +
1690964128.0045629-CDS-F-serratus_M_contig6742:12714..127781690964128.0045629-CDS-F-serratus_M_contig6742:12714..12778Fucus serratus maleCDSF-serratus_M_contig6742 12715..12778 +
1622932063.618939-CDS-F-serratus_M_contig6742:13287..137551622932063.618939-CDS-F-serratus_M_contig6742:13287..13755Fucus serratus maleCDSF-serratus_M_contig6742 13288..13755 +
1690964128.0153883-CDS-F-serratus_M_contig6742:13287..137551690964128.0153883-CDS-F-serratus_M_contig6742:13287..13755Fucus serratus maleCDSF-serratus_M_contig6742 13288..13755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6742.17764.1

>prot_F-serratus_M_contig6742.17764.1 ID=prot_F-serratus_M_contig6742.17764.1|Name=mRNA_F-serratus_M_contig6742.17764.1|organism=Fucus serratus male|type=polypeptide|length=223bp
PPGDVLEPEAVRRGEGTEGALQARRHRGEEAGEGGHRTLEKRTGDEDEGE
IAKHREKLDALHDDIKAKQAAAKKAKDDAEKAEKLKRRAIRAQNRPPNGT
EAPPIISAPPAPLLYRRSSSNNSSMDSDPGAPVPSKAVTRAGMFDDDPLA
AIGAPGVASGLRTTAGGSVAGTGSARFLPGRKFPTRGTRGRGAAAIGAGS
GRGGRGSVLRGGGGVAAGRGSAT
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mRNA from alignment at F-serratus_M_contig6742:12355..13756+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6742.17764.1 ID=mRNA_F-serratus_M_contig6742.17764.1|Name=mRNA_F-serratus_M_contig6742.17764.1|organism=Fucus serratus male|type=mRNA|length=1402bp|location=Sequence derived from alignment at F-serratus_M_contig6742:12355..13756+ (Fucus serratus male)
CCTCCCGGGGACGTACTCGAGCCTGAAGCAGTCCGACGCGGGGAGGGCAC
TGAAGGCGCTCTACAAGCACGCCGACATCGGGGTGAAGAAGCAGGCGAAG
GCGGTCATCGCACACTGGAAAAACGAACTGGTGATGAGTCAAGTCGAAGG
GGTACATCGGGGGGACTCTCCATTTCATGATCGTTGTATTATTTGTTGCC
GTTTCGAGGAGGCCTCCATATTGTAGAGACCTTCGAGTTGTTTGTATGTA
ATCCATATTCATTTACCATAATATATATATATACAATATATTGATAGTAT
ATATATTGACCCCTATCCCCCCCACCCCGCTTTCCCCAAAATTCGGCGAT
GACGTCAGAGGGACGAGGGAGAAATCGCCAAGCACAGGGAAAAGCTAGAC
GCGCTGCACGACGATATCAAGGCTGTGAGTCTGAGTACTTACATTTAGGA
CCTATGCACTATGAATATAAATAGTAGGACTTGTTATTATTACTTCTAAT
AGGACTGACACCACCGTCAGAGTCGGGGCTTGTCAAGTTGAACAGTGACA
CTCCTGTGCGATAGCCCTCCAGACAGTTTATTTTTATATTTTGTCCTGTT
TTGTTTTGGCTGTGGGAGTAGGGGAAAGCTGGGGTTGGTATTGCTCTTGA
GTGCGGCGCATTCGCCGCTTTACACAAAAGGGCGCATTCTTCGCCACTTC
TCTCAATTCATATTGTGTTTACAATAGCTTCCTTTTTTCTTTTTTCTTTT
GTCTTTTGTCTTTTTTTCAACAGAAAGCTAAAAAACGTGGGAACAATGCT
GCTTGCTGTATTTACCACTAGTTCGAGAGAAAAACGCGGCGCGGCTTTCT
CCGGCGGGATATACGCCCAGATCTACCCCCCTTCATTCATCATCCTCCCT
TTACGTGCCCTGCGTGTTGTGATACCAAAACAGAAACAAGCGGCGGCGAA
AAAAGCCAAGGACGACGCGGAAAAAGCAGAGAAGCTAAAGAGGAGAGCCA
TACGCGCCCAAAATAGGCCTCCGAACGGAACAGAAGCGCCCCCTATCATA
TCAGCGCCCCCCGCTCCCCTACTCTACAGGCGCTCCTCGTCGAACAACTC
CTCGATGGACTCGGACCCAGGGGCACCCGTGCCATCAAAGGCGGTCACGA
GGGCGGGAATGTTCGACGATGATCCACTCGCCGCGATCGGCGCGCCAGGG
GTGGCAAGCGGACTTCGTACTACCGCCGGCGGTTCGGTGGCAGGGACCGG
GTCCGCAAGATTTTTGCCGGGCAGGAAGTTTCCCACCAGGGGCACGAGAG
GTCGCGGCGCAGCGGCAATCGGCGCCGGAAGCGGGAGAGGTGGCAGGGGC
TCTGTCCTGCGGGGCGGTGGGGGCGTGGCGGCCGGGAGAGGTAGTGCTAC
CA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6742:12355..13756+

>mRNA_F-serratus_M_contig6742.17764.1 ID=mRNA_F-serratus_M_contig6742.17764.1|Name=mRNA_F-serratus_M_contig6742.17764.1|organism=Fucus serratus male|type=CDS|length=1338bp|location=Sequence derived from alignment at F-serratus_M_contig6742:12355..13756+ (Fucus serratus male)
CCTCCCGGGGACGTACTCGAGCCTGAAGCAGTCCGACGCGGGGAGGGCAC
TGAAGGCGCTCTACAAGCACGCCGACATCGGGGTGAAGAAGCAGGCGAAG
GCGGTCATCGCACACTGGAAAAACGAACTGGTGATGACCTCCCGGGGACG
TACTCGAGCCTGAAGCAGTCCGACGCGGGGAGGGCACTGAAGGCGCTCTA
CAAGCACGCCGACATCGGGGTGAAGAAGCAGGCGAAGGCGGTCATCGCAC
ACTGGAAAAACGAACTGGTGATGAGGACGAGGGAGAAATCGCCAAGCACA
GGGAAAAGCTAGACGCGCTGCACGACGATATCAAGGCTGGACGAGGGAGA
AATCGCCAAGCACAGGGAAAAGCTAGACGCGCTGCACGACGATATCAAGG
CTAAACAAGCGGCGGCGAAAAAAGCCAAGGACGACGCGGAAAAAGCAGAG
AAGCTAAAGAGGAGAGCCATACGCGCCCAAAATAGGCCTCCGAACGGAAC
AGAAGCGCCCCCTATCATATCAGCGCCCCCCGCTCCCCTACTCTACAGGC
GCTCCTCGTCGAACAACTCCTCGATGGACTCGGACCCAGGGGCACCCGTG
CCATCAAAGGCGGTCACGAGGGCGGGAATGTTCGACGATGATCCACTCGC
CGCGATCGGCGCGCCAGGGGTGGCAAGCGGACTTCGTACTACCGCCGGCG
GTTCGGTGGCAGGGACCGGGTCCGCAAGATTTTTGCCGGGCAGGAAGTTT
CCCACCAGGGGCACGAGAGGTCGCGGCGCAGCGGCAATCGGCGCCGGAAG
CGGGAGAGGTGGCAGGGGCTCTGTCCTGCGGGGCGGTGGGGGCGTGGCGG
CCGGGAGAGGTAGTGCTACCAAACAAGCGGCGGCGAAAAAAGCCAAGGAC
GACGCGGAAAAAGCAGAGAAGCTAAAGAGGAGAGCCATACGCGCCCAAAA
TAGGCCTCCGAACGGAACAGAAGCGCCCCCTATCATATCAGCGCCCCCCG
CTCCCCTACTCTACAGGCGCTCCTCGTCGAACAACTCCTCGATGGACTCG
GACCCAGGGGCACCCGTGCCATCAAAGGCGGTCACGAGGGCGGGAATGTT
CGACGATGATCCACTCGCCGCGATCGGCGCGCCAGGGGTGGCAAGCGGAC
TTCGTACTACCGCCGGCGGTTCGGTGGCAGGGACCGGGTCCGCAAGATTT
TTGCCGGGCAGGAAGTTTCCCACCAGGGGCACGAGAGGTCGCGGCGCAGC
GGCAATCGGCGCCGGAAGCGGGAGAGGTGGCAGGGGCTCTGTCCTGCGGG
GCGGTGGGGGCGTGGCGGCCGGGAGAGGTAGTGCTACC
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